3300006651: T8 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times

Overview

Basic Information

• IMG/M Taxon OID: 3300006651
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125097 | Ga0101725
• Sample Name: T8 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56267129
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Alkaliflexus → Alkaliflexus imshenetskii	1
Not Available	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030405	Metagenome / Metatranscriptome	185	Y
F040697	Metagenome / Metatranscriptome	161	Y
F047387	Metagenome / Metatranscriptome	150	Y
F048390	Metagenome / Metatranscriptome	148	Y
F091072	Metagenome / Metatranscriptome	108	Y
F092111	Metagenome / Metatranscriptome	107	Y
F102132	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101725_112888	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Alkaliflexus → Alkaliflexus imshenetskii	870
Ga0101725_113424	Not Available	848
Ga0101725_116763	All Organisms → cellular organisms → Archaea	738
Ga0101725_119853	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	661
Ga0101725_124774	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	574
Ga0101725_126065	All Organisms → cellular organisms → Bacteria	554
Ga0101725_129263	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101725_112888	Ga0101725_1128881	F030405	FCTRGAMQGYDGYFFILALAKTVTPGGSPRREPGRPAPRW*
Ga0101725_113424	Ga0101725_1134242	F048390	MVRFVRTLQHRVTPKGRDFYALSIPPQVAEALNLKAGGAVSICVNPVKKGKFEITLKPASCDNINP*
Ga0101725_116763	Ga0101725_1167632	F047387	MAAEISREVIILDEEYADAEYRRFLREEDKYMDFDEFCCQEGI*
Ga0101725_119853	Ga0101725_1198532	F040697	VIAMKLIEKLVDDNVMDDILKEAADGYGDLIAAALVHKVSVKCLQTRVTQLRDLRAAWIS
Ga0101725_124774	Ga0101725_1247741	F092111	VTPEEEGSDVREMVWEMSRTTNKILIFGIILILAILAVLMYCGI
Ga0101725_126065	Ga0101725_1260652	F102132	MNTQTVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDKEKEKDYDPMEDGDPNYYKKLEANNKDRRGIIR
Ga0101725_129263	Ga0101725_1292632	F091072	MAGTMKETAMPVRGETDEEIKALLKGTDVAWTQYKRDHGTRVTS