3300001632: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001

Overview

Basic Information

• IMG/M Taxon OID: 3300001632
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057252 | Ga0003840
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33980765
• Sequencing Scaffolds: 60
• Novel Protein Genes: 66
• Associated Families: 64

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4
Not Available	22
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Onygenales → Onygenaceae → Coccidioides → Coccidioides immitis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000407	Metagenome / Metatranscriptome	1172	Y
F000579	Metagenome / Metatranscriptome	1011	Y
F000955	Metagenome / Metatranscriptome	822	Y
F001420	Metagenome / Metatranscriptome	698	Y
F002208	Metagenome / Metatranscriptome	583	Y
F003697	Metagenome / Metatranscriptome	473	Y
F004436	Metagenome / Metatranscriptome	438	Y
F004980	Metagenome / Metatranscriptome	416	Y
F005595	Metagenome / Metatranscriptome	395	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20235J16296_1000241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1550
JGI20235J16296_1000311	Not Available	1467
JGI20235J16296_1000438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1351
JGI20235J16296_1000547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1266
JGI20235J16296_1000565	Not Available	1259
JGI20235J16296_1000733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1169
JGI20235J16296_1001121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1031
JGI20235J16296_1001149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1023
JGI20235J16296_1001180	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1016
JGI20235J16296_1001428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	960

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20235J16296_1000241	JGI20235J16296_10002412	F012710	MRSKTYDITFAGQAGTTLHAEFDDCAVTVGPATTTLRAELPDQAALSGLVLRITGLGLEVVDLHVVALAPEQ*
JGI20235J16296_1000311	JGI20235J16296_10003112	F105604	MATPAPAAAEATGLWQGGFSGPGLPALGGAVVIAAQLPDDGAGVLVSYAGGIFTRQFWTTGPPVPQIIEILKPDEVAAVRDQVVEQLHTPGCGLDEIPLREFVEAVRLHFQQDASQRFAQAVFGSITPSSPLGLQGQVTWCDDVIGTVLGNPDGISAQSHLANVAAGNPAWLRSADLQSLVI
JGI20235J16296_1000438	JGI20235J16296_10004383	F042998	FTTLDGVRQWLGGTSPSLLPGVGSYGALYGAMFLVLLAVSVGGLFARYRKAGSL*
JGI20235J16296_1000547	JGI20235J16296_10005472	F026357	MKPGSKLELVIMLPPDLGLGPGGWTLCEASVVRVEEASEDKGLGIAATLDRIALMPEIG*
JGI20235J16296_1000565	JGI20235J16296_10005652	F001420	HESAALQGHPVLAEGYRAFSAALGTDAVQVQPDSKSLAAGLRTAARPWGGNYCSCQLGADGPGWVMPALGPSQDEVNRRLARADGLQAEPDPRLGGAINLIRPSLANTGRLHTAQQATADHRASFETFLSQRGLNAQSLAASPAAGTPRAL*
JGI20235J16296_1000733	JGI20235J16296_10007333	F025106	SVEWTPDGHGLTYLHTVGSARHLYLQPLTGGPPIQLTHFDTEPSLIASYGWSRDGKKFAITRARYNDTDVVMFSGFH*
JGI20235J16296_1001121	JGI20235J16296_10011213	F008215	MVMPLAGRVVAAVIGGLLVLTAASSVVGTLIVTRSVGSRLTWWVDRTVDRTYQL
JGI20235J16296_1001149	JGI20235J16296_10011491	F087491	MSTSSIAQVTTGGRQRTTRRSDRRAIALAIVLGAQL
JGI20235J16296_1001180	JGI20235J16296_10011802	F041946	KLLTAEPGADVLAVATSEEDRRLLASILMDEQEELTAETVEGAVRALRRIYLRRRLEEVQMALQRPGVAMAERQALLQEKVRLKLARRDPSGAEADGKAS*
JGI20235J16296_1001428	JGI20235J16296_10014282	F019956	MGAAVLADAGVEALGELFPGWRIWADLSTGWHACRRGGFIQDYHQGAPAFYVHAASVGELAVQLRWQEAAASTRAVRLLPAITA*
JGI20235J16296_1001517	JGI20235J16296_10015171	F009897	GMVYVLRPPGEDPKAILRAARLVLPEDLYQELARQLGLPASWPIVLADYDRLVVTHSACDGMVYVLRPPGEDPKAILRAARLVLPEGSYEELADQLGIPAGWAAG*
JGI20235J16296_1001576	JGI20235J16296_10015762	F009897	SCQEPAGGPLPADQARIVMADYDRVVVTCSKPDDTVLVLRPPGEDPKAILRVARLVLSEAHYAELAGRLGMPASWPIIMADYDRLVVTCSKRDDTVLVLRPPGEDPKAVLRAARLVLAEGPYGELADQLGEPAGWPME*
JGI20235J16296_1001667	JGI20235J16296_10016671	F000579	MVPDNTGSVSVIDFRRQRVVLQWHVLGGTWTACDVPPSLVHGIALIRPSQPNICIYGHGGRLRLQVGPEQFSLAENSPRIRCSRGVVSFGLRRRFLVSGTDGVLFTHAYWTGQGEDFFRWLAARAQDPEWRVTMGRRWSEGVPATTLRAA*
JGI20235J16296_1002246	JGI20235J16296_10022461	F005595	MPEKDPASERPNPASSRLDHEESQLWRWALGLLVLFAAALAALSWQQLEELHLPYRLWAIPAGFVALAVLFAAYAFGRKREVSELKTILKGFQDRGGVTPSEEQLDQLGQLIARSQRNFKELIDSLDEVALAISLDGTLRTVNRRASEILGVPYSSLVGHKLEEFLDAPMRAEASGGLAHFLEKRNWAGVVEINLDRKS
JGI20235J16296_1002336	JGI20235J16296_10023362	F008279	KATAGTAPRPAGLQARRIERSVTAATVIELVAAFVLPVIVIAAGHSDWVLPSIVITIGPLLLWLDHLVHIRRYRVIGWALTAGPVVLVATMSGSSLAVTTGLAAGVILLGTAAAGFHDLAVIRAARPQRPLPAGTKR*
JGI20235J16296_1002357	JGI20235J16296_10023571	F089375	MNYIVNNLWLGSQQDADQLIRKNPEKISAILNVRGPDAYQPPGRDQSAEHPGKAYKWIPAPDTGIISVCHM
JGI20235J16296_1002412	JGI20235J16296_10024121	F034637	NIQQNLPSEIDRKAAAKLPEARRIAEELIVQGRHSPI*
JGI20235J16296_1002629	JGI20235J16296_10026291	F061934	GAGSLYITARLARRVAALGRRWSVGRPVRRRLAAAAGLAVLTGLAAFWTMQGQFRGW*
JGI20235J16296_1002710	JGI20235J16296_10027101	F017014	LFVVGICNQHVAILRLLQVAERSVARLLFAFRVLPLAASVIVTFVFVVPSFQLLEPRSIDEGMGAMPLALGICALLLIACGCYRVMVAQTTTSRVVARWLEGARALNAGADAPPETVAFCSRRETPPLTL
JGI20235J16296_1003019	JGI20235J16296_10030191	F007658	MGYQALLFCSDEKLAAIVTQIFSELEFAIEAVHEPFAA
JGI20235J16296_1003191	JGI20235J16296_10031911	F049817	VAESTGAAGLQREREERYRKDRESWRARLRQYQGARQLPTSARDGWWSLDDGDEYDEMCRWPVISDDFVRGPPPAEARESA*
JGI20235J16296_1003207	JGI20235J16296_10032072	F057540	VISLAATGLSDTALRDVGVLGLAVCLVGSKNQRLVLRS*
JGI20235J16296_1003207	JGI20235J16296_10032073	F057540	AAIASVLMLEIVISLAATGLSDTALRDVGVLGLAVCLVGSKNQHLVLRS*
JGI20235J16296_1003215	JGI20235J16296_10032151	F035998	VGISDGDLVRLARDGDPVAFRLLVERHQPMTRARA
JGI20235J16296_1003423	JGI20235J16296_10034232	F024745	MAALGGAETLRFTTHQLVLTHEFAAGAPWVTSVPRNDHLVAKYAGIYAAEVLVAYELKKPHSWLPGDKFIRKLWWAYPAAMVPIHIKNGVRSIRTQAPSCPPEECQSQ*
JGI20235J16296_1003697	JGI20235J16296_10036972	F006628	MISRLIKAALLAALLAVVVQSLPDIKRYLELREM*
JGI20235J16296_1003697	JGI20235J16296_10036973	F038345	METIVGFVAGYLVGTREGRDGLERLRSSWHSIRTSPEVRKLAGDAITLAESVVRQRSGSASIGGAVGN
JGI20235J16296_1003848	JGI20235J16296_10038482	F000955	MDRTVRFQETLRRLAMIDEGFVEDQAGIGLAGTSVLDPKTT
JGI20235J16296_1003876	JGI20235J16296_10038761	F065974	PHDDIAEQTARVKLLLKPDAMYVDLPDLGLDPFFAAPERMVDLVNKYVPA*
JGI20235J16296_1004237	JGI20235J16296_10042372	F101947	MASSGPVYERLGAKILSLPDVIAQSVGFMGPVFSSAFVIPLV
JGI20235J16296_1004580	JGI20235J16296_10045802	F063891	MSARQCPNCMAFVPAGQIVAYSYDLVCPNCQHPLEIAPVSQYLSAFVGLVAGAIVWWLANAHYSKESEALSWVLPMLYSYLAFSVVAPLALIFTADLKLKPL
JGI20235J16296_1004800	JGI20235J16296_10048001	F075831	MTVALVLATEADAGLRIQLAALGVRKVDAAERAGPGLLTIAATARAVAERV
JGI20235J16296_1004854	JGI20235J16296_10048541	F052930	CAVMLFAIVLLLTIGCIAFILAREGQGGPRPNGLRGYIRARGWGLLLLPVAMAAAVMAGGAHGLIPAELGIAVLAVVFAPKLAAKLVPYGVLGLAVFGVMLAKTYRDGNTSKVQYLFVHAGPGAWGSRPVLAEAGVLFAVGLWLLLRLDAPGAGLFRALAARWLDRRRGGISAAQALLLVPVAGLAMQLLGPGNWFGIGAVDGLDAAVIDLAVATA
JGI20235J16296_1005084	JGI20235J16296_10050841	F056007	RVSIEIPGSILEIEQTDAGLAREWREATRWAFFGATKAGFVVSEFCRSIRGQQGPGAYLLQQSGEVGEPIPEVEKDQG*
JGI20235J16296_1005104	JGI20235J16296_10051041	F033574	LSGNSTTEKSAYGSYEDRMFLMGRALDAMESYPILGIGVQNFPKYSLIWHDVHMTYMQVGAEGGIPVLIIYLLFFRKAFQNLKILRKRTDLAPDIVLFVGALTSSLVGFVVGALFAPETYQYFPYFAVAFTATLLQTIKEQDKEGVNPVTPPPKRGRHFLEVYADHGGPVAVSPVR*
JGI20235J16296_1005648	JGI20235J16296_10056482	F013078	MQPGQEPRWRPLKRHDSHIAEQMVDRAAELARDSHARTRHAAVLIKDGSLLAWGTNGVPFPGEDHCYCKFGEVGHHDLCRTHAEQRAITLARGGDGWRMLPGSKLIYVRLEAD
JGI20235J16296_1005858	JGI20235J16296_10058582	F000407	YSLLARGLIMSRAFCIALMAAAAVTSAGCHSAYAVRPVPRIAADSVGKPIGRLQEAFGQPRKIDTTPTKEVYVWFLPEKPAGAPVGFHGCEMEVTVDARSEHVLGYSLSNVGWGKCPEVARKIRVAER*
JGI20235J16296_1006291	JGI20235J16296_10062911	F032465	VVLSHTGPVEPAADSVGGHIQPSSGRHRWARRPRFAGPSDRALHWLAGWYAIALRLGGAVLFTGVAVLAATRQISGWWLAAPLAALCFWSAFFAW
JGI20235J16296_1006317	JGI20235J16296_10063172	F042044	AENSVQAFVLYRELDYFEQLGALEKHGGVDFEMIKTLLGRRLIDRWELWQPTIDAMGGGDIYPMFDRLVTKMRAVV*
JGI20235J16296_1006950	JGI20235J16296_10069501	F101524	MMDGENKKSPMKRFMDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAIAEIEDDSQRSFPPRRQ*
JGI20235J16296_1007038	JGI20235J16296_10070381	F050790	MGVRKTDASLPIDAGFLAQLQRHVAAREIERGIACLASRPDLIAPLDPSQGNSARLMAHLAIWTDIGFSGPPL
JGI20235J16296_1007070	JGI20235J16296_10070702	F000042	MKNIKFVVKVNRGGAHAPQYVLRVDRLPIQTTTNRKLALVMGRFTAEDAVKSMQNSHCNPELVSV
JGI20235J16296_1007312	JGI20235J16296_10073122	F002208	DHRPAGRTAIRSKPVRITLDLSPELYREFTHWVDSAAVTLDVPRVALADAMRAMIRVTTENPDGVLERLRSERGR*
JGI20235J16296_1007323	JGI20235J16296_10073231	F012840	MAKAGERAILGLLVFAFIVGLGLLAALVPVGHGFTPKGGGWFTPAVVGGAFTLHPLFIAVPAAACFVLGLLDWRHPWRVEHLDLLALAGFFPVAMLLSDDLSRVGLWLAASCLGWLFARLVGACHGAW
JGI20235J16296_1007358	JGI20235J16296_10073582	F041884	GLDFPFCTPRQQAAEAAYLLAHGYTLVFADDGYEVLHRPADWRTAQALAHPLPAARLHTNICY*
JGI20235J16296_1007523	JGI20235J16296_10075231	F004436	MAGFFPLSRSRAVHRRSRPMQLLTEAGVVKLEVPYGQDATDQHWGCPIRERWGLTSHQQLSLALEDKLAFTITATASYEEAAALAQKWGVAVTDSSLHSLTQRLGARAQTQRQEQLKTPPVETEPKRAPAKLGVLMLDGWQVRQRGPGWGRRKTKENRVEWHEWKTGVYYPQEK
JGI20235J16296_1007709	JGI20235J16296_10077091	F056014	ETGAGTFMSVEGLPGLTVQHMLMFMEKLRGMHEQDPLAFEVCLRHVASVIEDQRREEGRTDPRERPAP*
JGI20235J16296_1007716	JGI20235J16296_10077162	F004980	MFGIFVFAVVALLCIKLIPPFFANYELEDSIKTEAVQSTYSTRSEDDIRQSIIKTARSYDIPLTPKQVRVSRIGGFGAGTLNIEADYSVPVDFP
JGI20235J16296_1007993	JGI20235J16296_10079932	F070439	LAGPASAWKTTANAWIRHCERKPAGTITVVFHDWWSTAPLDTTFSCTSLRR*
JGI20235J16296_1008258	JGI20235J16296_10082581	F013552	IKASGNEGMQHFDGEIAKLVRSGLVDLETGLGFASNATVLGQELAR*
JGI20235J16296_1008401	JGI20235J16296_10084012	F063865	MGSVFSAIEKSGPAGLVLRAIIASLLGIFLLIGFIVLRRWYRARYFRRRNQRTVALRSQWDDIVSGKIPPLDWRFDPLDCDIVESILLDQIEMSLPDDLPPLLNCLRLSGL
JGI20235J16296_1008511	JGI20235J16296_10085111	F077624	MPKLPVFRLRSSEPPTLPDLQYRAIALALSNLQLGVD
JGI20235J16296_1008517	JGI20235J16296_10085171	F035880	MVMEFAFAAAVLCVIVVAYVRGNREPPSNGPLRTEIQARVCFETSLSRVRVLGTGGFGGTHGMWISLRGPKRLTVSTDAFMVSAAQALRDYVFSGRESSIALSQAPSRLVNRDWIVITGQNGGRQVQLAI
JGI20235J16296_1009021	JGI20235J16296_10090211	F008321	IEFGELRRVAQRTIDQRQIVINNLSVRRAVQELKVARNFDQVRSVMVAAFDSNDFDAFELQLKTLPGDQAASAEANLHFHWSKFPHMAAISMQPSWKLTLDLVTTSNRRRGTMIVSRIYSQRDLQLDVNLLTSEFPTTLADALDRVLTMPEVLVPLAQSDRPPLAASL*
JGI20235J16296_1009081	JGI20235J16296_10090811	F006800	MSRRHQIAATYAFKCALLFLGCAVFSWGLQAKLSLYKTPQTPSTITVAKLLTERRSAQTVALFEKALEPDMTWETLNLIPLLILAQVIFVLTFKFYELEMNLCTSRRCDFHDP
JGI20235J16296_1009124	JGI20235J16296_10091241	F080280	QKQNRKNNGSGQSEHNSPDQKQDRNYSREYNQPVLAALRTGVGNASPALKVEMNATTNRRFV*
JGI20235J16296_1009539	JGI20235J16296_10095391	F003697	VTSSEASVPAGTAGTAKVGSTPSTRLFVRQTSGLVRDLGIPAATGISLASVAVVNTFINFNAGLTDFTKADMYLPLVVAAGIWLVAMFAYR
JGI20235J16296_1010040	JGI20235J16296_10100402	F084577	WRRPPGEPASIAALRKIWPLLLSVYLFNAFFVDMAYQFVIGLMFTVAGMLCASTLPLSEESAA*
JGI20235J16296_1010143	JGI20235J16296_10101431	F037850	MRTQREGAQLQPRGMRSAGPGDDQARFLADLRALREAAAVGYDELAARAHYPSDILKEAE
JGI20235J16296_1010347	JGI20235J16296_10103472	F076422	MPQPVLRRAAHRVAQFAILAAAILVVLLVFSRQAHAATPPATA
JGI20235J16296_1010409	JGI20235J16296_10104092	F062923	MPDATGPVLLVVGGDAKRLQWLNHHVTSHWPSAQVTTAPGTDAASLTRFVQERAPDAVIM
JGI20235J16296_1010454	JGI20235J16296_10104541	F017737	MNARTVPAGQAKAVAAPPRFDAKFIEDHKLIERYLENKLPLRGAVDLENWCRAHPEYLDKLKLSERAQASLKLLEASGHSVDLGEPPQPWWKSHYVLIGLAAVTFLSLVAAWTLVGKLSLLRSELED
JGI20235J16296_1010597	JGI20235J16296_10105972	F027336	DRRKALTHFALQMSPHDAALLRAALDQASREPEAGEAR*
JGI20235J16296_1010666	JGI20235J16296_10106661	F055947	NCGTGAQLLVSESGEAERDGLRAFEIPDRDPIAASSATEFDGQIVALWPESTGNGAVAVIKRKDTGWYEAYRVSVSCSN*
JGI20235J16296_1010667	JGI20235J16296_10106672	F030165	MDDNLLKLFIAITTFAVLLQAGILLGLFLAVRKSTARMEALAAEVTSKTLPTIEAFQSTLTELRPKIDVISTNAAESSNLIRNQLARIDATLTDALDR
JGI20235J16296_1010682	JGI20235J16296_10106822	F092503	VFSNFLDGVILGVLPLAAAGFLGWILVKSIAAATGPQIWSLVGIMAVGVILMLVARFVLRPQFFHLRRETEGRIR*