3300026796: Rhizosphere microbial communities from Harvard Forest, USA - 6Rhizosphere_unsorted metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026796
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053064 | Gp0104120 | Ga0208943
• Sample Name: Rhizosphere microbial communities from Harvard Forest, USA - 6Rhizosphere_unsorted metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19739258
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Rhizosphere And Bulk Soil Microbial Communities From Harvard Forest, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Rhizosphere → Rhizosphere And Bulk Soil Microbial Communities From Harvard Forest, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Harvard Forest, Massachusetts, USA
• Coordinates
  • Lat. (^o): 42.5502
  • Long. (^o): -72.1737
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005160	Metagenome / Metatranscriptome	410	Y
F020351	Metagenome / Metatranscriptome	224	Y
F021008	Metagenome / Metatranscriptome	221	Y
F077438	Metagenome / Metatranscriptome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208943_100287	All Organisms → cellular organisms → Bacteria	640
Ga0208943_100759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	542
Ga0208943_100886	All Organisms → cellular organisms → Bacteria	529
Ga0208943_100901	All Organisms → cellular organisms → Bacteria	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208943_100287	Ga0208943_1002872	F005160	VPPASAILRLLVFAVPSARAAAGVQPLLGAATGVVQLRWALGLTAPAVVVAGLVFGAGRLFDRGDALQPPWYSAWVLFPGAFLLAGAAAMCIFGALTELSLIPPAMWTFLIAGSVLWAGAIVVVRSASR
Ga0208943_100759	Ga0208943_1007592	F020351	MTEMVTSGSMSGERKRSDGLLGESDYERRRLLQAPPVLPATALLLDSTQLLVR
Ga0208943_100886	Ga0208943_1008862	F077438	VYSTHRVEGSFTQSRLETLFLWNLQVEISSALRPKAEKEISSYKK
Ga0208943_100901	Ga0208943_1009011	F021008	MTNAPSMKLLGLDHIGIVVRDIDETVSRARETVDGRPVGERFVAADIDLQALLCGESTLELIEV