Metagenome Family F089576

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F089576
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	36 residues
Representative Sequence	MFGLPDITIIAVGGVVLVIIVALLYWGLTFKGHD
Number of Associated Samples	60
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	41.51 %
% of genes near scaffold ends (potentially truncated)	13.76 %
% of genes from short scaffolds (< 2000 bps)	65.14 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Archaea (84.404 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge (22.018 % of family members)
Environment Ontology (ENVO)	Unclassified (65.138 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (53.211 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.94% β-sheet: 0.00% Coil/Unstructured: 58.06%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00474	SSF	29.36
PF00999	Na_H_Exchanger	4.59
PF00072	Response_reg	2.75
PF00582	Usp	2.75
PF02652	Lactate_perm	2.75
PF01593	Amino_oxidase	2.75
PF13419	HAD_2	2.75
PF13173	AAA_14	1.83
PF00689	Cation_ATPase_C	1.83
PF10369	ALS_ss_C	1.83
PF14539	DUF4442	1.83
PF02775	TPP_enzyme_C	1.83
PF12399	BCA_ABC_TP_C	1.83
PF13710	ACT_5	0.92
PF02653	BPD_transp_2	0.92
PF01728	FtsJ	0.92
PF03441	FAD_binding_7	0.92
PF07747	MTH865	0.92
PF13520	AA_permease_2	0.92
PF12544	LAM_C	0.92
PF10114	PocR	0.92
PF02776	TPP_enzyme_N	0.92
PF00654	Voltage_CLC	0.92
PF01202	SKI	0.92
PF00209	SNF	0.92
PF13414	TPR_11	0.92
PF00005	ABC_tran	0.92
PF02086	MethyltransfD12	0.92
PF09918	DUF2148	0.92
PF13180	PDZ_2	0.92
PF01243	Putative_PNPOx	0.92
PF04885	Stig1	0.92
PF13248	zf-ribbon_3	0.92
PF13635	DUF4143	0.92
PF13426	PAS_9	0.92
PF13432	TPR_16	0.92
PF13847	Methyltransf_31	0.92
PF11667	DUF3267	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	4.59
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	4.59
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	4.59
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	4.59
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	4.59
COG1620	L-lactate permease	Energy production and conversion [C]	2.75
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	1.83
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.92
COG0293	23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ	Translation, ribosomal structure and biogenesis [J]	0.92
COG0338	DNA-adenine methylase	Replication, recombination and repair [L]	0.92
COG0415	Deoxyribodipyrimidine photolyase	Replication, recombination and repair [L]	0.92
COG0733	Na+-dependent transporter, SNF family	General function prediction only [R]	0.92
COG1189	Predicted rRNA methylase YqxC, contains S4 and FtsJ domains	Translation, ribosomal structure and biogenesis [J]	0.92
COG3392	Adenine-specific DNA methylase	Replication, recombination and repair [L]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.40 %
Unclassified	root	N/A	15.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.40 %
Unclassified	root	N/A	15.60 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	84.40 %
Unclassified	root	N/A	15.60 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	84.40 %
Unclassified	root	N/A	15.60 %

Name	Rank	Taxonomy	Distribution
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	83.49 %
Unclassified	root	N/A	15.60 %

Name	Rank	Taxonomy	Distribution
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	83.49 %
Unclassified	root	N/A	15.60 %

Name	Rank	Taxonomy	Distribution
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	77.06 %
Unclassified	root	N/A	15.60 %

Name	Rank	Taxonomy	Distribution
Methanoregulaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	44.95 %
Unclassified	root	N/A	15.60 %
unclassified Methanomicrobiales	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales	1.83 %
Methanospirillaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Methanoregula	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	42.20 %
Unclassified	root	N/A	15.60 %
Methanospirillum	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae → Methanospirillum	0.92 %
Methanomicrobiales archaeon HGW-Methanomicrobiales-1	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	0.92 %
Methanomicrobiales archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	0.92 %

