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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028923 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129311 | Gp0324998 | Ga0310375 |
| Sample Name | Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG0 msp |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 230638149 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metagenomes From Methanogenic Benzene-Degrading Culture |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Anaerobic Enrichment Culture → Metagenomes From Methanogenic Benzene-Degrading Culture |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | na → na → na |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 36.0 | Long. (o) | -97.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046219 | Metagenome | 151 | Y |
| F048390 | Metagenome / Metatranscriptome | 148 | Y |
| F073228 | Metagenome / Metatranscriptome | 120 | N |
| F090409 | Metagenome | 108 | Y |
| F092111 | Metagenome / Metatranscriptome | 107 | Y |
| F097703 | Metagenome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0310375_1000699 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales | 19505 | Open in IMG/M |
| Ga0310375_1000827 | All Organisms → cellular organisms → Archaea | 16502 | Open in IMG/M |
| Ga0310375_1022294 | Not Available | 1011 | Open in IMG/M |
| Ga0310375_1030392 | Not Available | 815 | Open in IMG/M |
| Ga0310375_1045005 | Not Available | 625 | Open in IMG/M |
| Ga0310375_1052422 | Not Available | 567 | Open in IMG/M |
| Ga0310375_1057245 | All Organisms → cellular organisms → Bacteria | 536 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0310375_1000699 | Ga0310375_100069916 | F092111 | MTPEEESSDVREMVWEMSRMTNKILIFAVALILGILAALIYCGIISSPH |
| Ga0310375_1000827 | Ga0310375_100082711 | F090409 | LAKDRSNGGDRVKKEFAGTLQTSFGMMGSVHFSLEMPGSLVGDANQFLEGARRKRVLVTVETQEVAD |
| Ga0310375_1022294 | Ga0310375_10222941 | F073228 | TIGDIMDVNNSKYGEFLYKIVMVYPHNLEVDQTELARLIKINNNTLTFERKTGEKFTLDERDIEHMDLFRSPNYKGGE |
| Ga0310375_1030392 | Ga0310375_10303921 | F097703 | MFFFEQTFQTVLNGVSGAFGPMAAITNIANAVLLLCALFAVYEAYARGGDARMIGIAAVKFLLLGLVLFFGQRLMRGWFHIVAKR |
| Ga0310375_1045005 | Ga0310375_10450051 | F073228 | MAITIGDIMEVENSKYGEFLYRIVMVFPHNLEVDKTELARLIKINNNTLTFERKTGEKFTLDERDIEHMDLFKSPNYRGGE |
| Ga0310375_1052422 | Ga0310375_10524221 | F048390 | MVRFVRTLQHRVTPQGRDFYALSIPPQVAEALGLQAGGEVSICVNPVKKGKFEITLK |
| Ga0310375_1057245 | Ga0310375_10572452 | F046219 | LIRRAIDLRVSLKLGVRIGLDEIRADEFLAMLVLEEERDRLDREQLNNRGRQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |