Sample 3300025975

Overview

Basic Information
IMG/M Taxon OID	3300025975 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101394 \| Ga0210091
Sample Name	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	64446846
Sequencing Scaffolds	32
Novel Protein Genes	34
Associated Families	33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	1
Not Available	13
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-3	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → Candidatus Cloacimonas → unclassified Candidatus Cloacimonas → Candidatus Cloacimonas sp. SDB	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.107536	Long. (^o)	-121.649704	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013428	Metagenome / Metatranscriptome	271	Y
F016481	Metagenome / Metatranscriptome	247	Y
F018131	Metagenome	236	Y
F020980	Metagenome / Metatranscriptome	221	Y
F027427	Metagenome / Metatranscriptome	194	Y
F034003	Metagenome	176	Y
F035352	Metagenome / Metatranscriptome	172	Y
F036300	Metagenome	170	Y
F042655	Metagenome	158	Y
F049732	Metagenome / Metatranscriptome	146	Y
F049734	Metagenome	146	Y
F052016	Metagenome / Metatranscriptome	143	N
F053087	Metagenome	141	Y
F054975	Metagenome / Metatranscriptome	139	N
F060094	Metagenome	133	Y
F060095	Metagenome	133	Y
F061489	Metagenome	131	N
F063812	Metagenome	129	N
F064689	Metagenome	128	Y
F065905	Metagenome	127	Y
F067458	Metagenome	125	Y
F071379	Metagenome	122	Y
F075042	Metagenome / Metatranscriptome	119	Y
F077451	Metagenome / Metatranscriptome	117	Y
F087389	Metagenome / Metatranscriptome	110	Y
F089951	Metagenome	108	Y
F089952	Metagenome / Metatranscriptome	108	Y
F092111	Metagenome / Metatranscriptome	107	Y
F093372	Metagenome	106	Y
F097610	Metagenome	104	N
F098566	Metagenome	103	Y
F101438	Metagenome / Metatranscriptome	102	N
F105432	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F013428

