3300010933: Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1383E

Overview

Basic Information

• IMG/M Taxon OID: 3300010933
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121566 | Gp0156108 | Ga0137936
• Sample Name: Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1383E
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120321168
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	1
All Organisms → cellular organisms → Bacteria	2
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.8
  • Long. (^o): -46.05
  • Alt. (m): N/A
  • Depth (m): 4425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013401	Metagenome / Metatranscriptome	271	Y
F018877	Metagenome / Metatranscriptome	232	Y
F038915	Metagenome	165	Y
F043627	Metagenome / Metatranscriptome	156	Y
F077438	Metagenome / Metatranscriptome	117	Y
F079374	Metagenome	116	Y
F081350	Metagenome / Metatranscriptome	114	Y
F081360	Metagenome	114	Y
F093968	Metagenome	106	Y
F094843	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137936_1000867	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	3283
Ga0137936_1001750	All Organisms → cellular organisms → Bacteria	2148
Ga0137936_1011641	Not Available	926
Ga0137936_1017059	Not Available	796
Ga0137936_1019155	Not Available	759
Ga0137936_1022453	Not Available	711
Ga0137936_1023158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	702
Ga0137936_1025584	All Organisms → cellular organisms → Bacteria	673
Ga0137936_1027015	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	658
Ga0137936_1035163	Not Available	588
Ga0137936_1044289	Not Available	532

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137936_1000867	Ga0137936_10008675	F038915	MPSIRLSNAGIAANILNGLQFQDIPEPGALVSIFASTAAAGGLVSYSVGTERFLVDAAVNIESAVDRVDTQMDSLLDREPVPAGKQFLAIAAQICNVLVVIEDLPAG*
Ga0137936_1001750	Ga0137936_10017501	F077438	TKSRFETLFLWNLQVEISSALRPKAEKEISSYKN*
Ga0137936_1011641	Ga0137936_10116411	F081350	MRPARASSVLLAMGAFVLVASAADAEEAFMYADRPIHPGCIHALAMHQGDAVPVTTAVSLAGCATSERSKSEVRYEGDLAVIKDEDLLGGGSFGYRVINQLDNGIFGLAVRRVLPDGEERVSLAAVQLVGRHMIRHGSTVRLMLVELLGEMWIPDMQLLSFQSIGNKVHFVSGVGPDRVERTIDFTRIGKQRK*
Ga0137936_1017059	Ga0137936_10170592	F094843	MIACVHVAKILPGKKEEFMQQLKEGFETGREALRSFGFTRIVSFTTPEVVGDREALLVTVYEAEDPSVVERFYKLEPVLQQEARAHGVLVAPHDHEAVPNNVAFVDMDLTS*
Ga0137936_1019155	Ga0137936_10191552	F043627	MTKWLIANTVNVEGGKIEYFIPEKPLLHACCNIDHFGDVNIDIRPEVKPDKVCDITKKLPFPDNSFAAAFADFPWVTAWRWKAARAIKEMLRVAPIVYTICPWLYGARTCYPETINISWRPGINHPILFVKYVRRETVQTKGIS*
Ga0137936_1022453	Ga0137936_10224533	F081360	FLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHDASRPEEQRRLTD*
Ga0137936_1023158	Ga0137936_10231583	F093968	MTHRDGLPRFSALSVRCGDAGHREACATPSESLGKPPFRSRMRPVGG
Ga0137936_1025584	Ga0137936_10255842	F093968	MTRRAGLPRFSARSVRRGDAGHRKACATPSESLGKP
Ga0137936_1027015	Ga0137936_10270152	F079374	MRKKKPLEEHGLPSLSLVFGYIAIKEMQRLEDRVKVLARIGYGNAEIARICDTTPATVRTLKSAIKRGSKK*
Ga0137936_1035163	Ga0137936_10351631	F013401	MAKDGKKKKVKSNSSTKYESSSDDNASDEEDNLRSLFANLNMQQKEKLNELISAIHEKDDLLDSQEDCLIKENKKHVKVKNAYALEIEKGEKLSSELSTCHETIDNLRNENARLIAKIDSHVCVASIPNLRNDNDDLLAKIKELNDSLDSLRVENENLIAKAEDFDVCNTTIYDLRTKNDMSHAKVVELKSC
Ga0137936_1044289	Ga0137936_10442892	F018877	MAGGKFFTDVWDNGGREMAREIIQRSEKGIHDAREVAEAAEKSAEPEGQLGTK*