3300026231: Upper troposphere microbial communities from California, USA - DAQCA-005 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026231
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085196 | Ga0209546
• Sample Name: Upper troposphere microbial communities from California, USA - DAQCA-005 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41306342
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium B17	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032247	Metagenome / Metatranscriptome	180	Y
F032274	Metagenome / Metatranscriptome	180	Y
F045749	Metagenome / Metatranscriptome	152	Y
F049646	Metagenome / Metatranscriptome	146	Y
F051069	Metagenome / Metatranscriptome	144	N
F055725	Metagenome / Metatranscriptome	138	Y
F077438	Metagenome / Metatranscriptome	117	Y
F103354	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209546_1000134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	2180
Ga0209546_1000512	All Organisms → Viruses → Predicted Viral	1455
Ga0209546_1001246	All Organisms → Viruses → Predicted Viral	1114
Ga0209546_1001924	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	958
Ga0209546_1003080	All Organisms → cellular organisms → Bacteria	799
Ga0209546_1003276	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	779
Ga0209546_1004251	Not Available	706
Ga0209546_1006141	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium B17	608
Ga0209546_1007647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	557
Ga0209546_1008115	All Organisms → cellular organisms → Bacteria	544

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209546_1000134	Ga0209546_10001343	F032247	MTIDDAIYNLEAYGRHMGNRFIAINHDRSYELLLKNAVIILEYAGMIERDTVKAWAHCNVRIINRDAERVDYTTGL
Ga0209546_1000512	Ga0209546_10005121	F032274	MQGFFDFTEQIEIVKHKRHKTLWTPKHDWRVAPKIIVTDEYIALDKKLEPIENELFDLIKQMPLAVEEKIKGKICVVNSGHTVDAELINRVRVLRKEASAIGKQLDELFFRTNKKWALFYDYTDKT
Ga0209546_1001246	Ga0209546_10012462	F049646	MTSKAQKPHYCKTDVISSCDCLVGFLSGEKVNKSTIDYEVERIVNIQPAFKKYGLLNGEPQTKRQIVDGRKGYLSRFVYCPYCGEKLNWKQVLSNCL
Ga0209546_1001924	Ga0209546_10019241	F045749	IKGFLLKYNISDEFKASGRAPDTSSRQAMIQATISPEQCSVEDLINKHECSVVNGRILDVTWLNELCVIDGDMLPPTRTLGHILSDMGYSQIEGRRVKIQKTRENHYIWFKNVAGAASSDVIEQVRDFFKKGLDEVPF
Ga0209546_1003080	Ga0209546_10030801	F077438	STHRVERSFTESRLETLFLWNLQVEISAALRSIVEKEISS
Ga0209546_1003276	Ga0209546_10032761	F045749	TYLLTRAISEDFKASGRAPDTKSRQAMIQATISPEKCSVEDLINKHDCAVVNGRILDVTWLAKLCETEGEILPPTRTLGHILSDMGYQQIENRRVFVKKTDKRHYVWFKPSQKTDSDIAKNEVVDFFKKGLDEIPF
Ga0209546_1004251	Ga0209546_10042511	F055725	MAFFNGCGINLKTITELAAQGLSLNSMSKMTGHSKNGIKAALERNNIPYTMGIRECFITVDGVLTSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQQSKRTIDKPILTFKNTTVIYKKERYTLDAISDKLKLNKQRFEVFMRHNRYGQNAFERYCWTRGL
Ga0209546_1006141	Ga0209546_10061411	F103354	KESLSFASKPAGMAPNRQPIVENDDFVKRMQKIAGII
Ga0209546_1007647	Ga0209546_10076471	F051069	VLAMAYRVSISSTELVTRAEVVAYAKIENTDENSIIDALITSSREELENLLKIPLITQVWAQTYDSFIEPVYAPMIPITSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPSLQFDGFKITFTYTVSAIDAALKTAIMELTSYRFYNRGNLEAAKIPASVLSMVGHLRVFSV
Ga0209546_1008115	Ga0209546_10081151	F032247	MTVDDAIHDLEVYGHWMGSRYIAINFDKAHKEVLEKAVAVLDAAGMLERDPHPKWEGCNVRIINKPVPRVDYTTGLXYETV