3300000519: Amended soil microbial communities from Kansas Great Prairies, USA - acetate and BrdU F2.1B

Overview

Basic Information

• IMG/M Taxon OID: 3300000519
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0051396 | Gp0054041 | Ga0026756
• Sample Name: Amended soil microbial communities from Kansas Great Prairies, USA - acetate and BrdU F2.1B
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71016757
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata	1
All Organisms → cellular organisms → Bacteria	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → prairie → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040189	Metagenome / Metatranscriptome	162	Y
F077438	Metagenome / Metatranscriptome	117	Y
F077781	Metagenome / Metatranscriptome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
RepKanNP_Acetate_BrdU_F21BDRAFT_1003286	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata	1580
RepKanNP_Acetate_BrdU_F21BDRAFT_1004337	All Organisms → cellular organisms → Bacteria	1250
RepKanNP_Acetate_BrdU_F21BDRAFT_1004355	Not Available	1246
RepKanNP_Acetate_BrdU_F21BDRAFT_1005741	All Organisms → cellular organisms → Bacteria	1010

Sequences

Scaffold ID	Protein ID	Family	Sequence
RepKanNP_Acetate_BrdU_F21BDRAFT_1003286	RepKanNP_Acetate_BrdU_F21BDRAFT_10032861	F077781	AAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*NHRSSGHTCFRERMLRVSCRLSLDLSSSWVRG*
RepKanNP_Acetate_BrdU_F21BDRAFT_1004337	RepKanNP_Acetate_BrdU_F21BDRAFT_10043371	F077438	HRVERSFTQSRFETLFFWNLQVEISAALRSMVEKEISSYKN*
RepKanNP_Acetate_BrdU_F21BDRAFT_1004355	RepKanNP_Acetate_BrdU_F21BDRAFT_10043552	F040189	PPNYTTQNVLYGVGILFTAIPGTTVPSDQNLGVASAWTGLGWAYVGATEAGLTVTFNPSTQDLNIEEQPTPVAVIVNTATLQVTCSLSEETLTNVNMAWGNGGSIAVTPAGAGQPGKSVLTLSTNFASMACAVIGRNQQGYARVLSIPQVMAAGQVQTAYRRAAQQRLYPLTLNATCPFNQISWTDLTAVATS*
RepKanNP_Acetate_BrdU_F21BDRAFT_1005741	RepKanNP_Acetate_BrdU_F21BDRAFT_10057411	F077438	VYSTHTVERWFTQSRFETLFLWNLQVEISAALRSMVE