3300007643: Biofilm microbial communities from a marine aquaculture plant in North Sea, Germany

Overview

Basic Information

• IMG/M Taxon OID: 3300007643
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118073 | Gp0127839 | Ga0104854
• Sample Name: Biofilm microbial communities from a marine aquaculture plant in North Sea, Germany
• Sequencing Status: Finished
• Sequencing Center: Max Planck Institute for Evolutionary Biology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1479598893
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Anderseniella → unclassified Anderseniella → Anderseniella sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Bizionia → Bizionia argentinensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Biofilm Microbial Communities From A Marine Aquaculture Plant In North Sea, Germany
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Biofilm Marine Aquaculture Plant → Biofilm Microbial Communities From A Marine Aquaculture Plant In North Sea, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Northern Germany
• Coordinates
  • Lat. (^o): 54.13
  • Long. (^o): 8.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001823	Metagenome / Metatranscriptome	630	Y
F006745	Metagenome	365	Y
F028211	Metagenome	192	Y
F028441	Metagenome / Metatranscriptome	191	Y
F041945	Metagenome / Metatranscriptome	159	Y
F064415	Metagenome / Metatranscriptome	128	Y
F073087	Metagenome	120	Y
F077438	Metagenome / Metatranscriptome	117	Y
F079616	Metagenome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104854_10162756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	5767
Ga0104854_10220181	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	95276
Ga0104854_10492196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15894
Ga0104854_10517343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5088
Ga0104854_10564938	All Organisms → cellular organisms → Bacteria	562
Ga0104854_10642477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1924
Ga0104854_10642770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10624
Ga0104854_10726346	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	565
Ga0104854_10965931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2032
Ga0104854_10998227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Anderseniella → unclassified Anderseniella → Anderseniella sp.	1021
Ga0104854_11006329	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Bizionia → Bizionia argentinensis	37759
Ga0104854_11156522	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	635
Ga0104854_11200687	All Organisms → cellular organisms → Bacteria	665
Ga0104854_11279835	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	17383

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104854_10162756	Ga0104854_101627565	F006745	MRTSERHRRASSAVVVYVIVLMSLQVFLVTVAAEAVLDDDEALAWATAGLSVALFLAAAAFLRYLRP*
Ga0104854_10220181	Ga0104854_1022018122	F028441	MTIKQLIKIEDKAKEVWVISPGLHYDTEHKDFSELVSVNLGQKTKYRYIVPATPQIEKHIKVYQKLYGASNADIQKNFLFLPKTEFHPFIMECAIYDASSTCIACTAPALEDGNDVIRLGEKTAKAMAKHFKLLWRKYKRTNP*
Ga0104854_10492196	Ga0104854_1049219623	F001823	AFDRDLICGEHYGQRPVQAPHQQAEHMAAPTSSVLTIKKTLANTEPSTHGT*
Ga0104854_10517343	Ga0104854_105173434	F073087	MSLSQGVKVMTTQHHTSFSKTIVGSAQRLFRSSKSHGLLASSHIDARTMRDIGVNPVGFN
Ga0104854_10564938	Ga0104854_105649381	F077438	SLCCVYSTHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN*
Ga0104854_10642477	Ga0104854_106424771	F073087	MTRQHHTSFTRAILKSTQRLLRANSNGNLLASNHIDARTMRDIGISRVGMS*
Ga0104854_10642770	Ga0104854_106427701	F073087	MTRQHHTSFTSAILKSTQRLLRASSNGNLLASNHIDARTMRDIGISRVGMS*
Ga0104854_10726346	Ga0104854_107263461	F028441	MTIKQLIKIEDKAKEVWVISPGLHYDTEHKDFSELVSVNLGQKTKYRYIVPATPQIEKHIKVYQKLYKATDEDIQKNFLFLPTTEFHPFIMECAIYDASSSCIACTAPALDDSNDVIRLSANTAKSMAKHFKLLWKKYKRTNP*
Ga0104854_10965931	Ga0104854_109659311	F064415	MSSLDHVVGPEEHELLTVQEATDYLRIGRSLGYQLAHEYLNSGGTSGLPVILFGEKCYLVSRCALVELATTVRV
Ga0104854_10998227	Ga0104854_109982272	F073087	MTTQHHTSFTKAIVGSAQRLFRSGKHHGMLASSHIDARTMRDIGVNPVGLR*
Ga0104854_11006329	Ga0104854_1100632938	F079616	MFKIGEIVVCVNARRKWYRLGGLEKNQMYTVTGFNPYDGGLILKEVKSPRSGYNAFAANRFRKVDYNFATHILEEMQSQQQPIPQPEVEPQLQPQKFELSLLN*
Ga0104854_11156522	Ga0104854_111565221	F028211	SSIWMGISPGVQSTRVIAMTGSEIILKAHLKQDSTHPRGLAALLEAISLWQGVPVRAALCADAPGLSCDSNLCREAFSDDGGPLYSITWVHAGAHRRRRRGIDGLGSFSDLERVLIAEVAR*
Ga0104854_11200687	Ga0104854_112006871	F041945	SPERMYREIKRLQEENRYLMRQREILKKAMSILGESPQTNMR*
Ga0104854_11279835	Ga0104854_112798354	F028441	MTIKQLIKLEDKAKEVWVISPTLHYDTENKDFTELVSVNLGEKTKYRYIVPASRTVLKNLKVFKKTYKVTDAEIQQIFCLLPESEFNPFIQEIAIYNASNECVACAGSSTEDTNDVIKFDHAHAKAMAKSFKAIWKKYKMVNP*