3300002149: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2

Overview

Basic Information

• IMG/M Taxon OID: 3300002149
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0056893 | Ga0005051
• Sample Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 298185379
• Sequencing Scaffolds: 50
• Novel Protein Genes: 54
• Associated Families: 49

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria	14
All Organisms → cellular organisms → Archaea	5
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp.	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	1
Not Available	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Croceitalea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → Methanomassiliicoccaceae → Methanomassiliicoccus → Methanomassiliicoccus luminyensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus → Desulfobulbus propionicus	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis nigrescens	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F001484	Metagenome / Metatranscriptome	686	Y
F002400	Metagenome / Metatranscriptome	563	Y
F004874	Metagenome / Metatranscriptome	420	Y
F006329	Metagenome / Metatranscriptome	376	Y
F006410	Metagenome	374	Y
F007864	Metagenome / Metatranscriptome	343	Y
F008125	Metagenome	338	Y
F008256	Metagenome	336	Y
F008710	Metagenome / Metatranscriptome	329	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J26657_10002894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4145
C687J26657_10003480	All Organisms → cellular organisms → Bacteria	3807
C687J26657_10008858	All Organisms → cellular organisms → Archaea	2364
C687J26657_10009206	All Organisms → cellular organisms → Bacteria	2317
C687J26657_10014922	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp.	1791
C687J26657_10014992	All Organisms → cellular organisms → Bacteria	1785
C687J26657_10015538	All Organisms → cellular organisms → Archaea	1749
C687J26657_10016292	All Organisms → cellular organisms → Bacteria	1701
C687J26657_10017672	All Organisms → cellular organisms → Bacteria	1625
C687J26657_10023396	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1383

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J26657_10002894	C687J26657_1000289410	F096255	VRPLSAHAFNQRRDGLYARFDRLGRASARDLGANKRVRKLVVDLVVPGQLGEPRLPDEVRFRYQEWWRRSSLGWLRVRYDYDFVDLVNGGRRGYHLHPLDGREPVPHAVCVLPDGSGEGRHYFAFEVDLLAVHEEFEGQYAAGRPIDCRGLRSID*
C687J26657_10003480	C687J26657_100034801	F077890	VVPLVGTAIMALVITVNWGTTTYRKAEPVANCRQIRLGMTRVEVLKIMPEPVGRISYKKNRREKEKLIFPSREDAATPPQLVIDGKTGRVEEVVCDENYRLTQKQS*
C687J26657_10008858	C687J26657_100088581	F071103	QIRGGKVAGVSMDRAEYFLSWVRTETAEGMDVVGAPRIVRQGFRPEGGGEPDFSYDEYVAFIEHFRDIAHKIPDEVLESEKFHTQAS*
C687J26657_10009206	C687J26657_100092063	F008256	VRRMGFLILFFSFFICLHAIAMSESTDNTIEENLAYGFSPDCSRWNHYASDFYDMIYFYDTKSVVKKNNNVKVWIKFGEPTNIEKSTRFYKEATALKEIDCDARLIRSIEWNYISMKDEYKKYTSPTKWENIEPETADDALLEEVCPQPKKVRKR*
C687J26657_10012021	C687J26657_100120216	F083869	MTSFTDNSFPYVLICSTFGTIVSLASVWIVTVQSFAPVLGA*
C687J26657_10014922	C687J26657_100149223	F086262	MQSXLEAXCQMCRQKINIGDEIXRXASGXWIHEYCQEKTPETKNNQDNLQDLNKKLLESKTDRLKSLKCIYCGQGSFMKSKLETAALDDGTIITKKLYPCYTCGHIMEFIESLSS*
C687J26657_10014992	C687J26657_100149923	F076232	MVKPWLVRLELARDDGGSLSEDGIRELTDLLTGNGVLPVVLESQGSGAVLVQMTIDATGDRAARAAAESMLRDRAHDVWLAHGLPPFTITFVEAKPKRDPTR*
C687J26657_10015538	C687J26657_100155381	F011654	MPCALLGDRASGKTTFLGLLYSAQVKYGTGITDDFRFHAPSGSLNVMSAVYEGMKDGRFPSATLKEEITELSFVFGYLRKIVGKLPYYIRQQNWSRPFSTLRFSAYDVSGEDIEEFIDTGIASRPLIQQLLKSVVVVVLVDCSKMTTDIDTTPYRKMLRYDSTVAKLLVSFQTYKR
C687J26657_10016292	C687J26657_100162924	F008256	VRRIGFLILFFSFLICLHAIAMSESTDNTIEENLXYGFSPDRSRWXHYASDFYDTIYFYDTKXVVKKNNXVKVWIKFGEPTNIEKSTRXYKEATALKEIDCDTRLIRSIEWNYLSMKDEYKKYTSPTKWE
C687J26657_10017672	C687J26657_100176722	F016408	MPAMTDAEVIASELEKVVDDIQTVFDYDDEFFGYIQKQQVEKISNREMRVPLEISPGGSFQYFNADGGDLGRGSGPKFDKAVLRSVFVSENIEYTKLAQWATDSDRKSIANAVRKLVARSTMELKRQMDAQLMQPGTGVIGTVTTYTAEVIVCTTDGFGVRLMRDQQKIQIFDATLATNRGSATIISWDVPNKTITIDTPIAGVVATDVIVTFGITAPAAIPGIYGVPYHHSNAATGTWLGFQRATTPQIRATRINGGGSALTLTLPRRAINAIGNRVGLNNNFKPDAWMHPAQQQAYEQIGQAVSIIXKQPKEEGLDMYFEKMQMAGAPVRTSFNWDTTRIDFVSKKVWGRGEILPLGFYKTDGRNFFELRGASGGIAAADIFYQVLGTQFFVNNPAACS
C687J26657_10023396	C687J26657_100233961	F008125	MPRRKWPPTPGDTTLNALTPRTNFVRQTILERRYEADAMYAKDLLALERFLSARTVGMADAIALSNLVSRYPREADVIVRELGVRPFVPLEDERVSALVDERIRLAESRHPLRRLRSEEPSGLIEF*
C687J26657_10024196	C687J26657_100241961	F006329	MILELHVADVVDDHKIKMDAMRLKIRKIRKYAIHTEAWYHYAVGSIVTLVAIMIAFVVALKCFT*
C687J26657_10028863	C687J26657_100288631	F060119	VAVNEAQVAGLELERVITKLRVLFERDDKFYSSIEKRNVEKISNRQMRIPLELRPGGAFQYFNADGGDLGRGGGPTFDKATLTAVFASENIEYTKLAQWSTDDARKSIINSVRRLTATAFDELRRQLDSQMQGSGNGVIGTVTTDTPAGGENVIDLTTDGFGANLMRYGQTVQIFDTTLATNRGKGSISFWD
C687J26657_10040397	C687J26657_100403972	F050966	MRENLMSGSMWQGMKTRXGDGTEALSEEMESNGSATPKSRRHPLTLPPDWWESARFQ
C687J26657_10045124	C687J26657_100451241	F057825	MRNVTIMIKPFLEAVRAFKSGPFKSTDLVKRLGYASGYVRNFLSQATRQGLLVPESRAGKREKTFRANPRVVRDIVLRGGKDKEELLNAMGLRSKYFGEYVALDGFEIIDHDQDLYRLGERVFSNREAPGRIVVTNVGVPKKIITVEV*
C687J26657_10048469	C687J26657_100484692	F073509	MLAQEAARLIDQGSVQFILFGVMVLVTFIVLWYTIAK*
C687J26657_10054780	C687J26657_100547801	F021978	MLSGEMARHQIADRVREAEAERFARATRRSRAADERSATRRFARAAFAAVLWPVKH*
C687J26657_10057088	C687J26657_100570883	F091066	MDKEPRMSDQIKKIMEEELKAQGMPSLRKFAEYLMESMAKNGDGTVSHATIINWRNGKPPATDFLEDMIAVYPASDRRFQF