Name	Rank	Taxonomy	Distribution
Methanoregula formicica	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	31.19 %
Unclassified	root	N/A	15.60 %
Methanoregula boonei	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	3.67 %
Methanospirillum hungatei	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae → Methanospirillum → Methanospirillum hungatei	0.92 %
Methanomicrobiales archaeon HGW-Methanomicrobiales-1	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	0.92 %
Methanomicrobiales archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000032\|Draft_c0052611	Not Available	811	Open in IMG/M
3300000558\|Draft_10013280	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	3020	Open in IMG/M
3300000558\|Draft_10019479	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	15591	Open in IMG/M
3300000558\|Draft_10161562	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	5103	Open in IMG/M
3300000568\|Draft_10063550	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	5711	Open in IMG/M
3300000568\|Draft_10585204	Not Available	1147	Open in IMG/M
3300001213\|JGIcombinedJ13530_100072309	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	900	Open in IMG/M
3300001213\|JGIcombinedJ13530_100528614	Not Available	538	Open in IMG/M
3300001213\|JGIcombinedJ13530_100629179	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	2526	Open in IMG/M
3300001213\|JGIcombinedJ13530_100643864	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1022	Open in IMG/M
3300001213\|JGIcombinedJ13530_100695153	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2625	Open in IMG/M
3300001213\|JGIcombinedJ13530_101065547	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	596	Open in IMG/M
3300001213\|JGIcombinedJ13530_101656269	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	666	Open in IMG/M
3300001213\|JGIcombinedJ13530_101894767	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	640	Open in IMG/M
3300001213\|JGIcombinedJ13530_102709642	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	737	Open in IMG/M
3300001213\|JGIcombinedJ13530_103411433	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	614	Open in IMG/M
3300001279\|JGI20214J14112_1008449	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1722	Open in IMG/M
3300001368\|JGI20225J14565_1035626	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	1313	Open in IMG/M
3300001580\|Draft_10162155	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1066	Open in IMG/M
3300001605\|Draft_10703133	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	504	Open in IMG/M
3300001866\|JGI24729J20445_1000537	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	19612	Open in IMG/M
3300001866\|JGI24729J20445_1008859	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2544	Open in IMG/M
3300001866\|JGI24729J20445_1048991	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	605	Open in IMG/M
3300001866\|JGI24729J20445_1057986	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	532	Open in IMG/M
3300001881\|JGI24728J21555_1010028	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	2842	Open in IMG/M
3300002172\|JGI24730J26740_1000077	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	92324	Open in IMG/M
3300002220\|MLSBCLC_10113155	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	4129	Open in IMG/M
3300002220\|MLSBCLC_10166059	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1522	Open in IMG/M
3300002220\|MLSBCLC_10351336	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae → Methanospirillum → Methanospirillum hungatei	1619	Open in IMG/M
3300003541\|JGI20214J51650_10319230	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1079	Open in IMG/M
3300004775\|Ga0007798_10065989	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	806	Open in IMG/M
3300004776\|Ga0007800_10078852	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	794	Open in IMG/M
3300004776\|Ga0007800_10096380	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	717	Open in IMG/M
3300005325\|Ga0074199_1032424	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1252	Open in IMG/M
3300005472\|Ga0074280_136	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	14803	Open in IMG/M
3300005645\|Ga0077109_1082376	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	919	Open in IMG/M
3300008944\|Ga0115987_1014007	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	866	Open in IMG/M
3300008945\|Ga0115988_1000859	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	4678	Open in IMG/M
3300009091\|Ga0102851_11804176	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	689	Open in IMG/M
3300009168\|Ga0105104_10919344	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	514	Open in IMG/M
3300009518\|Ga0116128_1074744	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	1029	Open in IMG/M
3300009692\|Ga0116171_10004487	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	12550	Open in IMG/M
3300009692\|Ga0116171_10009058	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	8231	Open in IMG/M
3300009692\|Ga0116171_10022866	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	4539	Open in IMG/M
3300009692\|Ga0116171_10060217	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	2414	Open in IMG/M
3300009692\|Ga0116171_10116109	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	1592	Open in IMG/M
3300009692\|Ga0116171_10193133	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1155	Open in IMG/M
3300009692\|Ga0116171_10218231	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	1070	Open in IMG/M
3300009692\|Ga0116171_10296715	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	883	Open in IMG/M
3300009692\|Ga0116171_10310519	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	858	Open in IMG/M
3300009692\|Ga0116171_10353521	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	791	Open in IMG/M
3300009692\|Ga0116171_10439009	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	690	Open in IMG/M
3300009692\|Ga0116171_10500087	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	636	Open in IMG/M
3300009692\|Ga0116171_10546919	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	601	Open in IMG/M
3300009694\|Ga0116170_10651397	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	552	Open in IMG/M
3300009694\|Ga0116170_10680100	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	537	Open in IMG/M
3300009704\|Ga0116145_1072795	Not Available	1517	Open in IMG/M
3300010302\|Ga0116202_10457620	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	567	Open in IMG/M
3300010319\|Ga0136653_10446280	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	568	Open in IMG/M
3300010339\|Ga0074046_10044819	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	2956	Open in IMG/M
3300010352\|Ga0116247_10005721	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	17209	Open in IMG/M
3300010352\|Ga0116247_10065006	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	3352	Open in IMG/M
3300010429\|Ga0116241_10511968	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	938	Open in IMG/M
3300012886\|Ga0160425_1004141	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	10030	Open in IMG/M
3300012886\|Ga0160425_1006593	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	6812	Open in IMG/M
3300012886\|Ga0160425_1018996	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	2806	Open in IMG/M
3300012886\|Ga0160425_1114880	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	625	Open in IMG/M
3300012931\|Ga0153915_10000004	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	322542	Open in IMG/M
3300012931\|Ga0153915_10000010	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	213048	Open in IMG/M
3300012931\|Ga0153915_10031548	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	5314	Open in IMG/M
3300012931\|Ga0153915_11747271	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	728	Open in IMG/M
3300014204\|Ga0172381_10000055	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	117369	Open in IMG/M
3300014204\|Ga0172381_10003756	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	15923	Open in IMG/M
3300014204\|Ga0172381_10310091	Not Available	1249	Open in IMG/M
3300014204\|Ga0172381_10575681	All Organisms → cellular organisms → Archaea → Euryarchaeota	863	Open in IMG/M
3300014205\|Ga0172380_10239763	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	1401	Open in IMG/M
3300014205\|Ga0172380_10548307	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	850	Open in IMG/M
3300014205\|Ga0172380_11268894	Not Available	515	Open in IMG/M
3300014258\|Ga0075315_1074793	Not Available	606	Open in IMG/M
3300014309\|Ga0075317_1030558	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1024	Open in IMG/M
3300014309\|Ga0075317_1123397	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	585	Open in IMG/M
3300014494\|Ga0182017_10007061	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	8212	Open in IMG/M
3300014502\|Ga0182021_10291104	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1921	Open in IMG/M
3300022553\|Ga0212124_10124102	Not Available	1436	Open in IMG/M
3300022555\|Ga0212088_10736346	Not Available	580	Open in IMG/M
3300025436\|Ga0208103_1005996	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1898	Open in IMG/M
3300025858\|Ga0209099_1191998	Not Available	795	Open in IMG/M
3300025858\|Ga0209099_1201016	Not Available	769	Open in IMG/M
3300025858\|Ga0209099_1219962	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	722	Open in IMG/M
3300025867\|Ga0209098_1010250	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	6205	Open in IMG/M
3300025867\|Ga0209098_1238595	Not Available	727	Open in IMG/M
3300027373\|Ga0209016_1000080	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	144164	Open in IMG/M
3300027887\|Ga0208980_10017587	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	4162	Open in IMG/M
3300027958\|Ga0209749_1038603	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1579	Open in IMG/M
3300028032\|Ga0265296_1009631	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	6729	Open in IMG/M
3300028162\|Ga0268278_1035489	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1356	Open in IMG/M
3300028625\|Ga0302251_1029879	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1202	Open in IMG/M
3300028628\|Ga0302249_1051848	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	968	Open in IMG/M
(restricted) 3300029268\|Ga0247842_10287572	Not Available	885	Open in IMG/M
(restricted) 3300029286\|Ga0247841_10112126	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2210	Open in IMG/M
3300029959\|Ga0272380_10250162	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	1261	Open in IMG/M
3300031726\|Ga0302321_101142411	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	891	Open in IMG/M
3300032163\|Ga0315281_10270017	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1868	Open in IMG/M
3300034090\|Ga0326723_0008503	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	3977	Open in IMG/M
3300034090\|Ga0326723_0317997	Not Available	700	Open in IMG/M
3300034091\|Ga0326724_0162848	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	1367	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	54.13%
Environmental	Environmental	45.87%

Habitat	Taxonomy	Distribution
Wastewater	Engineered → Wastewater	33.03%
Aquatic	Environmental → Aquatic	32.11%
Terrestrial	Environmental → Terrestrial	13.76%
Bioremediation	Engineered → Bioremediation	9.17%
Solid Waste	Engineered → Solid Waste	6.42%
Bioreactor	Engineered → Bioreactor	4.59%
Lab Enrichment	Engineered → Lab Enrichment	0.92%

Habitat	Taxonomy	Distribution
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	23.85%
Freshwater	Environmental → Aquatic → Freshwater	17.43%
Marine	Environmental → Aquatic → Marine	12.84%
Soil	Environmental → Terrestrial → Soil	9.17%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	9.17%
Tetrachloroethylene And Derivatives	Engineered → Bioremediation → Tetrachloroethylene And Derivatives	9.17%
Landfill	Engineered → Solid Waste → Landfill	6.42%
Peat	Environmental → Terrestrial → Peat	4.59%
Anaerobic	Engineered → Bioreactor → Anaerobic	4.59%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.83%
Defined Media	Engineered → Lab Enrichment → Defined Media	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	23.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	12.84%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	9.17%
