Metagenome / Metatranscriptome Family F092111

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092111
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	50 residues
Representative Sequence	MTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGIITFP
Number of Associated Samples	87
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	83.18 %
% of genes near scaffold ends (potentially truncated)	24.30 %
% of genes from short scaffolds (< 2000 bps)	74.77 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (71.028 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment (11.215 % of family members)
Environment Ontology (ENVO)	Unclassified (31.776 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (28.972 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.32% β-sheet: 0.00% Coil/Unstructured: 48.68%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13847	Methyltransf_31	18.69
PF00881	Nitroreductase	8.41
PF08241	Methyltransf_11	7.48
PF09360	zf-CDGSH	6.54
PF11213	DUF3006	4.67
PF13749	HATPase_c_4	1.87
PF03358	FMN_red	0.93
PF02596	DUF169	0.93
PF01047	MarR	0.93
PF00258	Flavodoxin_1	0.93
PF01568	Molydop_binding	0.93
PF07690	MFS_1	0.93
PF09970	DUF2204	0.93
PF00753	Lactamase_B	0.93
PF13649	Methyltransf_25	0.93
PF14701	hDGE_amylase	0.93
PF13673	Acetyltransf_10	0.93
PF00215	OMPdecase	0.93
PF13005	zf-IS66	0.93
PF08004	DUF1699	0.93
PF07661	MORN_2	0.93
PF00174	Oxidored_molyb	0.93
PF12802	MarR_2	0.93
PF05016	ParE_toxin	0.93
PF13426	PAS_9	0.93
PF02805	Ada_Zn_binding	0.93
PF00398	RrnaAD	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.93
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.93
COG2043	Uncharacterized conserved protein, DUF169 family	Function unknown [S]	0.93
COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	Replication, recombination and repair [L]	0.93
COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	Defense mechanisms [V]	0.93
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.83 %
Unclassified	root	N/A	26.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.83 %
Unclassified	root	N/A	26.17 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	71.03 %
Unclassified	root	N/A	26.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	43.93 %
Unclassified	root	N/A	26.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	41.12 %
Unclassified	root	N/A	26.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	41.12 %
Unclassified	root	N/A	26.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Methanotrichales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales	29.91 %
Unclassified	root	N/A	26.17 %
Methanosarcinales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	4.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Methanotrichaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae	29.91 %
Unclassified	root	N/A	26.17 %
Methanosarcinales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	4.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Methanothrix	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	29.91 %
Unclassified	root	N/A	26.17 %
Methanosarcinales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	4.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.17 %
unclassified Methanothrix	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix	22.43 %
Methanosarcinales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	4.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.80 %
Methanothrix soehngenii	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.17 %
Methanothrix sp.	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	22.43 %
Methanosarcinales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	4.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.80 %
Methanothrix soehngenii	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908039\|B3_v_NODE_99854_len_1033_cov_7_266215	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1083	Open in IMG/M
3300001213\|JGIcombinedJ13530_103108521	All Organisms → cellular organisms → Archaea	821	Open in IMG/M
3300002071\|JGIcombinedJ21915_10080128	Not Available	1350	Open in IMG/M