C687J26657_10057116	C687J26657_100571161	F010291	VIFRRRRLPEHLAAPFEAFQALVPMLERAKAALTESVPGTRLPGRPLAETLWEFEEGLRAVDQGMPAWRISEVEPQWLAARDGVREALSLAQRLRGESPEPAGFEGLIGLIG
C687J26657_10059417	C687J26657_100594171	F008710	MKNMRRIFLILTLLLPVTVLVSSASAETKIEATIFSYDG
C687J26657_10059857	C687J26657_100598572	F002400	MPRAIASNTPDTCPICAGPALVRRITTYPGRLTGPAPLSGKEIHVHRVALHACQSCGHLMPTRAGQAKVDRLVAQGIQLFLGLLP*
C687J26657_10060873	C687J26657_100608731	F041378	MPRRASIPRKSKYEHIPANRTTARFHAKLMTDGKKNL
C687J26657_10061443	C687J26657_100614432	F097039	RDRVGKDFVCLVCDWEMDRQHNAALNILKTALASNEALARAVRFQPGALRHDVVSPLYDLPAREGAREEPSGVESQSGVA*
C687J26657_10064595	C687J26657_100645952	F065192	MQSINVTSVQRKQLQTKIRKVFQSEMKKLSEDLQSVLADDIVTAFINRISLFIKIEAKKRRYTRTKRILNP*
C687J26657_10064708	C687J26657_100647082	F091066	MDKEPRMSDQIKKIMEEELKAQGXPSLRKFAEYLMESMAKNGDGTVSHATIINWRNGKPPATDFLEDMIAVYPASDRRFQF
C687J26657_10065192	C687J26657_100651921	F001484	NASTGTWLGFSRATTPEVRASRVNGNSSALTLPLPRIAINKIGNRVGEDENFKPEAWLHPAQAQAYEDIGQQVTIIQKMAKDEGLNMYFGDNMQLAGAPVKRHYQWDKTRIDFVVRSVWGRGEILPLGFYTTTDGRKIFEIRGASGGVATADIFYLSVGMQTFVGNPAALSYIDTLSVPDGY*
C687J26657_10065629	C687J26657_100656292	F091496	MAREIDWVLFEKAVDITMSAVRGAMGGENSQPAAYVGEVFAEAWKALKAAAEDLPEKGKVAGF*
C687J26657_10070871	C687J26657_100708711	F007864	VEIRKPKPPSKWRAPLVVGGLVAALAAGGTFWLLRPDPCAGTNFVSASFGYCVLVPEGWEAGPARFGADVTLDQFAPPTESATVVVEAVDLESGIELEAWSEFVRQRDEEAGLTPGSASETTLDGVGALRWDVTVEADGESFRMREVVAVRGDVGWRITLNDLADGFATTAAVFEDMLGSWQFS*
C687J26657_10071629	C687J26657_100716292	F004874	MGFNAMQPGKIKRGDLLYLLSAIVVVVGLIVWAVR*
C687J26657_10073312	C687J26657_100733121	F044394	MDRQHNAALNILKTALASHEALARAVRFQPGALRRDVVSPLYDLPAREGAREEPSGVESLAG*
C687J26657_10073467	C687J26657_100734672	F017353	MTTLTLIAALVGVLIPPIVIVQALRSKAKDRWPEGLLVGVYLGALGAISVTAIITYFR*
C687J26657_10075232	C687J26657_100752321	F079717	MARGKSVYISREAHQRLKLLAARRNSPMGEVVSDLVAXELAELANPWTNPEGLWLQQQALAEAWDDPSLDVYNDD*
C687J26657_10077821	C687J26657_100778211	F006329	LKEKLKRIEGEKMELELHVADVVDDHKIKMEKMRLKIRKIRKYAIDSEAWYHYAVGSIVTLVAIMIAFVVAFKYFT*
C687J26657_10087577	C687J26657_100875771	F001484	GQTVQVFDTTLATLRGSGVITNWDVEGNSVSITPQIAGVIATDLIVTNGISSPTALPGLFGVPYHHSNASTGTWLGFSRSTTPEIRSNRVNGGASALTXPLPRLAINKIGNRSGIDNNFNPNAWTHPCQKSAYEEIGQLVSIIQKQSKEEALDLYFDSMQMAGAPLKTSFNWDKKRVDFVVDDTWGRGEILPLGFYTTDGRKIFEIRGASGGVAT
C687J26657_10090916	C687J26657_100909161	F010551	MQMERFAMKRLALAIVALSALSAPALAANCAKDYKDFWEKFDRARYAKMSAEQIADLSRTALRGYDACTAGDERFTAANFFKKLDAMGVNAKASDIFKSGAFDPAGAKK*
C687J26657_10092182	C687J26657_100921821	F012612	MPDGTEFRYLGIGVSDAALREFVLRFMSSEGMSWDASTWDDRQLELAFLQRFGETIKVLRQKTAGHTVLVFQPVMAG
C687J26657_10094905	C687J26657_100949052	F006410	PRIPPEKAKEMQERAKERSLILKELKNQGPSTLDALAKSTGIEKEKLFKHLIAMRQFGKVAIAGERDNQLVYGLPEGEETSKS*
C687J26657_10096131	C687J26657_100961311	F093177	DRLLKPEVINMIVKISENLPLKSVEDFCLGYIVGDIVVGAFEESRVRYGRDVNLEEMDEALNLLYRRAIEIKGAIKLATGK*
C687J26657_10098016	C687J26657_100980162	F084026	SAIGHEAVYDAKPTAVDVDGSGQHVLVIYAVPRDPTQVDSPDFRERLRQDFRRAIKEKLNPLLAHVHDVVLVPELPQAGPGKTRTTKELQRDYLSRIRASAGRSA*
C687J26657_10102335	C687J26657_101023352	F065817	AMKFILDTDYEFYGGFLQGMLGANPRHEPQIGFDRVQSAEDRYLFGPDGKLVYQVGHVFTLQMHIVDKQHTRGLFLGDFFAIEEKGPRCLNKFPPELVRTRS*
C687J26657_10108230	C687J26657_101082302	F103989	GKSAIKESKNHQEYDGEINATDIFMRDLRRSYPEFAKELEEFMKRELKRLD*
C687J26657_10109793	C687J26657_101097931	F028264	MSETLERMQKRARELARSGKFREWRSVAFELQFEPSLKEAFQWLHSASVEDAFQWLHSPAAKEELDRLCDEARNPSSR
C687J26657_10111468	C687J26657_101114681	F000611	KIGKTTMQTNMNFPTYVFATVNSGRATKVVEELKRNSQIDFIAPVTGRYDLVLRLKPSAPEQVRQAVAEIREITDIRTTSTHXAFDGIQPNRKLESQMALGVSLLNVEHQPIENSIKQLSNIPGLVEAYAVPGQFDIVALWQARTAEDIMKTSFEKLTTVGGLFKSETLLAHAPYFKA*
C687J26657_10116149	C687J26657_101161491	F038454	VPHKHITERERRPTVLSTDENEQAKRESYKEGYNDGYKKGYEKGYGEANEKTKQKTQKTTVQFLRIICECGTINFHPIFENKLIINEDEERRCHGCGKIMPRDNILTCYSRLQTK*
C687J26657_10120304	C687J26657_101203041	F011197	VEGREFGDGLVAVAPYDTTGFRSPDWRAFQYDESNPDPRPVRGLPGEWAGGAYDFVEGGAGLTIPGLPEVLVGCLDGS*
C687J26657_10120916	C687J26657_101209161	F010609	QLSHRPSSEIIQYTSRRDGFSRLGPKMAPQENLTYTMSLEVYLQSAVVRGVLVTNQDRLSNYLTLCGGDEVFSLRDATLENLERKIIVAGSDQYLIYMQEVFLIADLSSQLRNDRPGLESLYVKKDTSRALLSVGPYWLQGDLHVVPGGALQELLMAKTRFIPVTDALLLNRPDLGPRS
C687J26657_10128446	C687J26657_101284461	F086877	LNLQNHMIGLAVAAARSAPYELHTHTRSLQLDYGLDGGQIVELAATVAHVTSINVFETAIAAFNDNPPMRPQEPSSPVLVEVRQKLGSVPRYFLYMATDPKYAKIVLDREVATVHEGEVSRLNKELVAYATSVVNDGKLSMLYRAEVLRGLGMTNEQLFEVTTVVSIFVKNAS
C687J26657_10129743	C687J26657_101297431	F059835	VIRCPTCGNDVVYSPVPSLYFCLEQMLGENITINVKCKPWILEDAPAEDLLKLTERIEKLAVELRP*
C687J26657_10130585	C687J26657_101305851	F079375	MAEAQKEYLVGTVRPTNRPEAGQELDLEALIPAKIKFVS
C687J26657_10131036	C687J26657_101310361	F009387	KSVVVVVLVDCSKMTTDIDTPVYKKMLRYXSTVAKLLVSFXTXKKQEYERLKDSGVHPEPPIIYPAFVLAKFDTLRDDVLARLGLHRGFPEGKRERREYAEALLRVFVPQTLSQIRGGKVGGVSMDKSEYFLSWVRTETHEGMDPVGQSRIVRTGFRPEGGGEPDFAYDEY
C687J26657_10131611	C687J26657_101316111	F077438	HRVERSFTQSRLETLFLWNLQVEISSALRPKAEKEISSYKN*
C687J26657_10136708	C687J26657_101367081	F046963	MVLTVELKDTLQQLIDNLMVNPQQMRNMAYDLKPLTKDDVEVAFGIFVGYVTGGFAELFFESQKRSMTASELIEVRKILFERA
C687J26657_10137093	C687J26657_101370931	F014258	RPMGVPETPADSPLKLEDVMSSPAYRTLMTPELAPGDPAFPFDLPLLDGSDRVRLADFAGERPVALVFGSYT*
C687J26657_10137627	C687J26657_101376272	F077438	LSFRESRFETLFLWNLQVEISSALGPKAEKEISSYKN*