3300006888: Combined Assembly of Gp0125122, Gp0125123, Gp0125658

Overview

Basic Information

• IMG/M Taxon OID: 3300006888
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125122 | Ga0102492
• Sample Name: Combined Assembly of Gp0125122, Gp0125123, Gp0125658
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 86542815
• Sequencing Scaffolds: 9
• Novel Protein Genes: 12
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
Not Available	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020363	Metagenome / Metatranscriptome	224	Y
F030486	Metagenome / Metatranscriptome	185	Y
F040697	Metagenome / Metatranscriptome	161	Y
F064732	Metagenome / Metatranscriptome	128	Y
F064746	Metagenome / Metatranscriptome	128	N
F074913	Metagenome / Metatranscriptome	119	Y
F092111	Metagenome / Metatranscriptome	107	Y
F101218	Metagenome / Metatranscriptome	102	Y
F106197	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102492_104650	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2295
Ga0102492_104883	All Organisms → cellular organisms → Archaea	2205
Ga0102492_106272	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1809
Ga0102492_117273	Not Available	890
Ga0102492_122291	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	759
Ga0102492_123470	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	735
Ga0102492_123983	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae	725
Ga0102492_130241	All Organisms → cellular organisms → Archaea	631
Ga0102492_142024	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102492_104650	Ga0102492_1046502	F020363	MWRWRRVAVARVFALVVRCRDMILFVYSRVGKNRDTRRESPAGAGAGRTADHLTVLFSQKFLAVRKANDIYRPVMLRFLTCLYCSKL*
Ga0102492_104883	Ga0102492_1048832	F064732	MEAAAEAALAAAPERCTMPPAQSAERHVKFPSSPMDPGPYIAAIATRSTSQQDPVPPGHPEDTNYLIVI*
Ga0102492_104883	Ga0102492_1048833	F040697	LKETVIAMKLIEKLVDDNVMDDILKEAADGYGDLIAAALVHKVSVKSLQTRVTQLRDLRAAWIS*
Ga0102492_106272	Ga0102492_1062721	F030486	PNVRRYVALPQSRGGACFCTRGAVQDYAVNSLFSRWQKP*
Ga0102492_117273	Ga0102492_1172731	F074913	MLNLTFGGMWRWRRVAVARVFALVVRCRVMMLFLYSRVGKNRDTRRGYPAGAGAACAANHKMVLFSQKTLAAQKPMTYTDLLGQVVVY*
Ga0102492_119451	Ga0102492_1194512	F020363	ALTFGGMWRWRRVAVARVFALVVRCGIMMLFVYSRVGKNRDTSRESPAGAGAGRTADHLAILFSQKVLAVRKANCISRPFMHRNYYLLFAVSVKHEILLKSPA*
Ga0102492_122291	Ga0102492_1222912	F092111	MTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLM
Ga0102492_123470	Ga0102492_1234702	F106197	VAAGVLAEVGFALGCYLFIQPFSTKCVSPILCISVDSVSADTISAQIDSFDFLSGDWYCGSNQGGANVWIKNTGDVGHLFWVSYEVMDRRGQWYSAPPESVYAEPGDSTYFVSPVWNIPDDAELGEYQADFYLYGYYDSRTGELSEQLDQVDQVRAFSVVG*
Ga0102492_123983	Ga0102492_1239832	F020363	LPLLALTFGGMWRWRRVAVARVFALVVRSRIKRLLLYSRVGKNRDTLRESPARAGAGRTADHLSVLFSQKVLAVRKSQ*
Ga0102492_126049	Ga0102492_1260491	F064746	MNKIIWIALILLLGVFAIGGMSGTSGNDDAKNVTIDGYTFEGDFDNKWISGYGDTKTYKPANLEDQFGIPIGAYDWTGTENYNAFYYESGEPSGSITKYGWANIFVLKPDEDMANVLKSATRLLINPRDHRNAVVAGDLTEKYIEYN
Ga0102492_130241	Ga0102492_1302412	F101218	MSKQGPKPALPRVKEPPPLPSLGELIAESRALGWDDLAGSMEKLRHLETPEGQKALERREKRLSRL*
Ga0102492_142024	Ga0102492_1420242	F030486	PITIMLAAIVTNVRRYVALAQSRGGARFCTRGEMQDYATITLFLRWQKP*