3300002961\|JGI11641J44799_10004869	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	4079	Open in IMG/M
3300002961\|JGI11641J44799_10035573	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1459	Open in IMG/M
3300002961\|JGI11641J44799_10059643	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1091	Open in IMG/M
3300003432\|JGI20214J51088_10016495	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	4973	Open in IMG/M
3300003432\|JGI20214J51088_10048211	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	2961	Open in IMG/M
3300003432\|JGI20214J51088_10140696	All Organisms → cellular organisms → Archaea	1708	Open in IMG/M
3300003432\|JGI20214J51088_10758083	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	626	Open in IMG/M
3300003535\|Ba1_1002162	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	848	Open in IMG/M
3300003664\|OilBA1_1002503	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	619	Open in IMG/M
3300004066\|Ga0055484_10019738	All Organisms → cellular organisms → Archaea → Euryarchaeota	1274	Open in IMG/M
3300004079\|Ga0055514_10033860	All Organisms → cellular organisms → Archaea	1019	Open in IMG/M
3300004693\|Ga0065167_1079030	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	564	Open in IMG/M
3300004775\|Ga0007798_10014394	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1802	Open in IMG/M
3300005323\|Ga0074198_1016130	All Organisms → cellular organisms → Archaea	1887	Open in IMG/M
3300006386\|Ga0079068_1274415	Not Available	579	Open in IMG/M
3300006651\|Ga0101725_124774	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	574	Open in IMG/M
3300006653\|Ga0101727_117591	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	708	Open in IMG/M
3300006655\|Ga0101731_113585	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300006665\|Ga0101753_113723	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	694	Open in IMG/M
3300006666\|Ga0101757_113182	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	696	Open in IMG/M
3300006669\|Ga0101735_111952	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1011	Open in IMG/M
3300006825\|Ga0101939_135331	Not Available	536	Open in IMG/M
3300006833\|Ga0101940_135365	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	588	Open in IMG/M
3300006838\|Ga0101938_1010711	Not Available	1708	Open in IMG/M
3300006882\|Ga0102489_110925	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	800	Open in IMG/M
3300006883\|Ga0102488_111811	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	698	Open in IMG/M
3300006888\|Ga0102492_122291	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	759	Open in IMG/M
3300006930\|Ga0079303_10031830	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1778	Open in IMG/M
3300009179\|Ga0115028_12084312	All Organisms → cellular organisms → Archaea	503	Open in IMG/M
3300009299\|Ga0115982_1075887	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	525	Open in IMG/M
3300009566\|Ga0130025_1156065	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	18707	Open in IMG/M
3300009674\|Ga0116173_1042159	All Organisms → cellular organisms → Archaea	2603	Open in IMG/M
3300009692\|Ga0116171_10394584	All Organisms → cellular organisms → Archaea	737	Open in IMG/M
3300010352\|Ga0116247_10202601	All Organisms → cellular organisms → Archaea	1645	Open in IMG/M
3300010352\|Ga0116247_11291284	All Organisms → cellular organisms → Archaea	520	Open in IMG/M
3300010353\|Ga0116236_10009797	Not Available	12893	Open in IMG/M
3300012931\|Ga0153915_12771162	All Organisms → cellular organisms → Archaea	573	Open in IMG/M
3300014204\|Ga0172381_10283004	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300014208\|Ga0172379_10520030	Not Available	749	Open in IMG/M
3300014490\|Ga0182010_10303129	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	858	Open in IMG/M
3300014494\|Ga0182017_10028298	All Organisms → cellular organisms → Archaea → Euryarchaeota	3827	Open in IMG/M
3300014494\|Ga0182017_10195390	Not Available	1294	Open in IMG/M
3300014498\|Ga0182019_10518889	Not Available	828	Open in IMG/M
3300014502\|Ga0182021_10266633	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	2010	Open in IMG/M
3300014502\|Ga0182021_10772328	All Organisms → cellular organisms → Archaea → Euryarchaeota	1153	Open in IMG/M
3300014502\|Ga0182021_12032444	Not Available	692	Open in IMG/M
3300018029\|Ga0187787_10340297	All Organisms → cellular organisms → Archaea	575	Open in IMG/M
3300018032\|Ga0187788_10352103	All Organisms → cellular organisms → Archaea	609	Open in IMG/M
3300018068\|Ga0184636_1195447	All Organisms → cellular organisms → Archaea	716	Open in IMG/M
3300018070\|Ga0184631_10131437	All Organisms → cellular organisms → Archaea	998	Open in IMG/M
3300018070\|Ga0184631_10348563	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	614	Open in IMG/M
3300018089\|Ga0187774_10130953	Not Available	1286	Open in IMG/M
3300019247\|Ga0179937_1317727	Not Available	520	Open in IMG/M
3300019861\|Ga0206388_1063139	Not Available	2744	Open in IMG/M
3300019861\|Ga0206388_1096878	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	5903	Open in IMG/M
3300022556\|Ga0212121_10034414	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	4429	Open in IMG/M
3300025145\|Ga0209609_10265419	All Organisms → cellular organisms → Archaea	541	Open in IMG/M
3300025447\|Ga0208102_1010681	Not Available	1684	Open in IMG/M
3300025533\|Ga0208584_1002113	Not Available	4723	Open in IMG/M
3300025855\|Ga0209717_1237996	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	668	Open in IMG/M
3300025858\|Ga0209099_1000285	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	60683	Open in IMG/M
3300025858\|Ga0209099_1043895	Not Available	2245	Open in IMG/M
3300025858\|Ga0209099_1077999	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1512	Open in IMG/M
3300025888\|Ga0209540_10239412	Not Available	1058	Open in IMG/M
3300025975\|Ga0210091_1013935	Not Available	773	Open in IMG/M
3300027419\|Ga0209340_1019651	All Organisms → cellular organisms → Archaea	2037	Open in IMG/M
3300027887\|Ga0208980_10013725	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	4732	Open in IMG/M
3300027887\|Ga0208980_10090470	All Organisms → cellular organisms → Archaea	1793	Open in IMG/M
3300027890\|Ga0209496_10139916	All Organisms → cellular organisms → Archaea	1092	Open in IMG/M
3300027896\|Ga0209777_10449311	Not Available	960	Open in IMG/M
3300028916\|Ga0310376_1002834	Not Available	13074	Open in IMG/M
3300028923\|Ga0310375_1000699	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	19505	Open in IMG/M
3300029288\|Ga0265297_10403884	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	916	Open in IMG/M
3300029288\|Ga0265297_10514257	Not Available	779	Open in IMG/M
3300029288\|Ga0265297_10544281	All Organisms → cellular organisms → Archaea	750	Open in IMG/M
3300029959\|Ga0272380_10312501	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1094	Open in IMG/M
3300030000\|Ga0311337_10794068	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	821	Open in IMG/M
3300031232\|Ga0302323_100252493	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1808	Open in IMG/M
3300031539\|Ga0307380_10005089	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	17526	Open in IMG/M
3300031566\|Ga0307378_10879796	Not Available	744	Open in IMG/M
3300031578\|Ga0307376_10353309	Not Available	974	Open in IMG/M
3300031578\|Ga0307376_10836022	Not Available	566	Open in IMG/M
3300031673\|Ga0307377_10474440	All Organisms → cellular organisms → Archaea	916	Open in IMG/M
3300031746\|Ga0315293_10024803	All Organisms → cellular organisms → Archaea	5329	Open in IMG/M
3300031759\|Ga0316219_1225528	All Organisms → cellular organisms → Archaea	664	Open in IMG/M
3300031834\|Ga0315290_10448068	All Organisms → cellular organisms → Archaea	1130	Open in IMG/M
3300031862\|Ga0315280_10019755	All Organisms → cellular organisms → Archaea	7304	Open in IMG/M
3300031862\|Ga0315280_10023383	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	6449	Open in IMG/M
3300031952\|Ga0315294_10147031	All Organisms → cellular organisms → Archaea	2394	Open in IMG/M
3300031997\|Ga0315278_10573734	All Organisms → cellular organisms → Archaea	1156	Open in IMG/M
3300032069\|Ga0315282_10035115	Not Available	6108	Open in IMG/M
3300032070\|Ga0315279_10031942	All Organisms → cellular organisms → Bacteria	5319	Open in IMG/M
3300032156\|Ga0315295_11806984	Not Available	580	Open in IMG/M
3300032163\|Ga0315281_10305340	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1737	Open in IMG/M
3300032397\|Ga0315287_11097686	All Organisms → cellular organisms → Archaea	921	Open in IMG/M
3300032516\|Ga0315273_12951395	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	534	Open in IMG/M
3300033414\|Ga0316619_12001224	All Organisms → cellular organisms → Archaea	528	Open in IMG/M
3300033418\|Ga0316625_100663079	Not Available	866	Open in IMG/M
3300033483\|Ga0316629_10250319	Not Available	1163	Open in IMG/M
3300033483\|Ga0316629_11520356	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	546	Open in IMG/M
3300033557\|Ga0316617_100303073	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1353	Open in IMG/M
3300034195\|Ga0370501_0007729	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	2865	Open in IMG/M
3300034281\|Ga0370481_0001477	All Organisms → cellular organisms → Archaea	6179	Open in IMG/M
3300034281\|Ga0370481_0024693	Not Available	1787	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.44%
Engineered	Engineered	20.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	42.99%
Aquatic	Environmental → Aquatic	36.45%
Wastewater	Engineered → Wastewater	10.28%
Solid Waste	Engineered → Solid Waste	3.74%
Lab Enrichment	Engineered → Lab Enrichment	3.74%
Bioremediation	Engineered → Bioremediation	2.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.38%
Freshwater	Environmental → Aquatic → Freshwater	21.50%
Marine	Environmental → Aquatic → Marine	12.15%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	10.28%
Landfill	Engineered → Solid Waste → Landfill	3.74%
Defined Media	Engineered → Lab Enrichment → Defined Media	3.74%
Sediment	Environmental → Aquatic → Sediment	2.80%
Tetrachloroethylene And Derivatives	Engineered → Bioremediation → Tetrachloroethylene And Derivatives	2.80%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.87%
Peat	Environmental → Terrestrial → Peat	1.87%
Unclassified	Environmental → Terrestrial → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	15.89%
Lake	Environmental → Aquatic → Freshwater → Lake	13.08%
Wetlands	Environmental → Aquatic → Marine → Wetlands	12.15%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	10.28%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.67%
Clay	Environmental → Terrestrial → Soil → Clay	4.67%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified	2.80%
Tetrachloroethylene	Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene	2.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Unclassified → Unclassified	1.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.93%
Aquifer	Environmental → Terrestrial → Deep Subsurface → Aquifer	0.93%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	0.93%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	11.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.21%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.28%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	10.28%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	9.35%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.54%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	4.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.74%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified	2.80%
Unclassified	Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Unclassified → Unclassified → Unclassified	1.87%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified	0.93%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	11.21%
Sediment	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment	11.21%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	10.28%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	9.35%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	6.54%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	4.67%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	3.74%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.80%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.80%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.80%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Anaerobic Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Anaerobic Enrichment Culture	2.80%
Bioremediated Contaminated Groundwater	Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater	2.80%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.87%
Anoxic Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water	1.87%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.87%
Petroleum Reservoir	Environmental → Terrestrial → Unclassified → Unclassified → Unclassified → Petroleum Reservoir	1.87%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.93%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.93%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.93%
Sediment	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Sediment	0.93%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.93%
Aquifer Solids	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Aquifer Solids	0.93%
Anaerobic Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Anaerobic Enrichment Culture	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908039	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002071	Barrow Graham LP Ref core NGADG0011-312 (Barrow Graham LP Ref core NGADG0011-312,NGADG0011-212, ASSEMBLY_DATE=20131010)	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003535	Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA- 1	Environmental	Open in IMG/M
3300003664	Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA- 1	Environmental	Open in IMG/M
3300004066	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2	Environmental	Open in IMG/M
3300004079	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D2	Environmental	Open in IMG/M
3300004693	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)	Environmental	Open in IMG/M
3300004775	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M	Environmental	Open in IMG/M
3300005323	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23	Engineered	Open in IMG/M
3300006386	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Oil_01_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006651	T8 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006653	Combined Assembly of Gp0123708, Gp0123962, Gp0123963	Environmental	Open in IMG/M
3300006655	T8 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006665	T8 (3) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006666	T14 (2) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006669	T14 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006825	Combined Assembly of Gp0125114, Gp0125115, Gp0125116	Environmental	Open in IMG/M
3300006833	Combined Assembly of Gp0125117, Gp0125118, Gp0125119	Environmental	Open in IMG/M
3300006838	Combined Assembly of Gp0125106, Gp0125107, Gp0125108	Environmental	Open in IMG/M
3300006882	T10 (2) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006883	T10 (1) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006888	Combined Assembly of Gp0125122, Gp0125123, Gp0125658	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009299	T14 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2)	Environmental	Open in IMG/M
3300009566	Methanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB	Environmental	Open in IMG/M
3300009674	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG	Engineered	Open in IMG/M
3300009692	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG	Engineered	Open in IMG/M
3300010352	AD_JPHWca	Engineered	Open in IMG/M
3300010353	AD_USCAca	Engineered	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014204	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG	Engineered	Open in IMG/M
3300014208	Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Groundwater well OW334 metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300019247	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC028_MetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300019861	Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG1A 1	Engineered	Open in IMG/M
3300022556	Kivu_combined assembly	Environmental	Open in IMG/M
3300025145	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG (SPAdes)	Environmental	Open in IMG/M
3300025447	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M (SPAdes)	Environmental	Open in IMG/M
3300025533	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025855	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025858	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300025975	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300027419	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23 (SPAdes)	Engineered	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300028916	Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA. Combined Assembly of Gp0220779, Gp0324998	Engineered	Open in IMG/M
3300028923	Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG0 msp	Engineered	Open in IMG/M
3300029288	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91	Engineered	Open in IMG/M
3300029959	EPA Superfund site combined assembly	Engineered	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031673	Soil microbial communities from Risofladan, Vaasa, Finland - TR-3	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031759	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032070	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M
3300034281	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B3_v_01044960	2124908039	Soil	VAAKMTPEEGGSILRETVREMGRMTNKILILGIILILAILAVLMY
JGIcombinedJ13530_1031085212	3300001213	Wetland	VIPEEEGSDVREMVWEMSRMTNKILILGIMLVLAILAVLIYSGILTFPHR*
JGIcombinedJ21915_100801283	3300002071	Arctic Peat Soil	MTPEEEGSDVRETVWEMSRMTNKILILGIILILAILAALKYFGIVKFPSLAN*
JGI11641J44799_100048693	3300002961	Wetland	MTPEEQSREVREMVWEMSRTTSKILIFGIIIILAILAILMYYGILSPWKV*
JGI11641J44799_100355732	3300002961	Wetland	MTPEEERSEVREMIWEMSRTTNKILIFGIVLIIAILAVLMYFGILSPW*
JGI11641J44799_100596432	3300002961	Wetland	MTTEEESSEVREMIWEMSRTTNKILIFGIVLILAILAVLMYFGILSPWQVWERWQGKGK*
JGI20214J51088_100164952	3300003432	Wetland	MTPEEKNDVQEMVWEMSRMTNKILISGIFLILAILAVLIYLGII*
JGI20214J51088_100482112	3300003432	Wetland	MTPEEESSEVREMIWEMSRTTNKILIFGIILIIAILAVLMYFGILSPW*
JGI20214J51088_101406962	3300003432	Wetland	MPPKMTPEEESSDVREMVWEMSRTTNRILIFGIIFILAILAVLMYCGIIAFPSLVNLGAP
JGI20214J51088_107580832	3300003432	Wetland	VIPEEEKSDVRETVREMSRTANKILILGTILILAILALLIYVGVLAFPHR*
Ba1_10021622	3300003535	Petroleum Reservoir	MTPEEGNDVREMVWEMSRTTNKILIFGIILILAILAVLIYLGILSFPSLAN*
OilBA1_10025032	3300003664	Petroleum Reservoir	MTPEEGNDVREMVWEMSRTTNKILIFGIILILAILAVLIY
Ga0055484_100197382	3300004066	Natural And Restored Wetlands	MIPEEEGSDVREMVWEMSRMTNKILIFGLILILAILAALIYLGIITFPHQ*
Ga0055514_100338601	3300004079	Natural And Restored Wetlands	MTPEEEESGEVREMIWEMSRTTNKILIFGIILIIAILAVLMYFGILSPW*
Ga0065167_10790301	3300004693	Freshwater	MTPEEEGSDVREMVWEMSRMTNKILIFGIILILAILAALIY
Ga0007798_100143943	3300004775	Freshwater	MTPEEEGSDVREMVWEMSRMTNKILIFGIILILAILAALIYLGILTFPFLANLVLCSS*
Ga0074198_10161302	3300005323	Bioremediated Contaminated Groundwater	VIPEEEGSDAREMVWEMSRMTNKILIFGIMLVLAILAVLIYSGILTPR*
Ga0079068_12744151	3300006386	Anaerobic Digestor Sludge	MTPEYRSDIREIVWEMSRTTNKILISGIILVLVILALLIYYGMITIPL*
Ga0101725_1247741	3300006651	Sediment	VTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGI
Ga0101727_1175911	3300006653	Sediment	VTPEKEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGVITFPSLPNLVICS
Ga0101731_1135852	3300006655	Sediment	VTPEEESSDVREMVWEMSRMTNKILIFGIILVLAILAVLIYLGILTFPYQ*
Ga0101753_1137232	3300006665	Sediment	VTTEKEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGVITFPSLPNLVICSS*
Ga0101757_1131822	3300006666	Sediment	MTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAALIYLGILTFS*
Ga0101735_1119521	3300006669	Sediment	VTPEEESSDVREMVWEMSRMTNKILIFGIILVLAILAVLIYLGILTF
Ga0101939_1353311	3300006825	Sediment	MTPEEEGSDVREMVWEMSRTTNKILFFGIILILAILAVLMYCGIIAFPSLAVLPLAKSGA
Ga0101940_1353652	3300006833	Sediment	VTPEEESSDVREMVWEMSRMTNKILIFGIILVLAILAVLIYLGIL
Ga0101938_10107111	3300006838	Sediment	MTPEEEGSDVREMVWEMSRTTNKILILGIILILAILAVLMYCGIIAFPSLAVLPLAKSGAL*
Ga0102489_1109252	3300006882	Sediment	VTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAALIYLGILTFS*
Ga0102488_1118111	3300006883	Sediment	VTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGIITFPSLTNGLINITK
Ga0102492_1222912	3300006888	Sediment	MTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLM
Ga0079303_100318302	3300006930	Deep Subsurface	MTPEEQSSEVREMVWEMSRTTSKILIFGIIIILAILAILMYYGILSPWQI*
Ga0115028_120843122	3300009179	Wetland	VAAKMTPEEEGSDVREMVWEMSRTTNRILIFGIILILAILAALIYLGIITFPHQ*
Ga0115982_10758872	3300009299	Sediment	VTPEKEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGVITFPSLPNLV
Ga0130025_115606521	3300009566	Aquifer Solids	VIPEEEKSDVRETVREMSRTANKIMILGTILILAILALLIYAGILAFPHR*
Ga0116173_10421593	3300009674	Anaerobic Digestor Sludge	VIPEEEGSDVREMVWEMSRTTNKILILGIILILAILAVLMYGGIRS*
Ga0116171_103945843	3300009692	Anaerobic Digestor Sludge	VTPEEESREVREMVWEMSQMTNRILIFGIILILAILAVLIYCGFITFPFLANLVLSSS*
Ga0116247_102026011	3300010352	Anaerobic Digestor Sludge	MTPDEESRGIREMVSEMSRMTNRILIFGIVLILAILAVLIYCGISLAN*
Ga0116247_112912841	3300010352	Anaerobic Digestor Sludge	MTPEEESSDVREMVREMSRITNRILIFGLVLILAILAVLMYLGIIAFPSLERPGTL*
Ga0116236_1000979714	3300010353	Anaerobic Digestor Sludge	LPVSPTVGDAKMTPEDRSEIREMVWEMSRTTNKILISGIILVLVILALLVHYGMITIPL*
Ga0153915_127711621	3300012931	Freshwater Wetlands	PFLWRCCRMTPEEEGNEIREMVWEISRVTNRILILAIILVLAILAMLRHYGVRS*
Ga0172381_102830041	3300014204	Landfill Leachate	MKLVAAKMTPEEESNDVREMVWEMSRTTNKILIFGLVLILAIMAVLMYCGIITFPFLANLVLCSS*
Ga0172379_105200303	3300014208	Groundwater	MTHEEESSDVREMFWEMSRMTNKILIFGIILILAILATLMNCGIITFS*
Ga0182010_103031292	3300014490	Fen	VTPEEEGSDVREMVLEMSRMTNRILIFGIILILAILAVLIYCGIITFPSLND*
Ga0182017_100282981	3300014494	Fen	VTPEEEGSDVREMVWEMSRMTNRILIFGIILILAILAVLIYCGIITFPSLND*
Ga0182017_101953904	3300014494	Fen	VAAKMTPEELGSDLRETVWEMSRMTNKILILGIILILAILAVLKYIGIV*
Ga0182019_105188892	3300014498	Fen	VAAKLTPEEDGIDLRDTVREMSRMTNKILIWGIILILAILAVLMY*
Ga0182021_102666333	3300014502	Fen	MESYWWLQKMTPEELGSDLRETVREMSRMTNKILILGIILILAILAALMYFGIVKFPSLAGLRNP*
Ga0182021_107723282	3300014502	Fen	VTPEEEGSDVREIVWEMSRMTNWILIFGIILILAILAALMYWGIIAFPHQ*
Ga0182021_120324442	3300014502	Fen	VAAKMTPEELGSDLRETVWEMSRMTNKILILGIILILAILATLKYFGIVKFP*
Ga0187787_103402972	3300018029	Tropical Peatland	MTPEEEGDEVREMIWEMSRVTNKILILAIILILAILAIIRYYGI
Ga0187788_103521032	3300018032	Tropical Peatland	MTPEEEGDEVREMIWEMSRVTNKILILAIILILAILAVLRYYGIRSWI
Ga0184636_11954472	3300018068	Groundwater Sediment	VIPEEECSDVREMVWEMSRMTNRILIFGIILVLAILAALIYCGILTFPSSVI
Ga0184631_101314371	3300018070	Groundwater Sediment	VIPEEECSDVREMVWEMSQTTNKILIFGIVLILAILAALIYCGILTFPSSVI
Ga0184631_103485632	3300018070	Groundwater Sediment	MTPEEEGSDVREMVWEMSRMTNKILIFGLVLILAILAA
Ga0187774_101309531	3300018089	Tropical Peatland	MTPEEEGDEVREMVWEMSRVTNKILILAIILVLAILAVLRYYGIRSWI
Ga0179937_13177272	3300019247	Anaerobic Digestor Sludge	MTPEYRSDIREIVWEMSRTTNKILISGIILVLVILALLIYYGMITIPL
Ga0206388_10631391	3300019861	Anaerobic Enrichment Culture	SVIPEEESSDVREMVWEMSRTTNKILIIGIVLVLAILAALIYLGIITFS
Ga0206388_10968783	3300019861	Anaerobic Enrichment Culture	MPGGESVIPEEESSDVREMVWEMSRMTNRILIFGIILIFAILAALIYLGILSLTI
Ga0212121_100344144	3300022556	Anoxic Lake Water	MTPDEDGNEIREMIWEMSRVTNKILILGILLILAILAVLQYRTLTN
Ga0209609_102654192	3300025145	Anoxic Lake Water	MTPEESSDVREMVWEMSRMTSKILILGIILILAILAVLMHYGI
Ga0208102_10106812	3300025447	Freshwater	MTPEEEGSDVREMVWEMSRMTNKILIFGIILILAILAALIYLGILTFPFLANLVLCSS
Ga0208584_10021139	3300025533	Arctic Peat Soil	MTPEEEGSDVRETVWEMSRMTNKILILGIILILAILAALKYFGIVKFPSLAN
Ga0209717_12379962	3300025855	Anaerobic Digestor Sludge	VSPTVGNAKMTPEYRSDIREIVWEMSRTTNKILISGIILVLVILALLIYYGMITIPL
Ga0209099_100028520	3300025858	Anaerobic Digestor Sludge	MTPEEESSDVREMVWEMSRMTNKILIFGLVLILAILAVLMHLGIVAFPALVRSGAL
Ga0209099_10438953	3300025858	Anaerobic Digestor Sludge	VTPEEESREVREMVWEMSQMTNRILIFGIILILAILAVLIYCGFITFPFLANLVLSSS
Ga0209099_10779993	3300025858	Anaerobic Digestor Sludge	MPEEESSDVREMVWEMSRMTNRILIFGIILILLILAALMYLGVLAFPFLSN
Ga0209540_102394121	3300025888	Arctic Peat Soil	MTPEEEGSILREMVREMSRMTNKILILGIILILAILAGLM
Ga0210091_10139352	3300025975	Natural And Restored Wetlands	MTPEEESSEVREMIWEMSRTTNKILIFGIILIIAILAVLMYFGILSPW
Ga0209340_10196513	3300027419	Bioremediated Contaminated Groundwater	VIPEEEGSDAREMVWEMSRMTNKILIFGIMLVLAILAVLIYSGILTPR
Ga0208980_100137253	3300027887	Wetland	MTPEEQSREVREMVWEMSRTTSKILIFGIIIILAILAILMYYGILSPWKV
Ga0208980_100904704	3300027887	Wetland	LYGMTPEEESSEVREMIWEIGRTTNKILIFGIVLIIAILAVLMYFGILSPW
Ga0209496_101399162	3300027890	Wetland	MLKMTPEDRSDILEMVWEMSRTTNKILISGIILILVILAILIYYGMVTIPL
Ga0209777_104493111	3300027896	Freshwater Lake Sediment	KMTPEEEGSDLRETVWEMSRMTNKILILGIILILAILAVFKYCGIVKFPSLAN
Ga0310376_10028342	3300028916	Anaerobic Enrichment Culture	VTPEEESSDVREMVWEMSRTTNKILIIGIVLVLAILAALIYLGIITFS
Ga0310375_100069916	3300028923	Anaerobic Enrichment Culture	MTPEEESSDVREMVWEMSRMTNKILIFAVALILGILAALIYCGIISSPH
Ga0265297_104038842	3300029288	Landfill Leachate	VTPEEESSDVREMVWEMSRMTNKILIVGIVLILAILAALIYIGILTFS
Ga0265297_105142571	3300029288	Landfill Leachate	MTPEEERSDVREMVWEMSRMTNRILIFAVVLILGILAALIYCGIIS
Ga0265297_105442811	3300029288	Landfill Leachate	VTPEEESSDLKEMVWEMSRMTNKILIFGLALILAILAALIYLGILTFPFLANLVLCSS
Ga0272380_103125012	3300029959	Bioremediated Contaminated Groundwater	VTPEEESNGVREMVWEMSRMTNKILIVGLALILAI
Ga0311337_107940681	3300030000	Fen	MESYWWLQKMTPEELGSDLRETVREMSRMTNKILILGIILILAILAALMYFGIVKFPSLA
Ga0302323_1002524931	3300031232	Fen	MESYWWLQKMTPEELGSDLRETVREMSRMTNKILIWGIILILAILAVLMY
Ga0307380_1000508916	3300031539	Soil	VTPEKEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGVITFPSLPNLVICSS
Ga0307378_108797963	3300031566	Soil	MTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGIITFP
Ga0307376_103533092	3300031578	Soil	MTPEEEGSDVREMVWEMSRTTNKILILGIILILAILAVLMYCGIIAFPSLAVLPLAKSGA
Ga0307376_108360221	3300031578	Soil	MTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAV
Ga0307377_104744401	3300031673	Soil	MTPEEEGSDVREMVWEMSRTTNKILILGIILILAILAVLMYCGIIAFPSLAVL
Ga0315293_100248032	3300031746	Sediment	MTPDENGNEIREMIWEMSRVTNKILILGILLILAILAVLKYRSILTN
Ga0316219_12255282	3300031759	Freshwater	MTPEEEGSDIREMVWEMSRMTNKILIIGIILILAILAVLKYGGTITLPSLND
Ga0315290_104480682	3300031834	Sediment	MTPEEESSEVREIIWDMSRTTNKILIFGIIVILAILAILMYYDILSPWQL
Ga0315280_100197556	3300031862	Sediment	MTPEEGSDVREMVWEMSRTTNKILILGIILILAILAVLMYCGVLTFPHR
Ga0315280_100233833	3300031862	Sediment	MTPDENGNEIREMIWEMSRVTNKILILGILLILVILAVLKYRSILTN
Ga0315294_101470312	3300031952	Sediment	VIPEEEGSDVREMVWEMSRMTNKILILGTILILAILAVLMYCGVLTFPHR
Ga0315278_105737342	3300031997	Sediment	MTPEEESSEVRELIWEMSRTTNKILIFGIVLIIAILAVLMYFGILSPW
Ga0315282_100351152	3300032069	Sediment	MISEEEGSDVREMVWEMSRTTNKILILGIILILAILGVLMYYGILRLSS
Ga0315279_100319427	3300032070	Sediment	MTPEEGSDIREMVWEMSRMTNKILILGIILILAILGVLLYYGIIRLSR
Ga0315295_118069841	3300032156	Sediment	MTPEESSEVREMVWEMSRMTNKILILGIILILAILAVLMYCGIIRLSR
Ga0315281_103053404	3300032163	Sediment	VVPEEEGSDVREMVWEMSRTTNKILILGIILILAILAVLMYCGIITFLFLANWVLCRS
Ga0315287_110976862	3300032397	Sediment	SEVRELIWEMSRTTNKILIFGIVLIIAILAVLMYFGILSPW
Ga0315273_129513952	3300032516	Sediment	MTPEEDGSDVREMVWEMSRTTNKILILGIILIFVILAVLMYCGILTFS
Ga0316619_120012241	3300033414	Soil	PVSIIRRLYRMTPEEQSSEVREMVWEMNRTTSKILIFGIIVILAILAILMYYSILSPWQV
Ga0316625_1006630792	3300033418	Soil	MTPEEQSSEVREMVWEMSRTTSKILIFGIIIILAILAILMYYGILSPWQI
Ga0316629_102503192	3300033483	Soil	MTPEEQSSEVREMVWEMSKTTSKILIFGIIVVLAILAILMYYGILSPWQV
Ga0316629_115203561	3300033483	Soil	MTPEEEGSDVREMVWEMSRTTNRILIFGIILILAILAALIYLGITT
Ga0316617_1003030732	3300033557	Soil	MTPEEQSSEVREMVWEMSKTTSKILIFGIIVVLAILAILMYYGILSPWQI
Ga0370501_0007729_1374_1511	3300034195	Untreated Peat Soil	VAAKMTPEEEGSDLREAVREMSRMTNKILILGIILILAILAVLMY
Ga0370481_0001477_24_194	3300034281	Untreated Peat Soil	VAAKMTPEELGSDLRETVWEMSRMTNKILILGIILILAILAALMYFGIVKFPSLAS
Ga0370481_0024693_1557_1706	3300034281	Untreated Peat Soil	VAAKMTPEELGSDLRETVREMSRMTNKILILGIILILAILAALNYFGIV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092111

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences