Sample 3300006838

Overview

Basic Information
IMG/M Taxon OID	3300006838 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117429 \| Gp0125106 \| Ga0101938
Sample Name	Combined Assembly of Gp0125106, Gp0125107, Gp0125108
Sequencing Status	Permanent Draft
Sequencing Center	Shell Corporation
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	115883943
Sequencing Scaffolds	11
Novel Protein Genes	12
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
Not Available	4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	UK (Newcastle upon Tyne)
Coordinates	Lat. (^o)	54.971158	Long. (^o)	-1.703654	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F045728	Metagenome / Metatranscriptome	152	Y
F047387	Metagenome / Metatranscriptome	150	Y
F050777	Metagenome / Metatranscriptome	145	N
F064732	Metagenome / Metatranscriptome	128	Y
F064746	Metagenome / Metatranscriptome	128	N
F087385	Metagenome	110	Y
F090409	Metagenome	108	Y
F092111	Metagenome / Metatranscriptome	107	Y
F100040	Metagenome	103	N
F102132	Metagenome	102	Y

Family

Category

Number of Sequences

3D Structure?

F045728

Metagenome / Metatranscriptome

152

F047387

Metagenome / Metatranscriptome

150

F050777

Metagenome / Metatranscriptome

145

F064732

Metagenome / Metatranscriptome

128

F064746

Metagenome / Metatranscriptome

128

F087385

Metagenome

110

F090409

Metagenome

108

F092111

Metagenome / Metatranscriptome

107

F100040

Metagenome

103

F102132

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0101938_1001102	All Organisms → cellular organisms → Bacteria	7446	Open in IMG/M
Ga0101938_1009397	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1852	Open in IMG/M
Ga0101938_1010059	Not Available	1773	Open in IMG/M
Ga0101938_1010711	Not Available	1708	Open in IMG/M
Ga0101938_1011164	Not Available	1660	Open in IMG/M
Ga0101938_1012638	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1530	Open in IMG/M
Ga0101938_1015158	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
Ga0101938_1022817	Not Available	1018	Open in IMG/M
Ga0101938_1036667	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
Ga0101938_1055537	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	543	Open in IMG/M
Ga0101938_1060322	All Organisms → cellular organisms → Bacteria → Terrabacteria group	511	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0101938_1001102

All Organisms → cellular organisms → Bacteria

7446

Open in IMG/M

Ga0101938_1009397

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii

1852

Open in IMG/M

Ga0101938_1010059

Not Available

1773

Open in IMG/M

Ga0101938_1010711

Not Available

1708

Open in IMG/M

Ga0101938_1011164

Not Available

1660

Open in IMG/M

Ga0101938_1012638

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.

1530

Open in IMG/M

Ga0101938_1015158

All Organisms → cellular organisms → Bacteria

1353

Open in IMG/M

Ga0101938_1022817

Not Available

1018

Open in IMG/M

Ga0101938_1036667

All Organisms → cellular organisms → Bacteria

727

543

All Organisms → cellular organisms → Bacteria → Terrabacteria group

511

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0101938_1001102	Ga0101938_100110210	F087385	LILPGGVLLSQKVTLLVPSALEVLTSVFGMGTGVAPPL*
Ga0101938_1008488	Ga0101938_10084883	F100040	VLEKYLFSQMIEEILEDAMTNTRARPDLEKMISLGRKGIIDPDHMKRWGEFKKEWAEADLIIWNKLKERMATGDSGALELRPPLSPSEKEWAKKIIMQAEERNLC*
Ga0101938_1009397	Ga0101938_10093971	F050777	MEDDIIYEKAVEILNPGRLYFALKAMRSSPVTISFDMGDLNLTSGPVSSLISIEGDLPEEVQAMQWLVPLEDLKILQDLIPPDTYYWENRALVLGWQCDLVVDSAIDEKNPLESIEQEEKYRDQLLVSNREYRKLQMALDDCNSHIPQVLFSIYPDRLNFAVNCSQHDEIVGTMIQMKGQKEA*
Ga0101938_1010059	Ga0101938_10100592	F050777	MDDDIVYEKAVEILNPGRLYFAIKAMRKSPVKISFDMGDLNLTSGAASSLVSIEGKLPEEVQAMQWLVPLEDLKILQDLIPPDTYYWENRAIILEWQCDLVVDSTIDEKSPLESLDQEEEYRDQLLVTNREYRQLQMELDDCNAHIPQVLFSIYPDRLNFAVNCSEHDEIVGTMIQMRSQKEE*
Ga0101938_1010711	Ga0101938_10107111	F092111	MTPEEEGSDVREMVWEMSRTTNKILILGIILILAILAVLMYCGIIAFPSLAVLPLAKSGAL*
Ga0101938_1011164	Ga0101938_10111644	F064732	MEAAAGAALAAARERCTMPPAQSAERHVKFPSSPMAPGQCTAAIATRSTSLPGRPEDTDHLMGLKSDRVSQ*
Ga0101938_1012638	Ga0101938_10126382	F064746	MLKTYLVGLVVLYAVMACGCLDTAQFKKSVTIDGHTFTAVLDDSWTNTSGEVATYVPTNLENQYGIPTGAYDWAGFEDYDAFSYRSGEPSGSVTKYGWAHIFVLKPKKDLAGSSSTDILKHAAYLTINPQNHRNAVLGDDLTEKEIEYNGKEAYLVEVEGELITPANGDDFINDNSYGAIAFFLDDDTAALIDVETTNNFRMSSK
Ga0101938_1015158	Ga0101938_10151581	F045728	MSLASAPRQYCGQNVRTSMAVQAAPAPAGDSLLVS
Ga0101938_1022817	Ga0101938_10228171	F090409	MKKQFAGTLLTSFGMMGSVHFNLELPGSIIGDTNQFLEEAKGKRVLVT
Ga0101938_1036667	Ga0101938_10366671	F047387	MAAEVSREILTDEEYADAEYRRLLKEKYQYVDFDEFCREEGI*
Ga0101938_1055537	Ga0101938_10555371	F064746	ALILLLGVFAIGGMSGTSGNDGAKNVTIDGYTFEGDFDNKWISGYGDTKTYKPANLEDQFGIPIGAYDWTGTENYNAFYYDSGEPSGSITKYGWAHIFVLKPDEDMANVLKSATRLLIDPKHHRNAVVAGDLTEKYIEYNGRQAYLVEIKEELMDGFVDYHDYAAIAFFLDDGKVCVIDA
Ga0101938_1060322	Ga0101938_10603221	F102132	MSTKKIIKNVESAINRICDDIKEKRGGSGADKLDSLAKLVNAYSRLIERDNEKKINLEEDGDPTHYIFFAADRTDRSNVIR*

Scaffold ID

Protein ID

Family

Sequence

Ga0101938_1001102

Ga0101938_100110210

F087385

LILPGGVLLSQKVTLLVPSALEVLTSVFGMGTGVAPPL*

Ga0101938_1008488

Ga0101938_10084883

F100040

VLEKYLFSQMIEEILEDAMTNTRARPDLEKMISLGRKGIIDPDHMKRWGEFKKEWAEADLIIWNKLKERMATGDSGALELRPPLSPSEKEWAKKIIMQAEERNLC*

Ga0101938_1009397

Ga0101938_10093971

F050777

MEDDIIYEKAVEILNPGRLYFALKAMRSSPVTISFDMGDLNLTSGPVSSLISIEGDLPEEVQAMQWLVPLEDLKILQDLIPPDTYYWENRALVLGWQCDLVVDSAIDEKNPLESIEQEEKYRDQLLVSNREYRKLQMALDDCNSHIPQVLFSIYPDRLNFAVNCSQHDEIVGTMIQMKGQKEA*

Ga0101938_1010059

Ga0101938_10100592

F050777

MDDDIVYEKAVEILNPGRLYFAIKAMRKSPVKISFDMGDLNLTSGAASSLVSIEGKLPEEVQAMQWLVPLEDLKILQDLIPPDTYYWENRAIILEWQCDLVVDSTIDEKSPLESLDQEEEYRDQLLVTNREYRQLQMELDDCNAHIPQVLFSIYPDRLNFAVNCSEHDEIVGTMIQMRSQKEE*

Ga0101938_1010711

Ga0101938_10107111

F092111

MTPEEEGSDVREMVWEMSRTTNKILILGIILILAILAVLMYCGIIAFPSLAVLPLAKSGAL*

Ga0101938_1011164

Ga0101938_10111644

F064732

MEAAAGAALAAARERCTMPPAQSAERHVKFPSSPMAPGQCTAAIATRSTSLPGRPEDTDHLMGLKSDRVSQ*

Ga0101938_1012638

Ga0101938_10126382

F064746

MLKTYLVGLVVLYAVMACGCLDTAQFKKSVTIDGHTFTAVLDDSWTNTSGEVATYVPTNLENQYGIPTGAYDWAGFEDYDAFSYRSGEPSGSVTKYGWAHIFVLKPKKDLAGSSSTDILKHAAYLTINPQNHRNAVLGDDLTEKEIEYNGKEAYLVEVEGELITPANGDDFINDNSYGAIAFFLDDDTAALIDVETTNNFRMSSK

Ga0101938_1015158

Ga0101938_10151581

F045728

MSLASAPRQYCGQNVRTSMAVQAAPAPAGDSLLVS

Ga0101938_1022817

Ga0101938_10228171

F090409

MKKQFAGTLLTSFGMMGSVHFNLELPGSIIGDTNQFLEEAKGKRVLVT

Ga0101938_1036667

Ga0101938_10366671

F047387

MAAEVSREILTDEEYADAEYRRLLKEKYQYVDFDEFCREEGI*

Ga0101938_1055537

Ga0101938_10555371

F064746

ALILLLGVFAIGGMSGTSGNDGAKNVTIDGYTFEGDFDNKWISGYGDTKTYKPANLEDQFGIPIGAYDWTGTENYNAFYYDSGEPSGSITKYGWAHIFVLKPDEDMANVLKSATRLLIDPKHHRNAVVAGDLTEKYIEYNGRQAYLVEIKEELMDGFVDYHDYAAIAFFLDDGKVCVIDA

Ga0101938_1060322

Ga0101938_10603221

F102132

MSTKKIIKNVESAINRICDDIKEKRGGSGADKLDSLAKLVNAYSRLIERDNEKKINLEEDGDPTHYIFFAADRTDRSNVIR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006838: Combined Assembly of Gp0125106, Gp0125107, Gp0125108

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences