3300006883: T10 (1) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times

Overview

Basic Information

• IMG/M Taxon OID: 3300006883
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125656 | Ga0102488
• Sample Name: T10 (1) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42409902
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047387	Metagenome / Metatranscriptome	150	Y
F048390	Metagenome / Metatranscriptome	148	Y
F059489	Metagenome / Metatranscriptome	134	Y
F092111	Metagenome / Metatranscriptome	107	Y
F102132	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102488_110422	Not Available	752
Ga0102488_111811	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	698
Ga0102488_113471	All Organisms → cellular organisms → Bacteria	641
Ga0102488_114687	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	606
Ga0102488_115342	All Organisms → cellular organisms → Archaea	588

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102488_110422	Ga0102488_1104222	F048390	VILRYHMVRFVRTLQHRVTPKGRDFYALSIPPQVAEALNLKAGGAVSICVNPVKTGTFEVTIKAVSDELS*
Ga0102488_111811	Ga0102488_1118111	F092111	VTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGIITFPSLTNGLINITK
Ga0102488_113471	Ga0102488_1134712	F102132	MNTQTVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDKEKEIDPMEDGDPNYYKKLEARQTDRRGIIR*
Ga0102488_114687	Ga0102488_1146871	F059489	AMTQSNDQHAVDVDTYISKNSRFKSFVYDRGEIQTIAENLGFKTDHVRTEIRKLGYRLIKNSSHGRMIWKRDQLERTSLTIAGI*
Ga0102488_115342	Ga0102488_1153422	F047387	MHAIDIRTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*