Metagenome / Metatranscriptome

271

F016481

Metagenome / Metatranscriptome

247

F018131

Metagenome

236

F020980

Metagenome / Metatranscriptome

221

F027427

Metagenome / Metatranscriptome

194

F034003

Metagenome

176

F035352

Metagenome / Metatranscriptome

172

F036300

Metagenome

170

F042655

Metagenome

158

F049732

Metagenome / Metatranscriptome

146

F049734

Metagenome

146

F052016

Metagenome / Metatranscriptome

143

F053087

Metagenome

141

F054975

Metagenome / Metatranscriptome

139

F060094

Metagenome

133

F060095

Metagenome

133

F061489

Metagenome

131

F063812

Metagenome

129

F064689

Metagenome

128

F065905

Metagenome

127

F067458

Metagenome

125

F071379

Metagenome

122

F075042

Metagenome / Metatranscriptome

119

F077451

Metagenome / Metatranscriptome

117

F087389

Metagenome / Metatranscriptome

110

F089951

Metagenome

108

F089952

Metagenome / Metatranscriptome

108

F092111

Metagenome / Metatranscriptome

107

F093372

Metagenome

106

F097610

Metagenome

104

F098566

Metagenome

103

F101438

Metagenome / Metatranscriptome

102

F105432

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210091_1000005	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	25633	Open in IMG/M
Ga0210091_1000069	Not Available	8273	Open in IMG/M
Ga0210091_1000083	All Organisms → cellular organisms → Bacteria → Proteobacteria	7532	Open in IMG/M
Ga0210091_1000213	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	4926	Open in IMG/M
Ga0210091_1000221	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	4851	Open in IMG/M
Ga0210091_1000554	All Organisms → cellular organisms → Bacteria → Proteobacteria	3258	Open in IMG/M
Ga0210091_1001245	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-3	2293	Open in IMG/M
Ga0210091_1001424	Not Available	2127	Open in IMG/M
Ga0210091_1001511	All Organisms → cellular organisms → Archaea → Euryarchaeota	2064	Open in IMG/M
Ga0210091_1001578	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2029	Open in IMG/M
Ga0210091_1001766	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
Ga0210091_1002417	Not Available	1667	Open in IMG/M
Ga0210091_1002587	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1619	Open in IMG/M
Ga0210091_1003139	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → Candidatus Cloacimonas → unclassified Candidatus Cloacimonas → Candidatus Cloacimonas sp. SDB	1484	Open in IMG/M
Ga0210091_1004366	Not Available	1270	Open in IMG/M
Ga0210091_1004641	All Organisms → cellular organisms → Archaea	1239	Open in IMG/M
Ga0210091_1005336	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	1166	Open in IMG/M
Ga0210091_1005490	Not Available	1152	Open in IMG/M
Ga0210091_1005748	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1130	Open in IMG/M
Ga0210091_1009499	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	913	Open in IMG/M
Ga0210091_1009515	Not Available	912	Open in IMG/M
Ga0210091_1011201	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
Ga0210091_1012276	Not Available	817	Open in IMG/M
Ga0210091_1013574	Not Available	782	Open in IMG/M
Ga0210091_1013935	Not Available	773	Open in IMG/M
Ga0210091_1015566	Not Available	739	Open in IMG/M
Ga0210091_1017600	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	702	Open in IMG/M
Ga0210091_1020298	Not Available	662	Open in IMG/M
Ga0210091_1022254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	637	Open in IMG/M
Ga0210091_1028262	Not Available	577	Open in IMG/M
Ga0210091_1032777	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231	542	Open in IMG/M
Ga0210091_1034255	Not Available	532	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0210091_1000005

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica

25633

Open in IMG/M

Ga0210091_1000069

Not Available

8273

Open in IMG/M

Ga0210091_1000083

All Organisms → cellular organisms → Bacteria → Proteobacteria

7532

Open in IMG/M

Ga0210091_1000213

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales

4926

Open in IMG/M

Ga0210091_1000221

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia

4851

Open in IMG/M

Ga0210091_1000554

All Organisms → cellular organisms → Bacteria → Proteobacteria

3258

Open in IMG/M

Ga0210091_1001245

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-3

2293

Open in IMG/M

Ga0210091_1001424

Not Available

2127

Open in IMG/M

Ga0210091_1001511

All Organisms → cellular organisms → Archaea → Euryarchaeota

2064

Open in IMG/M

Ga0210091_1001578

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

2029

Open in IMG/M

Ga0210091_1001766

All Organisms → cellular organisms → Bacteria

1918

Open in IMG/M

Ga0210091_1002417

Not Available

1667

Open in IMG/M

Ga0210091_1002587

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1619

Open in IMG/M

Ga0210091_1003139

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → Candidatus Cloacimonas → unclassified Candidatus Cloacimonas → Candidatus Cloacimonas sp. SDB

1484

Open in IMG/M

Ga0210091_1004366

Not Available

1270

Open in IMG/M

Ga0210091_1004641

All Organisms → cellular organisms → Archaea

1239

Open in IMG/M

Ga0210091_1005336

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium

1166

Open in IMG/M

Ga0210091_1005490

Not Available

1152

Open in IMG/M

Ga0210091_1005748

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae

1130

Open in IMG/M

Ga0210091_1009499

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia

913

Open in IMG/M

Ga0210091_1009515

Not Available

912

Open in IMG/M

Ga0210091_1011201

All Organisms → cellular organisms → Bacteria

848

Open in IMG/M

Ga0210091_1012276

Not Available

817

Open in IMG/M

Ga0210091_1013574

Not Available

782

Open in IMG/M

Ga0210091_1013935

Not Available

773

Open in IMG/M

Ga0210091_1015566

Not Available

739

Open in IMG/M

Ga0210091_1017600

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

702

Open in IMG/M

Ga0210091_1020298

Not Available

662

Open in IMG/M

Ga0210091_1022254

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

637

Open in IMG/M

Ga0210091_1028262

Not Available

577

Open in IMG/M

Ga0210091_1032777

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231

542

Open in IMG/M

Ga0210091_1034255

Not Available

532

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0210091_1000005	Ga0210091_100000528	F067458	MKRFVFAGLIFLVLLQGIWIAAADDSPDYSKIVVVNLTINKSSITEKSVEMRYGHPPNIEARNGDFKGTLKTADGSTIREFNLWDPRYQLGDVLEKDNESSGYLSGYLTYSDNADLVLILPYYENQMTFELYDKKTGTLLKKVNMSQAITKFQSNYPKDPGSISVSPIQFDKSVLYVITGVVISILIIGMILSMVRKK
Ga0210091_1000069	Ga0210091_10000694	F075042	MSDTAAPPLWAVLGSLGNIILSVGMIWYLLLFLSSCSSCPARPFAFIFIIAFGVIIALSGFELFRLLFYERRKSCRVCSLVAKMVEIDGKVP
Ga0210091_1000083	Ga0210091_10000832	F071379	MSPVRSILFRSCLTVASALAGCGTPAPPKADMPSLEQRLLELERRVEGLEARPVIESPYRSKVEVQAHIKALEAERDALLVRYRDQHPDIRDINRRLGILNSQLQMMEQP
Ga0210091_1000213	Ga0210091_10002137	F065905	LVIVITTITVVFFQTAYRYFYQAFPWSVNAYHTVKYPASLAFIHPNSQSILMIVTGAVIILIILAYYPKETQSL
Ga0210091_1000221	Ga0210091_10002217	F063812	MSAKHHDSKKHEDAKPAPACHMCKEKYVYPEHPTPSGICHKCQTKIGVIILIIFVILGGIVFFGLI
Ga0210091_1000554	Ga0210091_10005542	F101438	MLRLMFSACLFVCSAASAWAGSPVDAPVSQATRFERLLDLRNNVSLVRYPQQALDLADAMSDPEFLVAAMMMSANPEIWLKAMERAGAPGVPQNLSQMATPEMLADWFYSSIDPQFQQAILTRMLDPKKPQRWMQAMSNPRFYMHALAIMNPSTPMQWMTVTADGRMIQPMQAWFDPKTYLNWMRLPMPASSDTQKSGDKPPMTTYAWKPPLRY
Ga0210091_1001206	Ga0210091_10012063	F093372	MKIIELFALFIVIGLILAGGCVAMTNKNTENITTAATFSPRSDVSDHGLNTTANVTDNSTSKLKGSLRVSIGGILYPANLSVVLDNETVGTVTPSTPLYLMVPEGNHTVIVCVSPVCEQEQVTTRFGRYVSVDFSEQLLKDVKFPNPNAEPTARILDCYKNGDEISVNVEFFNPSPKDLRMSVIISVGYSYIDDRTNIKMGDSAKGVLVQDVRAGQRITKPLTLSFASGHSFTYNSPVIEELKIK
Ga0210091_1001245	Ga0210091_10012451	F036300	MDDMVAQGFGAIVIIYGGLIVIALGVVVFITKFWSALVSGDTGFILLWCTIILVLVSLYAGCGLLLRKYGIT
Ga0210091_1001424	Ga0210091_10014241	F042655	VLDLKTFEITIPQQYLDHINREIKKPKRPNTELLELWLERELSIENEGSYGNLPTDESHVTVEVLPNGNYKVVISDVVFGMIKSHVQPEPHSHKIQNEDLFHCWLDLRTNKVYLEEHIKVKETA
Ga0210091_1001511	Ga0210091_10015113	F054975	MTKQLFSIFDNKKKFFLISEDELKKFQHYVFDGLSVFDHLDAKNLFYDVGSRQAQNDVRSWQLVCKYCPINLRCEVLIEDTSKCAIFNKLTVRNYTLHAMEEIQFQRQRLHEILDGMKNGGTCDNNCELCILCDNAGHCVAEKAMRLLRESKIEDPSGTVCVA
Ga0210091_1001578	Ga0210091_10015781	F027427	MGRRNLFASRLNGSRAAQIVIESPGRQRPTTETTDAAGEEVLETPGALSKPGCLLRRPMRTAD
Ga0210091_1001766	Ga0210091_10017662	F049732	MDVLRILLNIFLFTASLFAAALFVEKIYAGRWKWVAFGILMSFIIGFVLFPATLIAVLEALPGNITLSNAATLVLGGIAAGFLATGV
Ga0210091_1002417	Ga0210091_10024172	F105432	VKIRYLFISALISIGLLYVACGQTPEKSAKKTTTAAEKRSAEQKNTVRIKHLSGEILAINAKTKTITVRFKDENVDLKFDNGTVVKIDLDSVKPSEIPLGARATVKYIERKGQHLAKGIFISTETAEKKEGTPQSSFRNSARQGYESIGAPVSSTT
Ga0210091_1002587	Ga0210091_10025871	F035352	PVLTNSDEEYLMLIEVSEEFERQKIAKTAREKSGNPAEIILRNHLIRRNLTLSLIPDVTIQGSKIKNDLLLLKSGVDPNQKTYLSNQVKMVIEVKNNSVGGKTLENGKQQDPSKEMRVKFNELEATTNVKNFAVVVLSEMLLPHRTPYRWRFKEDMIGKENCKVFTLVARQLYPPGGLYIKSNIEDMLQKGQMKKTGEFLALINYLKCL
Ga0210091_1003139	Ga0210091_10031392	F087389	MLMLIGAIVYIMSFVSDATLSSQTISSTIMPLIIIYGFFGIVLLIIGKKGHDYIMPR
Ga0210091_1004366	Ga0210091_10043662	F049734	MSESKNYGFQTQFTIVKKYHRHVLWLILGLLFALDIFTTSMSLHLGNFEKNPLMIPFAGNPALHGIVKLLAYIFLFFVIERAVIFIQERKPEKTPFWIKLNFQTLYGLIIFVLIYLIWLYLYVVASNILIIS
Ga0210091_1004641	Ga0210091_10046411	F016481	MMHGKEMKETEMEGGEAWWKQIPEEQKKAFMKAKLDYKIKKVQAKMDFLKELQKIFG
Ga0210091_1005336	Ga0210091_10053362	F064689	VKCGKCASAVIYPEGLDGEIVCATCGLVIEGTFSLKHFSQWKPEWFSNWNEQDSETLKEWLTTLRAVSCQLNIPNFPYREEAARTIRKQNRILSKSKKLSKNKRATVAALMHLVLAEYDKARSIKDISNELSLDKKLVLKRVWILNKTLNQERSEIKIQRKTSTDYLHEKGGKITLNKEIVSIAENTLGQVKGSGGNPRGVAAGALYFACKKKNKISKKEIGQVFGISERTVYANEARIRRLMATKARPDSTPMIICS
Ga0210091_1005490	Ga0210091_10054901	F060094	MSNRQASHVPMQRCGLVLCGFPAFMFAAALLLSCTAQQPEGVPVYRSERGFAIGLPAQWLAVNPLELGGKENPLGTHNPQIRGLFTAEGLKALKEKALSGGVELFVNLETSDETFMESINIQVAPGSVVVEDSDVVPACAETEKSLAALYGNPVKMDACKALKIRRIPAFFMEYRVEKLALAHAQYLIQLKADRYVVMTLTCRPKNLPKLRPEFDAIAASFRAT
Ga0210091_1005748	Ga0210091_10057482	F060095	MEKKRPTEETQKEKLTPKERIAAIEEIKLRGLFLGGYAITADAAPIVFDTAEYQQLVDQFYEENKDVVTPVMLRACRENYEFFMTIVEKALNQFIEQDTTAS
Ga0210091_1007845	Ga0210091_10078451	F077451	GLGSLFGGKKSPGRWAGLAASFTELGIPIDTAKKFGPIVIDYVEHHGGEDLVDKIKDALG
Ga0210091_1009499	Ga0210091_10094992	F089951	MMHEQGMGHGMGAMQWHDMLTMEIWNKMSDEQKKTLMKRMVDGKILMKENWIKQFQFKIETMKMVKKMLDES
Ga0210091_1009515	Ga0210091_10095152	F061489	MLMIAGVLGVIVGIVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN
Ga0210091_1011201	Ga0210091_10112012	F020980	MANILVGVFAIVLCLINAAVWTFVSDMPLIGLGWVAAAFACVWLQKWSRGY
Ga0210091_1012276	Ga0210091_10122761	F034003	MKKRNKRNPVITKSNQLSFDFNTNNPIEIHKPKFDIADLRKELAWEHRPMIEIVKS
Ga0210091_1013574	Ga0210091_10135742	F013428	MSDKDVAGGPTDEQRRSIRRTTILLSLVALAIYVAFIASGVIKAQH
Ga0210091_1013935	Ga0210091_10139352	F092111	MTPEEESSEVREMIWEMSRTTNKILIFGIILIIAILAVLMYFGILSPW
Ga0210091_1015566	Ga0210091_10155662	F075042	MSDADAPPLWAVLGSLGNIILSVGMMWYILLFLSSCGTCPARPLGYLFFIAFGAIIVLSGFELLRILFPERRKSSPVSSLVTKVIEIE
Ga0210091_1017600	Ga0210091_10176001	F053087	MPLRTGVGVVKVKVWYGKDPTSKQWGCPMRQRWGLRPHQEMSPGLEDRLAFTVTATGSFNEAAALAQKWGCKVDDSTLHALTQKLGQRAEQQTQERLESAPPEREPQRAASKLAVFMLDGWQARYRGPGWKKRKTKEKRVEWHEVKVGVFYLQ
Ga0210091_1020298	Ga0210091_10202981	F097610	MDAEEIDELITNYSEFEKKIDDKIQAYQKLKDSPDSIATAILIQSMESQKKSNELAERMFHLSRVMVIFAGGALIIATGALTFASLAYFTQGTDKTFWGIVTMSIVSLGVIAILIVFYPKKGKTIPKRKK
Ga0210091_1022254	Ga0210091_10222542	F018131	MKDGYQKEVDLGRCGTVTLHLSKNGKRLLLEFDTEPEGLDKTGLNSFIDALKKVRERMQR
Ga0210091_1028262	Ga0210091_10282621	F089952	MVLEPMTMTFAEDLNQEKIQWVIENIDELFLDLEENEND
Ga0210091_1032777	Ga0210091_10327772	F052016	MSERISVIFSSTNKNFLYNCEIPISMLPRNGERIRLSIPGHSDIRCYVEDMEWQYAELEKTIDISIVARVKILKED
Ga0210091_1034255	Ga0210091_10342551	F098566	MRAALFDLGLGAEDERAIREARRGRFVLDREAALKLMTDASPLVDAAVRRRPVLSGAP

Scaffold ID

Protein ID

Family

Sequence

Ga0210091_1000005

Ga0210091_100000528

F067458

MKRFVFAGLIFLVLLQGIWIAAADDSPDYSKIVVVNLTINKSSITEKSVEMRYGHPPNIEARNGDFKGTLKTADGSTIREFNLWDPRYQLGDVLEKDNESSGYLSGYLTYSDNADLVLILPYYENQMTFELYDKKTGTLLKKVNMSQAITKFQSNYPKDPGSISVSPIQFDKSVLYVITGVVISILIIGMILSMVRKK

Ga0210091_1000069

Ga0210091_10000694

F075042

MSDTAAPPLWAVLGSLGNIILSVGMIWYLLLFLSSCSSCPARPFAFIFIIAFGVIIALSGFELFRLLFYERRKSCRVCSLVAKMVEIDGKVP

Ga0210091_1000083

Ga0210091_10000832

F071379

MSPVRSILFRSCLTVASALAGCGTPAPPKADMPSLEQRLLELERRVEGLEARPVIESPYRSKVEVQAHIKALEAERDALLVRYRDQHPDIRDINRRLGILNSQLQMMEQP

Ga0210091_1000213

Ga0210091_10002137

F065905

LVIVITTITVVFFQTAYRYFYQAFPWSVNAYHTVKYPASLAFIHPNSQSILMIVTGAVIILIILAYYPKETQSL

Ga0210091_1000221

Ga0210091_10002217

F063812

MSAKHHDSKKHEDAKPAPACHMCKEKYVYPEHPTPSGICHKCQTKIGVIILIIFVILGGIVFFGLI

Ga0210091_1000554

Ga0210091_10005542

F101438

MLRLMFSACLFVCSAASAWAGSPVDAPVSQATRFERLLDLRNNVSLVRYPQQALDLADAMSDPEFLVAAMMMSANPEIWLKAMERAGAPGVPQNLSQMATPEMLADWFYSSIDPQFQQAILTRMLDPKKPQRWMQAMSNPRFYMHALAIMNPSTPMQWMTVTADGRMIQPMQAWFDPKTYLNWMRLPMPASSDTQKSGDKPPMTTYAWKPPLRY

Ga0210091_1001206

Ga0210091_10012063

F093372

MKIIELFALFIVIGLILAGGCVAMTNKNTENITTAATFSPRSDVSDHGLNTTANVTDNSTSKLKGSLRVSIGGILYPANLSVVLDNETVGTVTPSTPLYLMVPEGNHTVIVCVSPVCEQEQVTTRFGRYVSVDFSEQLLKDVKFPNPNAEPTARILDCYKNGDEISVNVEFFNPSPKDLRMSVIISVGYSYIDDRTNIKMGDSAKGVLVQDVRAGQRITKPLTLSFASGHSFTYNSPVIEELKIK

Ga0210091_1001245

Ga0210091_10012451

F036300

MDDMVAQGFGAIVIIYGGLIVIALGVVVFITKFWSALVSGDTGFILLWCTIILVLVSLYAGCGLLLRKYGIT

Ga0210091_1001424

Ga0210091_10014241

F042655

VLDLKTFEITIPQQYLDHINREIKKPKRPNTELLELWLERELSIENEGSYGNLPTDESHVTVEVLPNGNYKVVISDVVFGMIKSHVQPEPHSHKIQNEDLFHCWLDLRTNKVYLEEHIKVKETA

Ga0210091_1001511

Ga0210091_10015113

F054975

MTKQLFSIFDNKKKFFLISEDELKKFQHYVFDGLSVFDHLDAKNLFYDVGSRQAQNDVRSWQLVCKYCPINLRCEVLIEDTSKCAIFNKLTVRNYTLHAMEEIQFQRQRLHEILDGMKNGGTCDNNCELCILCDNAGHCVAEKAMRLLRESKIEDPSGTVCVA

Ga0210091_1001578

Ga0210091_10015781

F027427

MGRRNLFASRLNGSRAAQIVIESPGRQRPTTETTDAAGEEVLETPGALSKPGCLLRRPMRTAD

Ga0210091_1001766

Ga0210091_10017662

F049732

MDVLRILLNIFLFTASLFAAALFVEKIYAGRWKWVAFGILMSFIIGFVLFPATLIAVLEALPGNITLSNAATLVLGGIAAGFLATGV

Ga0210091_1002417

Ga0210091_10024172

F105432

VKIRYLFISALISIGLLYVACGQTPEKSAKKTTTAAEKRSAEQKNTVRIKHLSGEILAINAKTKTITVRFKDENVDLKFDNGTVVKIDLDSVKPSEIPLGARATVKYIERKGQHLAKGIFISTETAEKKEGTPQSSFRNSARQGYESIGAPVSSTT

Ga0210091_1002587

Ga0210091_10025871

F035352

PVLTNSDEEYLMLIEVSEEFERQKIAKTAREKSGNPAEIILRNHLIRRNLTLSLIPDVTIQGSKIKNDLLLLKSGVDPNQKTYLSNQVKMVIEVKNNSVGGKTLENGKQQDPSKEMRVKFNELEATTNVKNFAVVVLSEMLLPHRTPYRWRFKEDMIGKENCKVFTLVARQLYPPGGLYIKSNIEDMLQKGQMKKTGEFLALINYLKCL

Ga0210091_1003139

Ga0210091_10031392

F087389

MLMLIGAIVYIMSFVSDATLSSQTISSTIMPLIIIYGFFGIVLLIIGKKGHDYIMPR

Ga0210091_1004366

Ga0210091_10043662

F049734

MSESKNYGFQTQFTIVKKYHRHVLWLILGLLFALDIFTTSMSLHLGNFEKNPLMIPFAGNPALHGIVKLLAYIFLFFVIERAVIFIQERKPEKTPFWIKLNFQTLYGLIIFVLIYLIWLYLYVVASNILIIS

Ga0210091_1004641

Ga0210091_10046411

F016481

MMHGKEMKETEMEGGEAWWKQIPEEQKKAFMKAKLDYKIKKVQAKMDFLKELQKIFG

Ga0210091_1005336

Ga0210091_10053362

F064689

VKCGKCASAVIYPEGLDGEIVCATCGLVIEGTFSLKHFSQWKPEWFSNWNEQDSETLKEWLTTLRAVSCQLNIPNFPYREEAARTIRKQNRILSKSKKLSKNKRATVAALMHLVLAEYDKARSIKDISNELSLDKKLVLKRVWILNKTLNQERSEIKIQRKTSTDYLHEKGGKITLNKEIVSIAENTLGQVKGSGGNPRGVAAGALYFACKKKNKISKKEIGQVFGISERTVYANEARIRRLMATKARPDSTPMIICS

Ga0210091_1005490

Ga0210091_10054901

F060094

MSNRQASHVPMQRCGLVLCGFPAFMFAAALLLSCTAQQPEGVPVYRSERGFAIGLPAQWLAVNPLELGGKENPLGTHNPQIRGLFTAEGLKALKEKALSGGVELFVNLETSDETFMESINIQVAPGSVVVEDSDVVPACAETEKSLAALYGNPVKMDACKALKIRRIPAFFMEYRVEKLALAHAQYLIQLKADRYVVMTLTCRPKNLPKLRPEFDAIAASFRAT

Ga0210091_1005748

Ga0210091_10057482

F060095

MEKKRPTEETQKEKLTPKERIAAIEEIKLRGLFLGGYAITADAAPIVFDTAEYQQLVDQFYEENKDVVTPVMLRACRENYEFFMTIVEKALNQFIEQDTTAS

Ga0210091_1007845

Ga0210091_10078451

F077451

GLGSLFGGKKSPGRWAGLAASFTELGIPIDTAKKFGPIVIDYVEHHGGEDLVDKIKDALG

Ga0210091_1009499

Ga0210091_10094992

F089951

MMHEQGMGHGMGAMQWHDMLTMEIWNKMSDEQKKTLMKRMVDGKILMKENWIKQFQFKIETMKMVKKMLDES

Ga0210091_1009515

Ga0210091_10095152

F061489

MLMIAGVLGVIVGIVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN

Ga0210091_1011201

Ga0210091_10112012

F020980

MANILVGVFAIVLCLINAAVWTFVSDMPLIGLGWVAAAFACVWLQKWSRGY

Ga0210091_1012276

Ga0210091_10122761

F034003

MKKRNKRNPVITKSNQLSFDFNTNNPIEIHKPKFDIADLRKELAWEHRPMIEIVKS

Ga0210091_1013574

Ga0210091_10135742

F013428

MSDKDVAGGPTDEQRRSIRRTTILLSLVALAIYVAFIASGVIKAQH

Ga0210091_1013935

Ga0210091_10139352

F092111

MTPEEESSEVREMIWEMSRTTNKILIFGIILIIAILAVLMYFGILSPW

Ga0210091_1015566

Ga0210091_10155662

F075042

MSDADAPPLWAVLGSLGNIILSVGMMWYILLFLSSCGTCPARPLGYLFFIAFGAIIVLSGFELLRILFPERRKSSPVSSLVTKVIEIE

Ga0210091_1017600

Ga0210091_10176001

F053087

MPLRTGVGVVKVKVWYGKDPTSKQWGCPMRQRWGLRPHQEMSPGLEDRLAFTVTATGSFNEAAALAQKWGCKVDDSTLHALTQKLGQRAEQQTQERLESAPPEREPQRAASKLAVFMLDGWQARYRGPGWKKRKTKEKRVEWHEVKVGVFYLQ

Ga0210091_1020298

Ga0210091_10202981

F097610

MDAEEIDELITNYSEFEKKIDDKIQAYQKLKDSPDSIATAILIQSMESQKKSNELAERMFHLSRVMVIFAGGALIIATGALTFASLAYFTQGTDKTFWGIVTMSIVSLGVIAILIVFYPKKGKTIPKRKK

Ga0210091_1022254

Ga0210091_10222542

F018131

MKDGYQKEVDLGRCGTVTLHLSKNGKRLLLEFDTEPEGLDKTGLNSFIDALKKVRERMQR

Ga0210091_1028262

Ga0210091_10282621

F089952

MVLEPMTMTFAEDLNQEKIQWVIENIDELFLDLEENEND

Ga0210091_1032777

Ga0210091_10327772

F052016

MSERISVIFSSTNKNFLYNCEIPISMLPRNGERIRLSIPGHSDIRCYVEDMEWQYAELEKTIDISIVARVKILKED

Ga0210091_1034255

Ga0210091_10342551

F098566

MRAALFDLGLGAEDERAIREARRGRFVLDREAALKLMTDASPLVDAAVRRRPVLSGAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025975: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences