Metagenome / Metatranscriptome Family F101947

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101947
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	40 residues
Representative Sequence	MASSEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAFV
Number of Associated Samples	89
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.16 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	95.10 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.294 % of family members)
Environment Ontology (ENVO)	Unclassified (36.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.902 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.30% β-sheet: 0.00% Coil/Unstructured: 69.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04909	Amidohydro_2	76.47
PF00296	Bac_luciferase	6.86
PF02900	LigB	3.92
PF00067	p450	2.94
PF00120	Gln-synt_C	0.98
PF00324	AA_permease	0.98
PF01047	MarR	0.98
PF01218	Coprogen_oxidas	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	6.86
COG2124	Cytochrome P450	Defense mechanisms [V]	2.94
COG0408	Coproporphyrinogen-III oxidase HemH, oxygen-dependent	Coenzyme transport and metabolism [H]	0.98
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.98
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	0.98
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	0.98
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	55.88 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	26.47 %
Unclassified	root	N/A	16.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13.73 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	26.47 %
Unclassified	root	N/A	16.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.82 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	26.47 %
Unclassified	root	N/A	16.67 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	26.47 %
Unclassified	root	N/A	16.67 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	26.47 %
Unclassified	root	N/A	16.67 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3.92 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	26.47 %
Unclassified	root	N/A	16.67 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3.92 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10069260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	895	Open in IMG/M
3300001632\|JGI20235J16296_1004237	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300004268\|Ga0066398_10020192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1112	Open in IMG/M
3300005186\|Ga0066676_10690653	All Organisms → cellular organisms → Bacteria → Terrabacteria group	695	Open in IMG/M
3300005332\|Ga0066388_100767954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1561	Open in IMG/M
3300005435\|Ga0070714_102306856	All Organisms → cellular organisms → Bacteria → Terrabacteria group	523	Open in IMG/M
3300005535\|Ga0070684_100351370	Not Available	1356	Open in IMG/M
3300005841\|Ga0068863_100404168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1336	Open in IMG/M
3300006046\|Ga0066652_100699250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	965	Open in IMG/M
3300006163\|Ga0070715_10562508	Not Available	663	Open in IMG/M
3300006175\|Ga0070712_101754385	All Organisms → cellular organisms → Bacteria → Terrabacteria group	543	Open in IMG/M
3300006575\|Ga0074053_11857599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300006755\|Ga0079222_10857342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	753	Open in IMG/M
3300006800\|Ga0066660_10782831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	777	Open in IMG/M
3300006804\|Ga0079221_10293901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	949	Open in IMG/M
3300006806\|Ga0079220_10201620	Not Available	1149	Open in IMG/M
3300009137\|Ga0066709_102357007	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300009777\|Ga0105164_10201447	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300009792\|Ga0126374_10472896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	896	Open in IMG/M
3300010303\|Ga0134082_10452452	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300010359\|Ga0126376_13193261	All Organisms → cellular organisms → Bacteria → Terrabacteria group	507	Open in IMG/M
3300010360\|Ga0126372_10622441	Not Available	1040	Open in IMG/M
3300010360\|Ga0126372_10957692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	864	Open in IMG/M
3300010360\|Ga0126372_12252406	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300010361\|Ga0126378_10342475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1604	Open in IMG/M
3300010361\|Ga0126378_10498642	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300010362\|Ga0126377_12164819	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300010362\|Ga0126377_12698982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300010366\|Ga0126379_10218525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1849	Open in IMG/M
3300012206\|Ga0137380_11306521	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300012354\|Ga0137366_10862650	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300012363\|Ga0137390_11725932	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300012948\|Ga0126375_10550505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	871	Open in IMG/M
3300012960\|Ga0164301_11794906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	515	Open in IMG/M
3300012971\|Ga0126369_11114046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	878	Open in IMG/M
3300012971\|Ga0126369_11223610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	841	Open in IMG/M
3300012986\|Ga0164304_10525856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	869	Open in IMG/M
3300013306\|Ga0163162_11782687	All Organisms → cellular organisms → Bacteria → Terrabacteria group	704	Open in IMG/M
3300014969\|Ga0157376_10016454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5616	Open in IMG/M
3300016319\|Ga0182033_10769094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	847	Open in IMG/M
3300016357\|Ga0182032_11143865	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300016371\|Ga0182034_10622183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	913	Open in IMG/M
3300016371\|Ga0182034_10635132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	903	Open in IMG/M
3300016387\|Ga0182040_10175543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1553	Open in IMG/M
3300016445\|Ga0182038_11498961	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300017944\|Ga0187786_10527413	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300017961\|Ga0187778_10543033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	775	Open in IMG/M
3300017974\|Ga0187777_11430614	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300017975\|Ga0187782_10992752	Not Available	653	Open in IMG/M
3300018060\|Ga0187765_10712079	All Organisms → cellular organisms → Bacteria → Terrabacteria group	660	Open in IMG/M
3300019362\|Ga0173479_10893338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300021171\|Ga0210405_10341947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1181	Open in IMG/M
3300021171\|Ga0210405_10745706	Not Available	754	Open in IMG/M
3300021402\|Ga0210385_10072605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2347	Open in IMG/M
3300021405\|Ga0210387_10699947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	898	Open in IMG/M
3300021477\|Ga0210398_10587525	Not Available	905	Open in IMG/M
3300021477\|Ga0210398_11265365	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300021478\|Ga0210402_11791083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	540	Open in IMG/M
3300021560\|Ga0126371_10846261	Not Available	1060	Open in IMG/M
3300025900\|Ga0207710_10599050	All Organisms → cellular organisms → Bacteria → Terrabacteria group	576	Open in IMG/M
3300026078\|Ga0207702_11863236	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300026121\|Ga0207683_10908281	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300026550\|Ga0209474_10590802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	567	Open in IMG/M
3300027654\|Ga0209799_1002884	All Organisms → cellular organisms → Bacteria	3471	Open in IMG/M
3300027750\|Ga0209461_10095325	All Organisms → cellular organisms → Bacteria → Terrabacteria group	669	Open in IMG/M
3300027867\|Ga0209167_10632134	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300027889\|Ga0209380_10153968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1344	Open in IMG/M
3300027986\|Ga0209168_10445155	Not Available	628	Open in IMG/M
3300028828\|Ga0307312_10191525	Not Available	1311	Open in IMG/M
3300031543\|Ga0318516_10800983	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300031549\|Ga0318571_10202377	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300031564\|Ga0318573_10648770	All Organisms → cellular organisms → Bacteria → Terrabacteria group	568	Open in IMG/M
3300031572\|Ga0318515_10112788	Not Available	1432	Open in IMG/M
3300031573\|Ga0310915_10647604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	747	Open in IMG/M
3300031681\|Ga0318572_10863737	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300031747\|Ga0318502_10572031	Not Available	679	Open in IMG/M
3300031748\|Ga0318492_10433304	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300031779\|Ga0318566_10066404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1738	Open in IMG/M
3300031779\|Ga0318566_10465444	All Organisms → cellular organisms → Bacteria → Terrabacteria group	620	Open in IMG/M
3300031779\|Ga0318566_10554726	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031780\|Ga0318508_1208082	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031782\|Ga0318552_10238877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	921	Open in IMG/M
3300031792\|Ga0318529_10133401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1136	Open in IMG/M
3300031793\|Ga0318548_10151552	Not Available	1130	Open in IMG/M
3300031793\|Ga0318548_10496859	Not Available	596	Open in IMG/M
3300031799\|Ga0318565_10389976	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300031799\|Ga0318565_10469982	All Organisms → cellular organisms → Bacteria → Terrabacteria group	608	Open in IMG/M
3300031845\|Ga0318511_10303681	All Organisms → cellular organisms → Bacteria → Terrabacteria group	722	Open in IMG/M
3300031846\|Ga0318512_10688904	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300031859\|Ga0318527_10235384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	778	Open in IMG/M
3300031910\|Ga0306923_10176476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2440	Open in IMG/M
3300031947\|Ga0310909_10958519	All Organisms → cellular organisms → Bacteria → Terrabacteria group	700	Open in IMG/M
3300032055\|Ga0318575_10199956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1003	Open in IMG/M
3300032060\|Ga0318505_10096206	Not Available	1335	Open in IMG/M
3300032060\|Ga0318505_10574103	All Organisms → cellular organisms → Bacteria → Terrabacteria group	530	Open in IMG/M
3300032066\|Ga0318514_10741304	All Organisms → cellular organisms → Bacteria → Terrabacteria group	522	Open in IMG/M
3300032067\|Ga0318524_10152877	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300032068\|Ga0318553_10257678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	911	Open in IMG/M
3300032090\|Ga0318518_10451345	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300032261\|Ga0306920_102509346	Not Available	709	Open in IMG/M
3300032770\|Ga0335085_10238922	Not Available	2193	Open in IMG/M
3300032896\|Ga0335075_10798707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	885	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.14%
Host-Associated	Host-Associated	6.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.16%
Plants	Host-Associated → Plants	6.86%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.47%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.51%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300001632	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100692601	3300000597	Forest Soil	MASSEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAF
JGI20235J16296_10042372	3300001632	Forest Soil	MASSGPVYERLGAKILSLPDVIAQSVGFMGPVFSSAFVIPLV
Ga0066398_100201923	3300004268	Tropical Forest Soil	VPSQESYERLGPRRLRLPDVIAQSLGFMGPVFSAAFVIPLV
Ga0066676_106906531	3300005186	Soil	MKNFLYREAAMASTEPAYERLGAKVLSLPDVIAQSVGFIGPVFSS
Ga0066388_1007679541	3300005332	Tropical Forest Soil	MASSEQGYERLGAKLLSLPDVIAQSIGFIGPVFSSAFVIPL
Ga0070714_1023068561	3300005435	Agricultural Soil	MNTKEKPMASSESSDSGSYERLGAKLLSLPDVIAQSVGFLGP
Ga0070684_1003513701	3300005535	Corn Rhizosphere	MAKPDSYERLGAKRLSLPDVIAQSVGFMGPVFSSAFVIPLV
Ga0068863_1004041682	3300005841	Switchgrass Rhizosphere	MASSEQGYERLGAKLLSLPDVIAQSIGFIGPVFSSAFVIPLVVGV
Ga0066652_1006992501	3300006046	Soil	MASSEQGYERLGAKLLSLPDVIAQSIGFIGPVFSSAFV
Ga0070715_105625081	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MAKHEAGYERLGAKVLSLPDVIAQSVGFMGPVFSSAFVI
Ga0070712_1017543852	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MASSESSDSGSYERLGAKLLSLPDVIAQSVGFLGP
Ga0074053_118575991	3300006575	Soil	VAEDKELGYERLGAPKLSLVDVVAQSVGFMGPVFSAAFLI
Ga0079222_108573421	3300006755	Agricultural Soil	MASTEPVYERLGAKVLSLPDVIAQSVGFIGPVFSSAFVIPLV
Ga0066660_107828311	3300006800	Soil	MASSEPAYESLGAKVLSLPDVIAQSVGLIGQVFYSAFVI
Ga0079221_102939011	3300006804	Agricultural Soil	MASSESSDSGSYERLGAKLLSLPDVIAQSVGFLGPVFSSAFVIPLV
Ga0079220_102016201	3300006806	Agricultural Soil	MAGSRKAYERLGAKVLSLPDVVAQSVGFMGPVFSSAFV
Ga0066709_1023570072	3300009137	Grasslands Soil	MKNFLYREAAMASTEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAFVI
Ga0105164_102014472	3300009777	Wastewater	VAESKGFGYERLGAKTLSLVDVIAQSVGFIGPVFSAAFLI
Ga0126374_104728961	3300009792	Tropical Forest Soil	MAKSESGYERLGAKVLSLPDVVAQSVGFMGPVFSS
Ga0134082_104524521	3300010303	Grasslands Soil	MNMKEKPMASSEQGYERLGAKLLSLPDVIAQSIGFIGPVFSSAFVIPLVVGVISAS
Ga0126376_131932611	3300010359	Tropical Forest Soil	MRSKEQLMAGSDSGYERLGAKLLSLPDVVAQSVGFMG
Ga0126372_106224411	3300010360	Tropical Forest Soil	VPSDSDSQTYERLGPKRLRLADVIAQSVGFIGPVFS
Ga0126372_109576921	3300010360	Tropical Forest Soil	MASSEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAFV
Ga0126372_122524062	3300010360	Tropical Forest Soil	MASSEQGYERLGAKLLSLPDVIAQSVGFLGPVFSSAFVI
Ga0126378_103424751	3300010361	Tropical Forest Soil	MKEKPMASSESHDSGSYERLGAKLLSLPDVIAQSVGFLGPVFSS
Ga0126378_104986421	3300010361	Tropical Forest Soil	MRFITHFRLNMKEKPMASSESYDSGSYERLGAKLLSLPDVIAQSVGFLGPVFSSAFVIP
Ga0126377_121648191	3300010362	Tropical Forest Soil	MASSEQGYERLGAKLLSLPDVIAQSIGFIGPVFSSAFVIPLV
Ga0126377_126989821	3300010362	Tropical Forest Soil	VAEQQNEIGYERLGEAKLTLVDVVSQSVGFVGPVFSSAFVIPLIV
Ga0126379_102185251	3300010366	Tropical Forest Soil	MMASSEPAYERLGAKVLSLPDVIAQSVGFIGPVFS
Ga0137380_113065211	3300012206	Vadose Zone Soil	MKEETMGSSEPVYERLGAKVLSRPDVIAQSVGFMGPVFASAFVIPLVVGV
Ga0137366_108626501	3300012354	Vadose Zone Soil	MASSEQAMASSEQGYERLGAKLLSLPDVIAQSIGFIGLVFSSAFVIPLVVGVISASGKGG
Ga0137390_117259321	3300012363	Vadose Zone Soil	MPSSESAYERLGAKLLSLPDVIAQSVGFMGPVFSSAFVIPLV
Ga0126375_105505051	3300012948	Tropical Forest Soil	MASSEQGYERLGAKLLSLPDVIAQSIGFIGPVFSSAF
Ga0164301_117949062	3300012960	Soil	MAGSRKAYERLGAKVLSLPDVVAQSVGFMGPVFSSAFVIPLVI
Ga0126369_111140461	3300012971	Tropical Forest Soil	MMASSEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAFVIP
Ga0126369_112236101	3300012971	Tropical Forest Soil	MASSEQGYEQGYERLGAKLLSLPDVIAQSVGFLGPVFSSAFVIPLVV
Ga0164304_105258561	3300012986	Soil	MKEKPMASSESSDSGSYERLGAKLLSLPDVIAQSVGFLGP
Ga0163162_117826871	3300013306	Switchgrass Rhizosphere	MNTKEKPMASSESSDSGSYERLGAKLLSLPDVIAQSVGFLGPVF
Ga0157376_100164541	3300014969	Miscanthus Rhizosphere	MKEEPMASSESSDSGSYERLGAKLLSLPDVIAQSVGF
Ga0182033_107690942	3300016319	Soil	MASTEPVYERLGAKVLSLPDVIAQSVGFMGPVFSSAFVI
Ga0182032_111438651	3300016357	Soil	MAGSEPAYERLGAKVLSLPDVIAQSVGFMGPVFSSAFVIP
Ga0182034_106221832	3300016371	Soil	MASSESGYERLGAKILSLPDVIAQSVGFLGPVFSSAFVI
Ga0182034_106351321	3300016371	Soil	MAGSEPAYERLGAKVLSLPDVIAQSVGFMGPVFSSAF
Ga0182040_101755431	3300016387	Soil	MASSESHDSGSYERLGPKLLSLPDVIAQSIGFLGPVFSSAFVIPLVVGVISASGKGGG
Ga0182038_114989611	3300016445	Soil	MANSEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAFVIPL
Ga0187786_105274131	3300017944	Tropical Peatland	MASSDQGYERLGAKLLSLPDVIAQSIGFIGPVFSSAFVIPL
Ga0187778_105430331	3300017961	Tropical Peatland	MASSEPGYERLGAKILALPDVIAQSVGFIGPVFSSAF
Ga0187777_114306142	3300017974	Tropical Peatland	MASSEPGYERLGAKILSLPDVIAQSVGFIGPVFSSAFVIPLV
Ga0187782_109927521	3300017975	Tropical Peatland	MAKSEYERLGAKVLSLPDVIAQSVGFMGPVFSSAF
Ga0187765_107120792	3300018060	Tropical Peatland	MASSESYERLGAKLLSLPDVIAQSIGFLGPVFSSA
Ga0173479_108933382	3300019362	Soil	MASSEQGYERLGAKLLSLPDVIAQSIGFIGPVFPRPS
Ga0210405_103419473	3300021171	Soil	MAKHESAPAYERLGAKVLTLPDVIAQSVGFMGPVFSSAFVIPLV
Ga0210405_107457061	3300021171	Soil	MAKHEQAYERLGAKVLTLPDVIAQSVGFMGPVFSSAFVIPLVV
Ga0210385_100726051	3300021402	Soil	MADSERGYERLGAKVLSLPDVIAQSVGFMGPVFSSAFV
Ga0210387_106999471	3300021405	Soil	MASSEPQYERLGAKILSLPDVIAQSVGFIGPVFSSAFV
Ga0210398_105875251	3300021477	Soil	MAKSDPPYERLGAKVLSLPDVIAQSVGFMGPVFSAA
Ga0210398_112653651	3300021477	Soil	MASSEPAYERLGAKILSLPDVIAQSVGFMGPVFSSAFVI
Ga0210402_117910832	3300021478	Soil	MAKHESAPAYERLGAKVLTLPDVIAQSVGFMGPVF
Ga0126371_108462612	3300021560	Tropical Forest Soil	VPSDSESPTYERLGPKRLRLADVIAQSVGFIGPVFS
Ga0207710_105990502	3300025900	Switchgrass Rhizosphere	MASSESSDSGSYERLGAKLLSLPDVIAQSVGFLGPVF
Ga0207702_118632362	3300026078	Corn Rhizosphere	MAVSEPQYERLGAKILSLPDVIAQSVGFIGPVFSSAFVIPLVV
Ga0207683_109082811	3300026121	Miscanthus Rhizosphere	VAQRTEETGYERLGAPKLSLVDVVAQSVGFMGPVFSAAFLIP
Ga0209474_105908022	3300026550	Soil	MAKHEQAYERLGAKVLTLPDVIAQSVGFMGPVFASAFVIPLV
Ga0209799_10028846	3300027654	Tropical Forest Soil	VPSQESYERLGPRRLRLPDVIAQSLGFMGPVFSAAFVLPLVV
Ga0209461_100953252	3300027750	Agave	MASSEQGYERLGAKLLSLPDVIAQSIGFIGPVFSSAFVIPLVVGVISAS
Ga0209167_106321342	3300027867	Surface Soil	MANSEPAYERLGAKVLALPDVIAQSVGFMGPVFSSAF
Ga0209380_101539682	3300027889	Soil	MASSEPAYERLGAKILSLPDVIAQSVGFMGPVFSSAFVIPLVV
Ga0209168_104451551	3300027986	Surface Soil	MAKSEYERLGAKVLSLPDVIAQSVGFIGPVFSSAFVIPLV
Ga0307312_101915252	3300028828	Soil	MASSEPAYERLGAKLLSLPDVVAQSIGFIGPVFSSAFVIPLVVG
Ga0318516_108009832	3300031543	Soil	MASSEPAYERLGAKVLSLPDVIAQSVGFMGPVFSS
Ga0318571_102023771	3300031549	Soil	MASTEPVYERLGAKVLSLPDVIAQSVGFIGPVFSAAFVIP
Ga0318573_106487701	3300031564	Soil	MASSEPAYERLGAKVLSLPDVIAQSVGFIGPVFSS
Ga0318515_101127881	3300031572	Soil	MASTEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAFV
Ga0310915_106476041	3300031573	Soil	MAKSEPGYERLGAKVLALPDVIAQSVGFMGPVFSSAF
Ga0318572_108637372	3300031681	Soil	MASSEPGYERLGAKILSLPDVIAQSVGFIGPVFSSA
Ga0318502_105720312	3300031747	Soil	MANTEPAYERLGAKVLHLPDVIAQSVGFMGPVFSSAFVIPLVV
Ga0318492_104333042	3300031748	Soil	MASSESSDSGSYERLGAKLLSLPDVIAQSVGFLGPVFSSAFVIPLVV
Ga0318566_100664043	3300031779	Soil	MASSESHDSGSYERLGPKLLSLPDVIAQSIGFLGPVFS
Ga0318566_104654442	3300031779	Soil	VASSESYERLGAKLLSLPDVIAQSAGFLGPVFSSA
Ga0318566_105547262	3300031779	Soil	MASSEPAYERLGAKVLSLPDVIAQSVGFMGPVFSSAFVIPLV
Ga0318508_12080822	3300031780	Soil	MAKSEPGYERLGAKVLALPDVIAQSVGFMGPVFSS
Ga0318552_102388772	3300031782	Soil	MANTEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAFVIPLITPT
Ga0318529_101334012	3300031792	Soil	MASSESHDSGSYERLGPKLLSLPDVIAQSIGFLGPVFSSAFVIPLVVGVI
Ga0318548_101515522	3300031793	Soil	MASTEPAYERLGAKVLSLPDVIAQSVGFIGPVFSS
Ga0318548_104968592	3300031793	Soil	MASSESHDSGSYERLGPKLLSLPDVIAQSIGFLGPVFSSAFVIPL
Ga0318565_103899761	3300031799	Soil	MASSESHDSGSYERLGPKLLSLPDVIAQSIGFLGPVFSSAFVIPLVVGVISASG
Ga0318565_104699821	3300031799	Soil	MASSESYDSGSYERLGAKLLSLPDVIAQSVGFLGP
Ga0318511_103036812	3300031845	Soil	MASSESHDSGSYERLGPKLLSLPDVIAQSIGFLGPVFSSAF
Ga0318512_106889042	3300031846	Soil	MAKSERAYERLGAKVLSLPDVVAQSVGFMGPVFSSA
Ga0318527_102353841	3300031859	Soil	MANTEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAFV
Ga0306923_101764764	3300031910	Soil	MASSESYDSGSYERLGAKLLSLPDVIAQSVGFLGPVF
Ga0310909_109585192	3300031947	Soil	MANTEPAYERLGAKVLSLPVVIAQSVGFIGPVFSSAFV
Ga0318575_101999561	3300032055	Soil	MAGSEPAYERLGAKVLSLPDVIAQSVGFMGPVFSSAFVIPLV
Ga0318505_100962062	3300032060	Soil	MASTEPVYERLGAKVLSLPDVIAQSVGFIGPVFSSAFVIPLVI
Ga0318505_105741031	3300032060	Soil	MASTEPVYERLGAKVLSLPDVIAQSVGFIGPVFSSAFVI
Ga0318514_107413041	3300032066	Soil	MASSESHDSGSYERLGPKLLSLPDVIAQSIGFLGPVF
Ga0318524_101528771	3300032067	Soil	MTSTEPAYERLGAKVLSLPDVIAQSVGFIGPVFSSAFVIPL
Ga0318553_102576781	3300032068	Soil	MASSEPAYERLGAKVLSLPDVIAQSVGFMGPVFSSAFVIPL
Ga0318518_104513451	3300032090	Soil	MASSEPAYERLGAKVLSLPDVIAQSVGFMGPVFSSA
Ga0306920_1025093461	3300032261	Soil	VSSQDNPSYERLGAKRLRLVDVLAQSVGFVGPVFSSAFVIPLV
Ga0335085_102389224	3300032770	Soil	MAGSDSGYERLGAKLLSLPDVIAQSVGFMGPVFSSAFVIPLV
Ga0335075_107987071	3300032896	Soil	MPDSERGYERLGAKVLSLPDVIAQSVGFMGPVFSSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101947

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences