NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F065974

Metagenome / Metatranscriptome Family F065974

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F065974
Family Type Metagenome / Metatranscriptome
Number of Sequences 127
Average Sequence Length 54 residues
Representative Sequence PHDDIIEQTLRVKPLLKAAATYVDLPELGPDPFHVAVDRMVTLVNRHLPA
Number of Associated Samples 107
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 6.30 %
% of genes from short scaffolds (< 2000 bps) 6.30 %
Associated GOLD sequencing projects 99
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.063 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.110 % of family members)
Environment Ontology (ENVO) Unclassified
(25.197 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.417 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.33%    β-sheet: 0.00%    Coil/Unstructured: 66.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 127 Family Scaffolds
PF02423OCD_Mu_crystall 13.39
PF01906YbjQ_1 10.24
PF04116FA_hydroxylase 7.87
PF07080DUF1348 7.09
PF00144Beta-lactamase 3.15
PF04993TfoX_N 1.57
PF05977MFS_3 1.57
PF01738DLH 0.79
PF10023Aminopep 0.79
PF00445Ribonuclease_T2 0.79
PF13602ADH_zinc_N_2 0.79
PF12695Abhydrolase_5 0.79
PF01636APH 0.79
PF13241NAD_binding_7 0.79
PF13520AA_permease_2 0.79
PF14052Caps_assemb_Wzi 0.79
PF07690MFS_1 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 127 Family Scaffolds
COG2423Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin familyAmino acid transport and metabolism [E] 13.39
COG0393Uncharacterized pentameric protein YbjQ, UPF0145 familyFunction unknown [S] 10.24
COG3000Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamilyLipid transport and metabolism [I] 7.87
COG3558Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamilyFunction unknown [S] 7.09
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 3.15
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 3.15
COG2367Beta-lactamase class ADefense mechanisms [V] 3.15
COG2814Predicted arabinose efflux permease AraJ, MFS familyCarbohydrate transport and metabolism [G] 1.57
COG3070Transcriptional regulator of competence genes, TfoX/Sxy familyTranscription [K] 1.57
COG3719Ribonuclease ITranslation, ribosomal structure and biogenesis [J] 0.79


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A96.06 %
All OrganismsrootAll Organisms3.94 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005541|Ga0070733_10319981Not Available1026Open in IMG/M
3300005712|Ga0070764_10320611All Organisms → cellular organisms → Bacteria899Open in IMG/M
3300006176|Ga0070765_100429364All Organisms → cellular organisms → Bacteria → Proteobacteria1236Open in IMG/M
3300006638|Ga0075522_10343355Not Available715Open in IMG/M
3300010379|Ga0136449_100002294All Organisms → cellular organisms → Bacteria → Proteobacteria57767Open in IMG/M
3300020582|Ga0210395_10448456Not Available971Open in IMG/M
3300021479|Ga0210410_10512166Not Available1071Open in IMG/M
3300031708|Ga0310686_104596354Not Available905Open in IMG/M
3300031708|Ga0310686_119504246All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia → Massilia sp. H61383Open in IMG/M
3300032160|Ga0311301_10012060All Organisms → cellular organisms → Bacteria → Proteobacteria27043Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.11%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa12.60%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.02%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.09%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog6.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.51%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.51%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil4.72%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.15%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen2.36%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.57%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.57%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.57%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.57%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.57%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.57%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.57%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.57%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.57%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated1.57%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.57%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.79%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.79%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.79%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.79%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.79%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.79%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.79%
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza0.79%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001632Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005944Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009635Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10EnvironmentalOpen in IMG/M
3300009709Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010869Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014638Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300020061Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027297Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)EnvironmentalOpen in IMG/M
3300027439Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027504Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028813Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3EnvironmentalOpen in IMG/M
3300028866Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029939I_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029945I_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300030002II_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030020II_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030646Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2EnvironmentalOpen in IMG/M
3300030739Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3EnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300031027Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031239Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaGHost-AssociatedOpen in IMG/M
3300031249Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaGHost-AssociatedOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300033180Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EMHost-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20235J16296_100387613300001632Forest SoilPHDDIAEQTARVKLLLKPDAMYVDLPDLGLDPFFAAPERMVDLVNKYVPA*
JGIcombinedJ26739_10096526423300002245Forest SoilKSLKTPLTVFAPHDDIIEQTSRIKTLLKADASYVDLPELGQDPFHVAVDRMVTLVNRHLPL*
JGIcombinedJ51221_1037280623300003505Forest SoilRVKLLLKPDAVYVDLPDLGLDPFFAAPERMVDLINKYVPA*
Ga0062384_10033138213300004082Bog Forest SoilRTPLVVLAPHDDILEQTQRVKRLLKSDAQYVDLPDLKLDLFNNSLDRMMTLMHRYLPA*
Ga0062384_10048599713300004082Bog Forest SoilEQTARVKLLLKPDAVYVDLPDLGLDPFFAAPERMVELINKYVPA*
Ga0062387_10147059013300004091Bog Forest SoilQTQRVKPLLKSSATYIDLPEFGLDLFALATDRMITLVNRQLPAH*
Ga0062386_10175050613300004152Bog Forest SoilKTPLTVFAPHDDIIEQTQRVKPLLKATSNYVDLPDLGLDLFHRALDRIVILLNRHLPPQ*
Ga0062388_10052019923300004635Bog Forest SoilKKLKSLKAPLTVFAPHDDIIEQTSRIKPLLKPDASYVDLPELGQDPFHIAVDRMVTLVNRHLPL*
Ga0070730_1079522223300005537Surface SoilPHDEIIEQTQRVRPMLKPMDSYVDLPDLSVDLFHAAADRMAELIDRHLPA*
Ga0070733_1011272933300005541Surface SoilGYPIEKKLKSLKPPLTVFAPHDDIIEQTSRIKPLLKADASYVDLPELGQDPFHAAVDRMVTLVNRHLPL*
Ga0070733_1031998143300005541Surface SoilPHDDIIEQTLRVKPLLKASAAYVDLPDLGLDLFHSATDRMVALVNRHAPAQ*
Ga0070762_1085283323300005602SoilDIIEQTQRVKPLLKSTASYIDLPDLGLDLFHRALDRMVILLNRHLPP*
Ga0070763_1087361713300005610SoilRVRPMLKADAAYLDLPDLGLDLFHTGLDRMAELINRYLPA*
Ga0070764_1032061113300005712SoilLRVKPLLKPSAAYVDLPDLGLDLFHAATDRMVSLVNRHAPAH*
Ga0066788_1017434523300005944SoilVPLTIFAPHDDIVEQTLRGKPLLKAGGSYVDLPELGQDPFHLAVERMVTLVNRHLPP*
Ga0066789_1034166923300005994SoilLLKGDATYVDLPELGQDLFHAAVDRMATLVNRHSPA*
Ga0075015_10079679013300006102WatershedsTMRVKPLLKGSATYVDLPDLGLDLFHRAKDRMVALVNRHLQA*
Ga0070765_10042936443300006176SoilPLTVFAPHDDIIDQTLRVKPLLKPSAAYVDLPDLGLDLFHAATDRMVSLVNRHAPAQ*
Ga0070765_10084214713300006176SoilQTQRVKPILKADAVYVDLPDLSVDLFHSAPDRMAELINRHLAP*
Ga0075522_1034335513300006638Arctic Peat SoilDDIIEQTQRVKPLLKASATYVDLPDLGLDLFHAATERMVTLVNRHAPAH*
Ga0075521_1050208223300006642Arctic Peat SoilSLKTPLTVFAPHDDIVEQTLRVKAMLKESAHYVDLPELGQDPFQVAVERMVTLVNRHLPP
Ga0073928_1031462713300006893Iron-Sulfur Acid SpringLLLKPDAVYVDLPDLGLDPFFTAAERMVDLINKYLPA*
Ga0099829_1015169333300009038Vadose Zone SoilLAPHDEIIEQTQRVKPLLKPGATFVDLPELGQDPFNVALDRMVTLVNRHLPP*
Ga0099830_1101591113300009088Vadose Zone SoilKPLLKPGATFVDLPELGQDPFNVALDRMVTLVNRHLPP*
Ga0116117_119067323300009635PeatlandLKSLRSPLTVFAPHDELMEQTLRVRPMLKADAAYVDLPDLGVDLFHTATERMAELINRYLPA*
Ga0116227_1046623013300009709Host-AssociatedKLKGLKAPLVVLAPHDEIIEQTVRVKPMLKGSGVYVDLPELGQDPFHKNLDRMIELVERYTG*
Ga0116227_1088313113300009709Host-AssociatedKLKSLRPPLTVFAPHDEILEQTQRVRPLLKADAAYLDLPDLGVDLFHAAPDRMAELINRYLPA*
Ga0074045_1075183813300010341Bog Forest SoilKLKGLKIPLTVFATHDELIEQTQRVKPLLKTGDVYLDLPDLGADLFHAATDRMAELLDRHLPA*
Ga0074044_1052144123300010343Bog Forest SoilAPHDDIIEQTQRVEPLLKSAANYVDLPDLGQDLFHRALDRMVMLLNRHLPP*
Ga0136449_100002294273300010379Peatlands SoilVFAPHDELIEQTERVKPLLKSGDVYVDLPDLGADLFHSATDRMAELLNRHLPA*
Ga0126359_122531023300010869Boreal Forest SoilLRVKPLLKGNATFVDLPDLGLDLFHAATDRMISLVNRHLPAT*
Ga0126361_1131657223300010876Boreal Forest SoilDKKLNSLKTPLTVLAPHDDIIEQTLRVKPLLKGSATLVDLPDLGLDLFHAATDRMIALVNRHLPVER*
Ga0137391_1138434223300011270Vadose Zone SoilAPHDDIIEQTLRVKALLKPGATFVDLPELGQDPFNVALDRMVTLVNRHLPP*
Ga0137399_1152714813300012203Vadose Zone SoilKSLKAPLTVFAPHDEIIEQTLRVKPLLKPGATFVDLPEMGQDPFHAGLDRMVTLVNRHLPP*
Ga0137397_1035632013300012685Vadose Zone SoilKSLKAPLTVFAPHDDIIEQTLRVKPLLKPGATFVDLPELGQDPFNAALDRMVALLNRHL*
Ga0137396_1116220423300012918Vadose Zone SoilVFAPHDDIIEQTLRVKPLLKPGATFVDLPELGQDPFNAALDRMVALLNRHL*
Ga0137419_1018759113300012925Vadose Zone SoilQTQRVKPLLKPGATFVDLPELGQDPFNVALDRMVTLVNRHLPP*
Ga0137416_1119644523300012927Vadose Zone SoilHDDIIEQTTRVKPLLKAGSTYVDLPELSHDPFHAAIDRMVTLVNRHLPP*
Ga0137404_1231517213300012929Vadose Zone SoilDNNLKSLNSPLTVLAPHDDIIQHTLPVKPLFKGGATYVDLPDLGPDLFQSATDRMVSLVNRYLPAL*
Ga0182016_1051623513300014493BogLMEQTLRVRPMLKADAAYVDLPDLGVDLFHTATERMAELINRYLPA*
Ga0182024_1229079823300014501PermafrostYPIEKKLKSLKTPLTVFAPHDDIIEQTLRVKPLLKNGATYLDLPELSHDPFHVAIERMVTLVNRHLPP*
Ga0181536_1015799813300014638BogLRPPLTVFAPHDELMEQTLRVKPMLKADAAYVDLPDLGLDLFHTATERMAELINRYLPA*
Ga0182030_1097596323300014838BogDIIEQTLRVKPLLKTGATYLDLPELSHDPFHVAIERMVTLVNRHLPP*
Ga0137418_1026533323300015241Vadose Zone SoilQTQRVKPLLKPGATFVDLPELGQDPFNVALDRMVTLVNRHLPAQ*
Ga0137403_1050197123300015264Vadose Zone SoilRAACGYPIEKKLKSLKAPLTVFAPHDEIIEQTQRVKPLLKPGATFVDLPELGQDPFNVALDRMVTLVNRHLPP*
Ga0187801_1051414123300017933Freshwater SedimentPLTVLAPHDDIIEQTLRVKPMLKADDAYVDLPDLGVDLFHLAADRMAELINRHLPA
Ga0187875_1077871413300018035PeatlandQRVRPLLKADAAYVDLPDLGIDLFHTATDRMAELINRYLPG
Ga0187890_1053125323300018044PeatlandYPIERKLKALKVPLVVFAPHDDIYEQTSRVKPMLKPDAVYIDLPTIGQDPFHIAVDRMADLVQRYLPVE
Ga0187784_1148742623300018062Tropical PeatlandVFAPHDDIVEQTTRVKPLLKPEDIYVDLPDLGLDIVQLAADRMAELVNQYLPSW
Ga0193729_117981913300019887SoilIDKNLKSLKSPLTVFAPHDDIIQQTLRVKPLLQGSATYVDLPDLGLDLFQSATDRMVSLVNRHLPAH
Ga0193726_130897323300020021SoilIEKKLKSLRSPLVVLAPHDDIIEQTQRVKPLLKADAQYVDLPDLKLDLFNSSVDRMLTLLNRYLPA
Ga0193716_127281513300020061SoilLRVKPLLKSSAAFVDLPDLGLDLFHTQTDRMVGLINRHLPAQ
Ga0179592_1021592913300020199Vadose Zone SoilEQTQRVKPLLKADAQYVDLPDLSQDPFQFAVDRMVALVNRHLPP
Ga0210407_1063570013300020579SoilEQTLRVKPLLKGSATFVDLPDLGLDLFHAATDRMIALVNRHLPAH
Ga0210403_1019918733300020580SoilPLTVFAPHDDIIEQTLRVKPLLKTGATFVDLPELGQDPFNVALDRMVTLVNRHLPP
Ga0210403_1025008313300020580SoilLTVFAPHDDIVEQTERVKPLLKPGANFVDLPEFGQDPFNVALDRMVALVNRHLPP
Ga0210399_1065208513300020581SoilLTVLAPHDDIIEQTQRVKPLLRSSATFVDLPDLGLDLFHAQTDRMIALVNRHLPAH
Ga0210395_1044845633300020582SoilACGYAIDKKLKGLKSPLTVFAPHDDIIEQTLRVKPLLKASATYVDLPDLGLDLFQAATDRMVSLVNRHAPAH
Ga0210400_1051827823300021170SoilKSLKAPLTVFAPHDDIIEQTLRVKPLLKPGATFVDLPELGQDPFNVALDRMVTLVNRHLP
Ga0210396_1023252813300021180SoilKNLNTPLTVFAPHDDIIEQTQRVKPLLKSTAYYVDLPDLGQDLFHRALDRMVMLLNRHLP
Ga0210393_1081306813300021401SoilTPLTVLAPHDDIIEQTLRVKPLLKGSATLVDLPDLGLDLFHAATDRMISLVNRHLPAQ
Ga0210397_1128550923300021403SoilNLNTPLTVFAPHDDIIEQTQRVKPLLKSTAYYVDLPDLGQDLFHRALDRMVMLLNRHLPP
Ga0210397_1161555913300021403SoilAPHDDIIEQTQRVKPLLKANATYVDLPDLGLDLFHAATDRMVTLVNRHAPAH
Ga0210389_1016950613300021404SoilKKLKSLKTPLTVFAPHDDIIEQTVRVKPLLKPSATYVDLPDLGLDLFSAAIDRMAALLNRHLPAN
Ga0210387_1142960323300021405SoilLLKSTANYVDLPDLGQDLFHRALDRMVMLLNRHLPP
Ga0210387_1177269113300021405SoilVFAPHDEIIEQTLRVKPLLKPGATFVDLPEMGQDPFHADLDRMVTLVNRHLPP
Ga0210386_1102814223300021406SoilSSYPIERKLKTLRTPLTVFAPHDELIEQTQRVKPMLKADAVYVDLPDLSVDLFHSTIDRMAELINRHLTP
Ga0210394_1044911813300021420SoilDKNLKNLNSPLTVFAPHDDIIEQTQRVKPLLKSTANYVDLPDLGQDLFHRALDRMVMLLNRHLPP
Ga0210394_1054330513300021420SoilPHDDIIEQTQRVKPLLKTTANYVDLPDLGLDLFHRALDRMVTLLNRYLPP
Ga0210390_1056278823300021474SoilKSLRSPLTVFAPHDDIMEQTQRVRPMLKADAAYLDLPDLGLDLFHTGLDRMAELINRYLP
Ga0210410_1004049073300021479SoilKLKSLKTPLTVLAPHDDIIEQTLRVKPLLKGSATFVDLPDLGLDLFHAATDRMIALVNRHLPAH
Ga0210410_1022777513300021479SoilWVKPLLQATADYVDLPDLGVDLFHRALDRMVTLIDRHLPPQ
Ga0210410_1033571713300021479SoilEKKLKSLKAPLTVFAPHDDIIEQTLRVKPLLKPGATFVDLPELGQDPFFAALDRMVTLVNRHLPP
Ga0210410_1051216633300021479SoilFAPHDDIIEQTLRLKPLLKPSATYVDLPDLGLDLFSAATDRMAALLNRHLPAN
Ga0210409_1072536313300021559SoilAACGYSVDKNLKDLAAPLTVFAPHDDIIEQTQRVKPLLKSTASYIDLPDLGLDLFHRALDRMVILLNRHLPP
Ga0210409_1150339223300021559SoilAACGYAIDKKLKSLKTPLTVFAPHDDIIEQTLRVKPLLKPSATYVDLPDLGLDLFSAATDRMAALLNRHLPAN
Ga0179587_1004066913300026557Vadose Zone SoilIEQTQRVKPLLKADAQYVDLPDLSQDPFQFAVDRMVALVNRHLPP
Ga0179587_1020119933300026557Vadose Zone SoilIEQTLRVKPLLKPGATFVDLPEMGQDPFHAGLDRMVTLVNRHLPP
Ga0208241_102144713300027297Forest SoilLLKANATYVDLPDLGLDLFHAATDRMVTLVNRHAPAH
Ga0209332_106392223300027439Forest SoilLTVFAPHDDLIEQTLRVKPLLKAGAKFVDLPEFGQDPFNVALDRMVALVNRHLPP
Ga0209114_100093213300027504Forest SoilDDIIEQTQRVKPLLKSSATYIDLPEFGLDLFALATDRMITLVNRQLPAH
Ga0209735_114396413300027562Forest SoilKPLKPGASYVDLPELGFDPFHLAVDRMVNLVNRHLP
Ga0209736_119090413300027660Forest SoilVKPLLRSSATFVDLPDLGLDLFHAQTDRMIALVNRHLPAH
Ga0209446_117723513300027698Bog Forest SoilLLKSTANYVDLPDLGPDLFHRALDRMVILLNRHLPP
Ga0209166_1052398123300027857Surface SoilPHDEIIEQTQRVRPMLKPMDSYVDLPDLSVDLFHAAADRMAELIDRHLPA
Ga0209169_1052967523300027879SoilLRVKPLLKPSAAYVDLPDLGLDLFHAATDRMVSLVNRHAPAH
Ga0209624_1009175613300027895Forest SoilRVKLLLKPDAVYVDLPDLGLDPFFAAPERMVDLINKYVPA
Ga0302157_1031053923300028813BogSPLTVFAPHDDIIQQTLRVKPLLKTGTSYVDLPELTHDPFHVAIDRMITLINRHLTP
Ga0302157_1045627723300028813BogDLLEQTQRVRPLLKADAAYVDLPDLGIDLFHTATDRMAELINRYLPG
Ga0302278_1035929723300028866BogPIDKKLKSLKAPLTVFAPHDDIIEQTLRVKPLLKSGANYVDLPELGHDPFHVALDRMVALVNRHLPP
Ga0308309_1079518913300028906SoilPHDDIIDQTLRVKPLLKPSAAYVDLPDLGLDLFHAATDRMVSLVNRHAPAQ
Ga0311368_1028471823300029882PalsaTIRVKPLLKPENAYVDLPGIAQDPFHVAIDRMVELVNRYLPS
Ga0311368_1039397023300029882PalsaLRPDAVYVDLPDVGLDPFFAAPDRMAELVNKYLPA
Ga0311329_1104563813300029907BogDEMIAQTARVKPLLKLDSAYVDLPTIGQDPFHVALDLMVELVNRYLPS
Ga0311363_1046650713300029922FenLRTPLTVFAPHDDIIEQTQRAMPLIRADAKYVDLPDLSVDLFRVAVDRMAELINRNLPL
Ga0311363_1144184913300029922FenRSPLTVFAPHDELMEQTLRVRPMLKADAAYVDLPDLGVDLFHTATERMAELINRYLPA
Ga0311328_1030848423300029939BogTVKVPLTVFAPHDDMIEQTARVKPLLKPDSAYVDLPAIAQDPFHVAIDRMVELVNRYLPS
Ga0311340_1125378423300029943PalsaPHDDIIEQTLRVKPLLKAGANYIDLPELSHDPFQVAIDRMVTLVNRHLPA
Ga0311330_1063760523300029945BogPHDDLMEQTQRVRPMLKADSAYVDLPDLGIDLFHTATERMAELINRYLPA
Ga0311350_1175632113300030002FenTQRVKPLLKPGATFVDLPELTQDPFDVWVDRMVTLVNRHLPP
Ga0311338_1017346613300030007PalsaTLRVKPLLKAGATYVDLPELGHDPFHVSLDRMVALVNRHLPP
Ga0311344_1028832213300030020BogLTVFAPHDDIIEQTLRVKPLLKSGANYVDLPELGHDPFHVALDRMVALVNRHLPP
Ga0311353_1008386653300030399PalsaAVDKKLKGLKSPLTVFAPHDEIIEQTLRVKPLLKASATYVDLPDLGLDLFHAATDRMVALVNRHAPAQ
Ga0311372_1181477323300030520PalsaAGNYPLEKKLKTVKVPLTVFAPHDDIIEQTARVKSLLKPDSVYVDLPAIAQDPFHVTLDRMAELVNRYLPA
Ga0311355_1017876033300030580PalsaKLKSLKAPLTVLAPHDDIIEQTLRVKPLLKAGANYIDLPELSHDPFQVAIDRMVTLVNRHLPA
Ga0311354_1158954323300030618PalsaPLLKAGGSYVDLPELTHDPFHVALDRMIALVNRHLPP
Ga0302316_1017384423300030646PalsaKKLKGLKSPLTVFAPHDEIIEQTLRVKPLLKASATYVDLPDLGLDLFHAATDRMVALVNRHAPAQ
Ga0302311_1029583733300030739PalsaAACGYAVDKKLKGLKSPLTVFAPHDEIIEQTLRVKPLLKASATYVDLPDLGLDLFHAATDRMVALVNRHAPAQ
Ga0302314_1072008233300030906PalsaRAACGYPIEKKLKSLKVPLTVFAPHDDIIEQTQRVKPLLKGGAAYVDLPELSQDPFHAAVDRMVTLVNRHLPP
Ga0302308_1063901123300031027PalsaKKLKSLKAPLTVFAPHDDIIEQTQRVKPLLKGGAAYVDLPELSQDPFHAAVDRMVTLVNRHLPP
Ga0265760_1029088113300031090SoilIEKKLKSLKTPLTVFAPHDDIIEQTSRIKPLLKPDASYVDLPELGQDPFHATVDRMVTLVNRHLPL
Ga0170823_1399297713300031128Forest SoilKLKSLKTPLTVFAPHDDIIEQTLRVKPLLKPSATYVDLPDLKLDLFSAAIDRMVALLNRHLPAN
Ga0170824_10107898813300031231Forest SoilPIEKKLKSLKAPLTVFAPHDEIIEQTLRVKPLLKPGATFVDLPEMGQDPFHADLDRMVTLVNRHLPP
Ga0302324_10248382513300031236PalsaKLKGLKSPLTVFAPHDDIIEQTLRVKPLLKASATYVDLPDLGLDLFHAATDRMVALVNRHAPAH
Ga0302324_10266997413300031236PalsaAASSYPTEKKLKGLRTPLTVFAPHDDIIEQTQRVKPMLKADAVYLDLPDLGLDLFHTATDRMAELINRYLPV
Ga0265328_1028322823300031239RhizospherePHDDIIEQTLRVKPLLKAAATYVDLPELGPDPFHVAVDRMVTLVNRHLPA
Ga0265339_1042675823300031249RhizosphereTVLAPHDEIIEQTQRVKPLLKPDAAYVDLPDLGLDPFHSAIDRMVVLVNRHLPA
Ga0302326_1073578013300031525PalsaPHDDILEQTQRVKPLLKAGGSYVDLPELTHDPFHVALDRMIALVNRHLPP
Ga0302326_1320998523300031525PalsaQTARVKLLLKPDAVYIDLPDLGLDPFFAAPERMVDLINKYLPP
Ga0310686_10311412713300031708SoilLKSLKTPLTVFAPHDDIYEQTLRVKPMLKADAAYVDLPELGVDLFHVATERMAEQVNRRLPP
Ga0310686_10459635433300031708SoilGLKSPLTVLAPHDDIIEQTLRVKPLLKASATYVDLPDLGLDLFHAAADRMVTLVNRHAPA
Ga0310686_11950424613300031708SoilKKLKGLKSPLTVFAPHDDIIEQTLRVKPLLKASATYVDLPDLGLDLFHAATDRMVTLVNRHAPAH
Ga0307475_1148198313300031754Hardwood Forest SoilKAPLTVFAPHDDIIEQTLRIKPLLKPDGSYVDLPELGQDPFYVAVDRMVSLVNRHLPL
Ga0302319_1015113513300031788BogTVFAPDDDIIEQTQRAMPLIRADAKYVDLPDLSVDLFRVAVDRMAELINRNLPL
Ga0307479_1103772213300031962Hardwood Forest SoilIEQTLRVKPLLKPGATFVDLPELGQDPFNIALDRMVTLVNRHLPP
Ga0311301_10012060113300032160Peatlands SoilVFAPHDELIEQTERVKPLLKSGDVYVDLPDLGADLFHSATDRMAELLNRHLPA
Ga0307510_1051982413300033180EctomycorrhizaAPHDDIIEQTQRVKPLLKSSATYMDLPEFGLDLFALATDRMVTLVNRQLPAH


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