NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028032

3300028032: Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #1



Overview

Basic Information
IMG/M Taxon OID3300028032 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0127567 | Gp0306215 | Ga0265296
Sample NameGroundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size746937909
Sequencing Scaffolds45
Novel Protein Genes51
Associated Families42

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales1
All Organisms → cellular organisms → Archaea7
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium CG22_combo_CG10-13_8_21_14_all_63_911
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLeachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomelandfillgroundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004207Metagenome448Y
F008168Metagenome / Metatranscriptome338Y
F010394Metagenome / Metatranscriptome304Y
F019675Metagenome228Y
F021446Metagenome / Metatranscriptome219Y
F026006Metagenome / Metatranscriptome199Y
F026911Metagenome / Metatranscriptome196Y
F033648Metagenome177Y
F035129Metagenome / Metatranscriptome173Y
F036294Metagenome / Metatranscriptome170Y
F036991Metagenome / Metatranscriptome169Y
F038735Metagenome / Metatranscriptome165Y
F040697Metagenome / Metatranscriptome161Y
F046735Metagenome / Metatranscriptome151Y
F048390Metagenome / Metatranscriptome148Y
F048873Metagenome147Y
F050777Metagenome / Metatranscriptome145N
F051902Metagenome / Metatranscriptome143Y
F053932Metagenome / Metatranscriptome140Y
F054136Metagenome140Y
F055825Metagenome / Metatranscriptome138Y
F057480Metagenome136Y
F058081Metagenome135Y
F058941Metagenome134Y
F062490Metagenome / Metatranscriptome130Y
F064732Metagenome / Metatranscriptome128Y
F065251Metagenome / Metatranscriptome128Y
F067652Metagenome / Metatranscriptome125Y
F069483Metagenome / Metatranscriptome124Y
F072481Metagenome / Metatranscriptome121Y
F080090Metagenome / Metatranscriptome115Y
F083634Metagenome112Y
F088316Metagenome / Metatranscriptome109N
F089576Metagenome109Y
F089951Metagenome108Y
F093357Metagenome106Y
F094578Metagenome / Metatranscriptome106Y
F095421Metagenome / Metatranscriptome105Y
F097616Metagenome / Metatranscriptome104Y
F100040Metagenome103N
F102533Metagenome / Metatranscriptome101Y
F105254Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0265296_1000028All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria344084Open in IMG/M
Ga0265296_1000037All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula315680Open in IMG/M
Ga0265296_1000061All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula229803Open in IMG/M
Ga0265296_1000211All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales105340Open in IMG/M
Ga0265296_1000798All Organisms → cellular organisms → Archaea42056Open in IMG/M
Ga0265296_1000830Not Available40999Open in IMG/M
Ga0265296_1001168Not Available31895Open in IMG/M
Ga0265296_1001646Not Available24893Open in IMG/M
Ga0265296_1001746All Organisms → cellular organisms → Bacteria → Proteobacteria23752Open in IMG/M
Ga0265296_1001784All Organisms → cellular organisms → Bacteria23387Open in IMG/M
Ga0265296_1001833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria22849Open in IMG/M
Ga0265296_1003942All Organisms → cellular organisms → Bacteria13283Open in IMG/M
Ga0265296_1004128All Organisms → cellular organisms → Bacteria12829Open in IMG/M
Ga0265296_1004598All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria11909Open in IMG/M
Ga0265296_1005261All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria10740Open in IMG/M
Ga0265296_1007392All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria8242Open in IMG/M
Ga0265296_1008165All Organisms → cellular organisms → Bacteria7628Open in IMG/M
Ga0265296_1009631All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica6729Open in IMG/M
Ga0265296_1013022All Organisms → cellular organisms → Bacteria5311Open in IMG/M
Ga0265296_1013781All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei5083Open in IMG/M
Ga0265296_1014439All Organisms → cellular organisms → Bacteria4894Open in IMG/M
Ga0265296_1021607All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3550Open in IMG/M
Ga0265296_1024567All Organisms → cellular organisms → Bacteria3206Open in IMG/M
Ga0265296_1038520All Organisms → cellular organisms → Archaea2267Open in IMG/M
Ga0265296_1059277All Organisms → cellular organisms → Bacteria1641Open in IMG/M
Ga0265296_1061083All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae1604Open in IMG/M
Ga0265296_1068961All Organisms → cellular organisms → Archaea1468Open in IMG/M
Ga0265296_1073847Not Available1396Open in IMG/M
Ga0265296_1075732All Organisms → cellular organisms → Archaea1371Open in IMG/M
Ga0265296_1082311All Organisms → cellular organisms → Archaea1290Open in IMG/M
Ga0265296_1085080All Organisms → cellular organisms → Archaea1260Open in IMG/M
Ga0265296_1094390All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.1170Open in IMG/M
Ga0265296_1102621All Organisms → cellular organisms → Archaea1102Open in IMG/M
Ga0265296_1128011All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans945Open in IMG/M
Ga0265296_1150709All Organisms → cellular organisms → Bacteria845Open in IMG/M
Ga0265296_1154078Not Available832Open in IMG/M
Ga0265296_1183779All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium737Open in IMG/M
Ga0265296_1187818All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium CG22_combo_CG10-13_8_21_14_all_63_91726Open in IMG/M
Ga0265296_1188183Not Available725Open in IMG/M
Ga0265296_1200142All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes695Open in IMG/M
Ga0265296_1218736All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes654Open in IMG/M
Ga0265296_1264363Not Available575Open in IMG/M
Ga0265296_1277570Not Available556Open in IMG/M
Ga0265296_1288016All Organisms → cellular organisms → Bacteria542Open in IMG/M
Ga0265296_1324583Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0265296_1000028Ga0265296_1000028214F053932MNRWLPYVLFPRPGWYILHAIIITLVFCLGYVVKF
Ga0265296_1000037Ga0265296_1000037271F026911MSSYHFCQDCEHIRIKMVPGVQGSAVKEMSCPARFNPREGKWIPAHGVNPHECPRNENFMRLQKQADERRLR
Ga0265296_1000061Ga0265296_1000061170F083634MLKMADQIITLDRLKINGHVRRLARELRITVGHDADRLTLTNDEFGLLVSAPTLEEGIAGISDELSTLWEVYVAGNPANLTRDALRLRSHLESLVVAGASS
Ga0265296_1000211Ga0265296_1000211108F072481MIHGSKQEDDAKARKDGTVPPFRPDPNSEKNVCCKHCGETYKEKDIKWDHVSGNWVCKHHPKCDGAGWLPF
Ga0265296_1000263Ga0265296_100026352F038735MKWFINTMIGYWVLLLAISLGIAAAIYEIWLRDALF
Ga0265296_1000798Ga0265296_100079819F026911MSSYHFCRDCEYIKIKMVPGVNGSTVKELSCPARFNPREGKWIPVLGVNPHECPRNENFMRIQKQSDERRLR
Ga0265296_1000830Ga0265296_100083026F048390MVRFVRTLQHRVTPQGRDFYALSIPPQVAEALNLKAGGVVSLCVNPVKKGKFEVTIKAVSYELS
Ga0265296_1001168Ga0265296_100116817F048390MVRFLRTLQHRVTAHGRDFYALSIPPQVAEALGLQAGGQVTIEVRPVKKGKFEIVLKPLSLEDNINH
Ga0265296_1001646Ga0265296_100164630F026911MSSYHFCRNCEYIKIKMVPGLHGAAVKEMSCPARFNPREGKWILANGENPHECPRNENFMRLQKQSDECRFH
Ga0265296_1001746Ga0265296_10017461F036991LVTNDMSGIVAHNLSGLGWSPLEVTNEMDRGARGDPEDAI
Ga0265296_1001784Ga0265296_10017849F058081MARRIVKRAHRRNTAPMWKKAAVVLSAPLAVGLIASYFHASTWSLVPFAAMVVGVAAAAVWLVARLLGVHLSLRSWD
Ga0265296_1001833Ga0265296_10018339F010394MSETSNLRNPEPGDVDAWRAAFDELELRMDALRQAFLDGVRSFNMGDEIVERIHARFDDLGEQLHAMHCTYPFGGWPGREDCRFEPPLTYDSAAQRAPGA
Ga0265296_1003942Ga0265296_10039428F019675MRKTQQILAILTGAIGALLIARSVAGGQLWPLSIQLIAGVLLVVMAVLRWRGL
Ga0265296_1004128Ga0265296_10041286F058941MSRRTLTAIGLGLLIAALTLFVSRRFGITFLFLPLFFTWGRGRRDGR
Ga0265296_1004598Ga0265296_100459812F038735MRWFIDSMIGYWVLLLAISLGIAAVIYEVWLRGSLVY
Ga0265296_1005261Ga0265296_100526110F093357MKKFDQAWRIKRLLAERGETISSLSRKLDRPCGSVANNIYGYRTNAQLRGEIAKFLGCGVGELFEGDISSSRNQA
Ga0265296_1005261Ga0265296_10052614F021446MFKVEQHMKTLSIALMAAFMLVLAATSTGQAEDNNSLDHDPTVGGKYIYRAKHMAQTLFVRGSKLSEINELTLLIEIVGQADVRINCHLLAKRQEGNILIIDYAWYPGGDTYEAKIMGGTIINRKTKGWLVGREEMFVRE
Ga0265296_1007392Ga0265296_10073925F051902MQTDFLRTLGRFFAEAGAAISTPSGDARGHIRVYAGENQIVTRGRNF
Ga0265296_1008165Ga0265296_10081657F062490MAKQFFSGFLMTLVFAAVVIAGLFGIFTLVSYLTGPVGG
Ga0265296_1009631Ga0265296_10096315F089576MFGLPDITVIAMGTVVGIIVLALLYWGLKFNPKSDA
Ga0265296_1013022Ga0265296_10130226F057480MSHLRQVVVWANIHMRIKLLLLIFLTTVLLFLVLTRFPCFAGDEDPCKDQGMTVRNLSFKDIWYKQKDGDCTILKRNYSFNIKPRDEIRLFSDMVCETPYCPACKYSDYKAYDANNDCRVKILPANALADI
Ga0265296_1013781Ga0265296_10137814F089951MMHESGMQHGMQQQEMMMEEIWEALSDDQKKTLMKRMIDAKIMMKEGMIKHFQFKIETMKLVKKMLDEC
Ga0265296_1014439Ga0265296_10144394F036294MGRGSSEEAIVGVKPVAEDDAVTYLRVKLSESDREVGAEGRNM
Ga0265296_1021607Ga0265296_10216072F048873MDQEGMHHCDTCPAFKPLPGEGGTGTCCAAPPAPLQAEQYFRGSSRDLLYGSYPVVGAFPLVGQGDFCMAHPRNRVSFGG
Ga0265296_1024567Ga0265296_10245671F004207VLSVTLFEKTPILQALEGDDDDANITTIANQLNLFN
Ga0265296_1034827Ga0265296_10348273F105254MAEVATIYRIYGNPGVKSPLTNKVARFCTQDAEPNLNNPCKVPPAGAVYDSFRCTDCLGITGDFNQVRDIYLHGDGNFALDWGLDSANGGGLFVGHKDIGDNGLPIDVALHGSNQYAVATGTVGTTGHSIADPTNGHPFYRGEAMPEMDFDDCLADSPLLIDSGPYTDDFYSKAWVFDLRTVPTSQYGRKTAKAAIVTYSIF
Ga0265296_1038520Ga0265296_10385202F040697MQLVEKFVYDKIVDDILKEAAEGYGDLIAAALVHNVSVKSLQTRVVELRDLRAAWIS
Ga0265296_1038520Ga0265296_10385203F064732MEAAAEAALAAAPERCTMPPAQSAERHVKFPSSLMDPGPCIAATATRSTSLQDPLAAPGHPEDTK
Ga0265296_1059277Ga0265296_10592771F026006SLMLLPVFVSQAAAASIDIPTTTLTISKLGDLTLVVKDGVPQTIVVRGLVLSGNNIGFSVNGIPYSGYVALSNDLTLQPGTMPPTFEHNGMLEFVAGDNVLILKYNGTATKTVGLMMLTKTVYTVGDFTVADGTGAFAGLKGMNGTFKLNQVCHIVAGEHPKVGSPVEVTFSGM
Ga0265296_1061083Ga0265296_10610832F035129MKKILFCLFICVISSTGFAASLPQSIAFEFQEHGKFTGIIGKAYVTETAVEIVTFAEKSGEIVPFAFIYTIFEKRSQIEGLYNIKCRNQLGVVSTGIIDIRDPLKPKMTLTSDKGITITNISDGGRKMKKEFLPKLDLGK
Ga0265296_1065402Ga0265296_10654022F100040MTTKQVRPDLEKMISLGRRGIIYPDHMERWEQFKKEWSEEDFVFWDQLMEKMKVDDAGTLKLSSPLSSSEKKWSKNFIHRAEEKRLC
Ga0265296_1068961Ga0265296_10689612F065251MYLRHFVKGRKKYYYIAKAVRKGARVIQKSVLYVGTADTLYEKLITLKKK
Ga0265296_1073847Ga0265296_10738471F050777MEDDIIYEKAVEILNPGRLYFALKAMRSSPVKISFDMGDLNLTSGAVSSLVSIEGNLPEEVQAMQWLVPLEDLKILQDLIPPDTYYWENRALVLEWQCDLVVDSTIDEKNPLETLDQEEEYRDQLLVTNREYRELQMALDDCNSHIPQVLFSIYPDRLNFAFNCSEQDEIVGTMIQLRGQKEAR
Ga0265296_1075732Ga0265296_10757324F094578MINKEKPKWPLSRLKGMYFAMHCWKCKKFELPVEEYEKRCEENIQKIINSLEIKEMKFKQFNQIIKNSTFCKFEKRDFNNNCPICKKLGT
Ga0265296_1082311Ga0265296_10823112F065251MYLRSFKHGKKRYYFIAKAVRKGKKVIQKSILYVGSIDSLYEKLI
Ga0265296_1085080Ga0265296_10850802F054136MIENKAQLLTDLAFIGSKVQAKTNVYLFSGAAFMWHGLKDATKDIDICCSYEEADRIVSVLRMFGNMESVTGINDVHFLRIIFKSFSVQIFIKEIWIGDEYQLLEAAPCDPLTFGGITFLIPDVKTLIMIKDRQIQALYNEWKKLAGERCI
Ga0265296_1094390Ga0265296_10943901F069483RPPHQRSDGASGQGGSNSLKWRAPSERIRTASEIPIEVDLTDEDAIQKYMEISEKALHLRRLGMAYAKIAERLGCNLWMAKKATRRGNPA
Ga0265296_1102621Ga0265296_11026212F072481MIPGSKQCDDMKARKNETKPPFRPDLESEKQVLCEHCGETYKEKEIKWDTVREMWVCKNHPKCDGSVLQLNIRHID
Ga0265296_1128011Ga0265296_11280112F088316MALYRVREGYVVHLENSKTLTPGTVFEPDQEVLDGQGWKIEPAREDPPVKEKEPEKPETKEVTRAPQDRAMKKEGVKTK
Ga0265296_1150709Ga0265296_11507092F038735MKWFIDSMIGYWVLLLTISLGIAAVIYEVWLRDTLLK
Ga0265296_1154078Ga0265296_11540781F080090MLYNLLANTWSEPLRVDNELSNINSWREVYEKDEAALRP
Ga0265296_1183779Ga0265296_11837792F036294MDRGSSDEAIVGVKPIADDDAVTYPRVKLSVSDREVGAEGRNM
Ga0265296_1187818Ga0265296_11878181F097616MNGPLLISLLPPERSWDSAAAISGSTPFIAILLLIGFLLSLFLRHPGR
Ga0265296_1188183Ga0265296_11881832F046735MLLNVFERLLIRNIVPNIQGWNYGHMKEARELIEGLFTPQEETDLAFNQEGTQVKWKVKHEDGTDIPQERDIPISEGLNKKIGKFLKQLDTENRLGFEHYTLCGKFGVGDEKK
Ga0265296_1200142Ga0265296_12001422F102533LLIFKFEFMKSLVKKKTQKTSTKKVAQCCAKTSKTIVGCHD
Ga0265296_1218736Ga0265296_12187361F067652MNVGDPNMTGDVHLLMRESDMPVVVKITEKVKAEGAKGHYYKRSFKEC
Ga0265296_1264363Ga0265296_12643631F033648MGIKHVHGVTTSLNGCKVEIDGDVEYSLIPPRITGFHGSVHLSGGTDCPNGDLYFGIEPNGKVAPILPVDEGKP
Ga0265296_1270398Ga0265296_12703981F095421RWPEAELHQCEWHLQHALDRLLAKEARSDAGGELQELREYAESALVGPSSWHRFARAAKAAENESLDRWIAVNAATIETQFVCRALTPHRAPDMPLTTAALDQITRPISAALYPRRYALKNRERLNRLLMLLQLHVNGDDDVQAYARAIRLHLEANGGRPLAHRRAVTDLGNSPSLR
Ga0265296_1277570Ga0265296_12775702F008168KCKMPKNVLRITTHLPSIPGWLKINNSITIPLPLKSAKELAKKLLEVQEDVEIELNLATGKETNVEIKFELKKEE
Ga0265296_1288016Ga0265296_12880161F055825MADLAIIEHHPQRVLEAFRRGEFDQIEIIGEADEKEFFELCF
Ga0265296_1324583Ga0265296_13245831F036991MRDMSSFVAHDLSGLRLSLMEVADATDRDATEDPEDAI

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