3300006825: Combined Assembly of Gp0125114, Gp0125115, Gp0125116

Overview

Basic Information

• IMG/M Taxon OID: 3300006825
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125114 | Ga0101939
• Sample Name: Combined Assembly of Gp0125114, Gp0125115, Gp0125116
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72554893
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Williamwhitmaniaceae → Williamwhitmania → Williamwhitmania taraxaci	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074913	Metagenome / Metatranscriptome	119	Y
F090409	Metagenome	108	Y
F092111	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101939_107851	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Williamwhitmaniaceae → Williamwhitmania → Williamwhitmania taraxaci	1597
Ga0101939_127386	Not Available	644
Ga0101939_135331	Not Available	536

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101939_107851	Ga0101939_1078512	F074913	MQFSAFVLALLPTFGGMCMLPQHRGGAVFALVVRCRIMMLFVYYRVGKNRDTRRESPAGAGAGRGASHKNRLFSYSIVATGAAIAYTDLFR*
Ga0101939_127386	Ga0101939_1273861	F090409	MKKQFAGTLLTSFGMMGSVHFNLELPGSIIGDTNQFLEEAKGMRVLVTVETEEVMA*
Ga0101939_135331	Ga0101939_1353311	F092111	MTPEEEGSDVREMVWEMSRTTNKILFFGIILILAILAVLMYCGIIAFPSLAVLPLAKSGA