Tetrachloroethylene	Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene	9.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.34%
Lake	Environmental → Aquatic → Freshwater → Lake	6.42%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	6.42%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.59%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	4.59%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.67%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	23.85%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	12.84%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	9.17%
Unclassified	Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified	9.17%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	6.42%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.59%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	22.02%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	12.84%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	9.17%
Bioremediated Contaminated Groundwater	Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater	9.17%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	6.42%
Bioreactor	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor	4.59%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	3.67%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.67%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	3.67%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.75%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.75%
Anoxic Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water	1.83%
Sediment	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment	1.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.83%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.83%
Activated Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.92%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.92%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.92%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.92%
Brackish Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.92%
Hydrocarbon Resource Environments	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000032	Oil sands microbial community from Northern Alberta which degrade Naphthaline	Engineered	Open in IMG/M
3300000558	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011	Engineered	Open in IMG/M
3300000568	Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:	Engineered	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001279	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300001368	Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4	Engineered	Open in IMG/M
3300001580	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Suncor taillings pond 6 2012TP6_6	Engineered	Open in IMG/M
3300001605	Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin	Engineered	Open in IMG/M
3300001866	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23	Engineered	Open in IMG/M
3300001881	Bioremediated contaminated groundwater microbial communities from EPA Superfund site, New Mexico - SAE3-05	Engineered	Open in IMG/M
3300002172	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47	Engineered	Open in IMG/M
3300002220	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011	Engineered	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300004775	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M	Environmental	Open in IMG/M
3300004776	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M	Environmental	Open in IMG/M
3300005325	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47	Engineered	Open in IMG/M
3300005472	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Cattail	Environmental	Open in IMG/M
3300005645	Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)	Environmental	Open in IMG/M
3300008944	T18 (1) (Live), Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom ? benzoate enriched in lab, transferred 6 times DE NOVO (2)	Environmental	Open in IMG/M
3300008945	T18 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2)	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009692	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG	Engineered	Open in IMG/M
3300009694	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG	Engineered	Open in IMG/M
3300009704	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG1_MetaG	Engineered	Open in IMG/M
3300010302	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG	Environmental	Open in IMG/M
3300010319	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010352	AD_JPHWca	Engineered	Open in IMG/M
3300010429	AD_USRAca	Engineered	Open in IMG/M
3300012886	Microbial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 8 (Illumina Assembly)	Engineered	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014204	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG	Engineered	Open in IMG/M
3300014205	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG	Engineered	Open in IMG/M
3300014258	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D1	Environmental	Open in IMG/M
3300014309	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D1	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300022553	Powell_combined assembly	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300025436	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (SPAdes)	Environmental	Open in IMG/M
3300025858	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025867	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG (SPAdes)	Engineered	Open in IMG/M
3300027373	Bioremediated contaminated groundwater microbial communities from EPA Superfund site, New Mexico - SAE3-05 (SPAdes)	Engineered	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027958	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47 (SPAdes)	Engineered	Open in IMG/M
3300028032	Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #1	Environmental	Open in IMG/M
3300028162	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_55m	Environmental	Open in IMG/M
3300028625	Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Gln	Engineered	Open in IMG/M
3300028628	Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Val	Engineered	Open in IMG/M
3300029268 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19m	Environmental	Open in IMG/M
3300029286 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_18m	Environmental	Open in IMG/M
3300029959	EPA Superfund site combined assembly	Engineered	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M
3300034170	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_16	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Draft_00526111	3300000032	Hydrocarbon Resource Environments	MFGLPDITVIAIGSVVVVIIIALLYWGLKFNPESDS*
Draft_100132804	3300000558	Hydrocarbon Resource Environments	MFGLPDITVIALGTVVVLIIIALVYWGLKFNPESSS*
Draft_100194799	3300000558	Hydrocarbon Resource Environments	MLGLPDITIFAVGGVVLIITAALLYWGLTFKGHD*
Draft_101615622	3300000558	Hydrocarbon Resource Environments	MLGLPDITIFAVGGVVLVITAALLYWGLTFKGHD*
Draft_100635506	3300000568	Hydrocarbon Resource Environments	MFGLPDITVIAIGSVVVVIIIALLXWGLKFNPESDS*
Draft_105852042	3300000568	Hydrocarbon Resource Environments	MYFDIMLGLPDITIVSVGITIVVVIAALLFWGLTFKGYD*
JGIcombinedJ13530_1000723092	3300001213	Wetland	MFGLPEITILVVGITVIGVIAALLYWGLTFKGHD*
JGIcombinedJ13530_1005286141	3300001213	Wetland	MFGLPDITILVFGVVTLVAVIALLYWGLTFEGHD*
JGIcombinedJ13530_1006291793	3300001213	Wetland	MFGLPDITIIAVGGVVLVITAALVYWGLTFKGHD*
JGIcombinedJ13530_1006438642	3300001213	Wetland	MFGLPDITIIAVGGVVLVITAALLYWGLTFTGHD*
JGIcombinedJ13530_1006951531	3300001213	Wetland	MFGLPDITIIAVGGTVLIIITALTYWGLTFMGHD*
JGIcombinedJ13530_1010655472	3300001213	Wetland	MFGLPDITVIAVGGVVLVIVVALLYWGLTFKGHD*
JGIcombinedJ13530_1016562692	3300001213	Wetland	MFGLPDITIIAVGGVVLVITAALLYWGLTFKGHD*
JGIcombinedJ13530_1018947672	3300001213	Wetland	MFGLPDITIIAVGGVVLVVIAALLYWGLTFGGHD*
JGIcombinedJ13530_1027096421	3300001213	Wetland	MFGLPDITVFSVGGTVLVILIALTYWGLTFKGHD*
JGIcombinedJ13530_1034114332	3300001213	Wetland	MLGLPDITIIAVGGVVLIITALLLYWGLTFKGHD*
JGI20214J14112_10084492	3300001279	Wetland	MFGLPDITIIAVGGVVLVVIAALLYWGLTFRGHD*
JGI20225J14565_10356262	3300001368	Bioreactor	MFGLPDITIIVFGGVTLVAIVALLYWGLTFRGHD*
Draft_101621551	3300001580	Hydrocarbon Resource Environments	MIGLPDITVISIGTVVVVIIIALVYWGLKFNPESDS*
Draft_107031331	3300001605	Hydrocarbon Resource Environments	GLPDITVIALGTVVVVIIIALVYWGLKFNPEPES*
JGI24729J20445_10005372	3300001866	Bioremediated Contaminated Groundwater	MFGLPDITIAAVGGVVVIVIIALLYWGLTFQGHD*
JGI24729J20445_10088592	3300001866	Bioremediated Contaminated Groundwater	MFGLPDITIIVFGIVTIIAIALLVWWGLIFKGHD*
JGI24729J20445_10489911	3300001866	Bioremediated Contaminated Groundwater	MFGLPDITVLSMGVVVGLIVLALLYWGLKFNPKSDA*
JGI24729J20445_10579862	3300001866	Bioremediated Contaminated Groundwater	MLGLPDITIIAVGGIVVVIIALLLYWGLTFRGHD*
JGI24728J21555_10100282	3300001881	Bioremediated Contaminated Groundwater	MFGLPDITVAVVGGVVLVILAALVYWGLTFRGHD*
JGI24730J26740_100007734	3300002172	Bioremediated Contaminated Groundwater	MFGLPDITILVFGGVTVVAIVALLYWGLTFKGHD*
MLSBCLC_101131554	3300002220	Hydrocarbon Resource Environments	MFGLPDVTIAAVGSVVIVVIIALLYWGFTFRGHD*
MLSBCLC_101660592	3300002220	Hydrocarbon Resource Environments	MIGLPDITVIALGTVVVVIIIALVYWGLKFNPEPES*
MLSBCLC_103513363	3300002220	Hydrocarbon Resource Environments	MDMFGLPDITILTVGGAVVIIILLLLGWGLFFTGEDS*
JGI20214J51650_103192302	3300003541	Wetland	LTSDKQVLNCIFGLPDITVLIWGVVIGLIVLALLYGGLKFNPKSDA*
Ga0007798_100659891	3300004775	Freshwater	MLNVNMAHLIRNKMLGLPDITVYAVSGVVGIVILALLYWGLTFRGHD*
Ga0007800_100788522	3300004776	Freshwater	MLNVNMAHLIRNKMLGLPDITVSAVSVVVVIIIIALLYWGLTFRGHD*
Ga0007800_100963802	3300004776	Freshwater	MLNVNMAHLIRNKMFGLPDITVSAVSVVVVIIIIALLYWGLTFRGHD*
Ga0074199_10324242	3300005325	Bioremediated Contaminated Groundwater	MLNVNMAHVIRNKMLGLPNITVYAVSGVVVIIILALLYWGLTFRGHD*
Ga0074280_13613	3300005472	Wetland	MFGLPDVTIIVFAGVTLVAIVALLYWGLTFGGHD*
Ga0077109_10823762	3300005645	Brackish Water	MFGLPDITIAAVGGVVIIVIIALLYWGITFRGHD*
Ga0115987_10140071	3300008944	Sediment	TMFGLPDVTIAAVGSVVVIVIIALLYWGLTFRGHD*
Ga0115988_10008592	3300008945	Sediment	MFGLPDITIAAVGIVVVIVIIALLYWGLTFRGHD*
Ga0102851_118041762	3300009091	Freshwater Wetlands	MFGLPDITVMAIGSVVVVIIIALLYWGLKFNPESDS*
Ga0105104_109193442	3300009168	Freshwater Sediment	MLGLPDITIIAVGGVVVVIIALLLYWGLTFRGHD*
Ga0116128_10747441	3300009518	Peatland	MFGLPDITIIVFGGLTVIAIAALLYWGLTFGGHD*
Ga0116171_1000448710	3300009692	Anaerobic Digestor Sludge	MFGLPDITIIAVGGVVLAITAALVYWGLTFQGHD*
Ga0116171_100090587	3300009692	Anaerobic Digestor Sludge	MFGLPDITILVFGGVTLVAIVALLYWGLTFGGHD*
Ga0116171_100228663	3300009692	Anaerobic Digestor Sludge	MFGLPDITIAVVGFVVIVSFAALLYWGLTFKGHD*
Ga0116171_100602171	3300009692	Anaerobic Digestor Sludge	MFGLPDITLIVFGGVTIIAIAALLYWGLSFGGHD*
Ga0116171_101161091	3300009692	Anaerobic Digestor Sludge	MFGLPDITILVFGGVTVIAIAALLYWGLTFGGHD*
Ga0116171_101931331	3300009692	Anaerobic Digestor Sludge	MFGLPDITVLSMGIVVGVIILALLYWGLTFNPEPDN*
Ga0116171_102182312	3300009692	Anaerobic Digestor Sludge	MFGVPDLTILVFGGVTLVAFAALLYWGLTFGGHD*
Ga0116171_102967152	3300009692	Anaerobic Digestor Sludge	MFGLPDITIMAVGGVVLVIIVLLLYWGLTFKGHD*
Ga0116171_103105192	3300009692	Anaerobic Digestor Sludge	MLGLPDITIIAVGGVVLVIVVALLYWGLTFKGHD*
Ga0116171_103535212	3300009692	Anaerobic Digestor Sludge	MFGLPDITIIAVGGVVLVITAALLYWGMTFKGHD*
Ga0116171_104390092	3300009692	Anaerobic Digestor Sludge	MFGLPDITVLSMGVVVGLIVLALLYWGLKFNPKSDT*
Ga0116171_105000872	3300009692	Anaerobic Digestor Sludge	MFGLPDITVIAVGSVVIVIIIALLYWGLKFNTESDS*
Ga0116171_105469192	3300009692	Anaerobic Digestor Sludge	MLGLPDITIIAVGIVLVVVIAALLYWGISFRGHD*
Ga0116170_106513972	3300009694	Anaerobic Digestor Sludge	MFGLPEITIFAVGGVVLVVTAALLYWGLTFRRHD*
Ga0116170_106801002	3300009694	Anaerobic Digestor Sludge	MFGLPDITVIAIGSVVVVIIIALLYWGLKFNPESSS*
Ga0116145_10727952	3300009704	Anaerobic Digestor Sludge	MFGLPDITVASVGGVFLLSVIGLLLWGLRFQKVKV*
Ga0116202_104576202	3300010302	Anoxic Lake Water	MLGLPDITIYAVGIVVVIIIAALLYWGLTFRGHD*
Ga0136653_104462802	3300010319	Anoxic Lake Water	CEDNMLGLPDITIYAVGIVVVIIIAALLYWGLTFRGHD*
Ga0074046_100448193	3300010339	Bog Forest Soil	MFGLPDITILAVGGVTVIAILALLYWGLTFRGHD*
Ga0116247_1000572121	3300010352	Anaerobic Digestor Sludge	MFGLPDITVLSMGIVVGVIILALLYWGLKFNPKSDA*
Ga0116247_100650063	3300010352	Anaerobic Digestor Sludge	MFGLPDITILVVGGVVLVIIIALLYWGLTFKGHD*
Ga0116241_105119682	3300010429	Anaerobic Digestor Sludge	MFGLPEITIIAVGGVVLIVTAALLYWGLTFKGHD*
Ga0160425_10041413	3300012886	Bioreactor	MFGLPDITILVFGGVTLVAFVALLYWGLTFKGHD*
Ga0160425_10065932	3300012886	Bioreactor	MFGLPDITILVFGGVTLVAIVALLYWGLTFKGHD*
Ga0160425_10189962	3300012886	Bioreactor	MFGLPDITILVYGGVTLVAIVALLYWGLTFKGHD*
Ga0160425_11148802	3300012886	Bioreactor	MFGLPDITILVFGGVTIVAIVALLYWGLTFTGHD*
Ga0153915_10000004221	3300012931	Freshwater Wetlands	MFGLPDITIMAVGGVVLVITIALLYWGLTFKGHD*
Ga0153915_10000010111	3300012931	Freshwater Wetlands	MFGLPDITIIAVGGVVLVIIVALLYWGLTFKGHD*
Ga0153915_100315485	3300012931	Freshwater Wetlands	MFGLPDITILVFGGVTLVAVIALLYWGLTFEGHD*
Ga0153915_117472712	3300012931	Freshwater Wetlands	MLGLPDITILAVGGVVLVIIVALLYWGLTFKGHD*
Ga0172381_1000005512	3300014204	Landfill Leachate	MFGVPNLTILVFGGVTLVAFAALLYWGLTFGGHD*
Ga0172381_1000375610	3300014204	Landfill Leachate	MFGLPDITIIAVGGVVLVIVVALLYWGLTFKGHD*
Ga0172381_103100911	3300014204	Landfill Leachate	MFGLPDITVIAMGTVVGIIVLALLYWGLKFNPKSDA*
Ga0172381_105756812	3300014204	Landfill Leachate	MLGLPDITVILMGNVAGIIILVLLYWGLKYNPESDA*
Ga0172380_102397632	3300014205	Landfill Leachate	MFGLPDITILVFGGVTVVAIVALLYWGLTFKEHD*
Ga0172380_105483072	3300014205	Landfill Leachate	MLYVNMAHVIRNKMLGLPDITIYAVSGVVVIIILALLYWGLTFRGHD*
Ga0172380_112688941	3300014205	Landfill Leachate	MFGLPDITILAVGGVTIVAIAALLYWGLTFGGHD*
Ga0075315_10747931	3300014258	Natural And Restored Wetlands	MLGLPDITIAAVGIVVVIVIIALLYWGFIFRGHD*
Ga0075317_10305582	3300014309	Natural And Restored Wetlands	MFGLPDITIAAVGIVVVIVLIALLYWGFTFRGHD*
Ga0075317_11233972	3300014309	Natural And Restored Wetlands	MFGLPDITVAVVGGVVLVIIAALVYWGLTFRGHD*
Ga0182017_100070615	3300014494	Fen	MFGLPDITVLAVGGVTLVVIAALLYWGLTFRGHD*
Ga0182021_102911041	3300014502	Fen	MFGLPDITIIAVGGVVLIITAALLYWGLTFKGHD*
Ga0212124_101241021	3300022553	Freshwater	GTMFGLPDITILVFGAVTIIAIAALVFWGITFKGHD
Ga0212088_107363462	3300022555	Freshwater Lake Hypolimnion	TMFGLPDITIIVFGVVTIIAIAALVYWGITFKGHD
Ga0208103_10059962	3300025436	Freshwater	MLNVNMAHLIRNKMFGLPDITVSAVSVVVVIIIIALLYWGLTFRGHD
Ga0209099_11919982	3300025858	Anaerobic Digestor Sludge	KNYLLTCMFGLPDITIIVMGTVVGISILALLYWGLTFNPTSDS
Ga0209099_12010161	3300025858	Anaerobic Digestor Sludge	KNYLLTCMFGLPDITIIVMGTVVGISILALLYWGLTFNPTSDN
Ga0209099_12199621	3300025858	Anaerobic Digestor Sludge	MFGLPDITIIVMGTVVGISILALLYWGLTFNPTSD
Ga0209098_10102507	3300025867	Anaerobic Digestor Sludge	MFGLPDITVLSMGIVVGVIILALLYWGLTFNPEPDN
Ga0209098_12385952	3300025867	Anaerobic Digestor Sludge	MFGLPDITVISMGVVVGFIILALLYWGLKFNPESDA
Ga0209016_1000080101	3300027373	Bioremediated Contaminated Groundwater	MFGLPDITVLSMGVVVGLIVLALLYWGLKFNPKSDA
Ga0208980_100175874	3300027887	Wetland	MDRMFGLPDITVIAVGTTVLIVIAALIYWGITFEGHD
Ga0209749_10386032	3300027958	Bioremediated Contaminated Groundwater	MAHVIRNKMLGLPNITVYAVSGVVVIIILALLYWGLTFRGHD
Ga0265296_10096315	3300028032	Groundwater	MFGLPDITVIAMGTVVGIIVLALLYWGLKFNPKSDA
Ga0268278_10354891	3300028162	Saline Water	MLGLPDITWIAYGTVAVVAVIVLIYWGLKFNPKSDA
Ga0302251_10298791	3300028625	Activated Sludge	MLFGLPEITIIAVGGVVLVITAALVYWGLTFEGHD
Ga0302249_10518483	3300028628	Activated Sludge	MFGLPDITVIAIGSVVVVIIIALLYWGLKFNPESDS
(restricted) Ga0247842_102875721	3300029268	Freshwater	VIRNKMLGLPNITVYAVSGVVVIIILALLYWGLTFRGHD
(restricted) Ga0247841_101121263	3300029286	Freshwater	MAHLIRNKMLGLPDITVYAVSGVVVIIILALLYWGLTFRGHD
Ga0272380_102501622	3300029959	Bioremediated Contaminated Groundwater	MKYLLNYMFGLPDITVIAMGTVVGIIVLALLYWGLKFNPKSDA
Ga0302321_1011424111	3300031726	Fen	GIMFGLPDITIIAVGGVVLIITAALLYWGLTFKGHD
Ga0315281_102700173	3300032163	Sediment	RMFGLPDITILTVGITIVVVIAALLYWGLTFKGHD
Ga0326723_0008503_2_115	3300034090	Peat Soil	EVNMFGLPDITIIAVGGVVLVVTAALLYWGLTFKGHD
Ga0326723_0157810_692_826	3300034090	Peat Soil	MLTYHKLFDKMFGLPDITILTVGITLIVVIAALLYWGLTFKGHD
Ga0326723_0317997_481_594	3300034090	Peat Soil	MDRMFGLPDITILTVGITIVIAIAALLYWGLTFKGHD
Ga0326724_0162848_50_175	3300034091	Peat Soil	MTSYSGTMFGLPDITIIAVGGVVIIVIIALVYWGLTFRGHD
Ga0370487_0050045_2_124	3300034170	Untreated Peat Soil	MLAYHKLIDSMFGLPDITIIVVGATVIIVIAALLYWGITFK
Ga0370501_0014390_2010_2144	3300034195	Untreated Peat Soil	MLAYHKLIDSMFGLPDITIIVVGATVIIVIAALLYWGITFKGHD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters