3300006833: Combined Assembly of Gp0125117, Gp0125118, Gp0125119

Overview

Basic Information

• IMG/M Taxon OID: 3300006833
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125117 | Ga0101940
• Sample Name: Combined Assembly of Gp0125117, Gp0125118, Gp0125119
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85688123
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	2
All Organisms → cellular organisms → Archaea	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040697	Metagenome / Metatranscriptome	161	Y
F064732	Metagenome / Metatranscriptome	128	Y
F080090	Metagenome / Metatranscriptome	115	Y
F090409	Metagenome	108	Y
F092111	Metagenome / Metatranscriptome	107	Y
F102132	Metagenome	102	Y
F105440	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101940_106556	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	2101
Ga0101940_113501	All Organisms → cellular organisms → Archaea	1208
Ga0101940_115042	Not Available	1113
Ga0101940_131750	Not Available	635
Ga0101940_134849	Not Available	594
Ga0101940_135365	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	588
Ga0101940_138906	Not Available	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101940_106556	Ga0101940_1065565	F080090	MNWSEPLRVDNELSNINSWREIHEKDEAALRPSIQDISSSRT
Ga0101940_113501	Ga0101940_1135011	F040697	VDDNVMDDILKEAADGYGDLIAAALVHKVSVKSLQTRVTELRDLRAAWIS*
Ga0101940_115042	Ga0101940_1150422	F102132	MSTTKVIKNLERAINRICDDRKEKKGGSGSDKLNSLSKLVNSYSRLIERSKNNEVDPLMDGDPEYYENLQKPKDRSSVIR*
Ga0101940_131750	Ga0101940_1317502	F090409	LARGRSNGGDRMKKEFAGILQTSFGMMGSVHFSLEMPGSLIGDANQFLEGARRKRVLVTIETQEVAD*
Ga0101940_134849	Ga0101940_1348492	F105440	PERHRPGRLCSGKISGGVFCLKTVVLLSEERYTEAMQSAEAKDSSINYRRLKADRSISLLYNPATRDGKFSAKLTARAGLVDSYYEAFTQSEYSESLAENNAKLQKYGWPDYENEGI*
Ga0101940_135365	Ga0101940_1353652	F092111	VTPEEESSDVREMVWEMSRMTNKILIFGIILVLAILAVLIYLGIL
Ga0101940_138906	Ga0101940_1389062	F064732	MEAAAEAALAAAPEKCTMPPAQSAERHVKFPSSPMDPGPYIAAIATRSISPQDPPVHPGHPEDTSQFDYYLIRSKQGPE*