3300006669: T14 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times

Overview

Basic Information

• IMG/M Taxon OID: 3300006669
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125106 | Ga0101735
• Sample Name: T14 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55029819
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1
Not Available	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064746	Metagenome / Metatranscriptome	128	N
F090409	Metagenome	108	Y
F092111	Metagenome / Metatranscriptome	107	Y
F093892	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101735_106203	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1478
Ga0101735_106283	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1468
Ga0101735_108318	Not Available	1251
Ga0101735_111952	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1011
Ga0101735_113176	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	953
Ga0101735_127035	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	598

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101735_106203	Ga0101735_1062033	F093892	MIFLSKYQDNQLAEPVKTKTSPFRSLDRTCNQIEEVFTREKSPERKTYI*
Ga0101735_106283	Ga0101735_1062833	F090409	MKKQFAGTLLTSFGMMGSVHFNLELPGSIIGDTNQFLEEAKGKRVLVTVETEEVVA*
Ga0101735_108318	Ga0101735_1083182	F090409	LAKGSSNGGDRMKKEFAGILQTSFGLTDSVDISLEMPGYLIGDANQFLEGARRKRVLVTVEIQEVAD*
Ga0101735_111952	Ga0101735_1119521	F092111	VTPEEESSDVREMVWEMSRMTNKILIFGIILVLAILAVLIYLGILTF
Ga0101735_113176	Ga0101735_1131761	F064746	MLKTYLVGLVVLYAVMACGCLDTAQFKKSVTIDGHTFTAVLDDSWTNTSGEVATYVPTNLENQYGIPTGAYDWAGFEDYDAFSYRSGEPSGSVTKYGWAHIFVLKPKKDLAGSSSTDILKHAAYLTINPQNHRNAVLGDDLTEKEIEYNGKEAYLVEVEGELITPANGDDFINDNSYGAIAFFLDDDTVALIDVETTNNFRMSSKDVIDSITVT*
Ga0101735_127035	Ga0101735_1270351	F064746	LVCGCLDTAAEQKSVMIDGYTFTASLNDKWDTSYGEVSKYNPADLEDQFGIPGGAYDWTGFEDYGAFNYRSGEPSGSITKGGWANIFVLKPDDDLSDSSSIDILKHATYLLINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAVAFFLDDNTVALIGVETTNDFGMSAWDVIDSITVS