3300005379: Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 16-4 Below Plume

Overview

Basic Information

• IMG/M Taxon OID: 3300005379
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047147 | Gp0052343 | Ga0074271
• Sample Name: Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 16-4 Below Plume
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52440998
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Subsurface Plume → Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine black smoker biome → black smoker → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.716667
  • Long. (^o): -88.466667
  • Alt. (m): N/A
  • Depth (m): 1250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002556	Metagenome / Metatranscriptome	548	Y
F076161	Metagenome / Metatranscriptome	118	N
F077438	Metagenome / Metatranscriptome	117	Y
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074271_108817	Not Available	974
Ga0074271_125185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	919
Ga0074271_134073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	938
Ga0074271_148257	Not Available	509
Ga0074271_170949	Not Available	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074271_108817	Ga0074271_1088173	F077438	THRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN*
Ga0074271_125185	Ga0074271_1251851	F076161	EAHRFMKSINFSSRCPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASIPNLLTAWTVPQTAADPKEHSNLLSSPTNPDAPTGKPI*
Ga0074271_134073	Ga0074271_1340733	F076161	RVRRQVHWTRGPSNVSRRIRLTPRNRRAEAHRFMKSINFSSRCPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAADPKERSNLLSSPTNPDAPTGKPV*
Ga0074271_148257	Ga0074271_1482571	F002556	LDLRQGPPRAWIGLEQFVNWATDHLITKVATIDAKSEVDFYHVEQYGEHQTLVFLEQAVTDPNSRAHASLYEFLLAIFTEVDSRSTGVLTFGEFDTLLSRAAEVPRTFGLAPPDASKEVRKQFFDSMNDAQMGGVTFRTLLAWTVEHAKGKIEAQKVGKGYKK*
Ga0074271_170949	Ga0074271_1709491	F098669	METATRSRKQKWRLKEAEGLGRKRRVEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKP