Metagenome / Metatranscriptome Family F091897

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091897
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	58 residues
Representative Sequence	MIGSTVSTFVNTQYQCCECGKNLGDKYSRLKGKKQPDVNIINGKQYCNKCADKHWND
Number of Associated Samples	56
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.36 %
% of genes near scaffold ends (potentially truncated)	14.95 %
% of genes from short scaffolds (< 2000 bps)	67.29 %
Associated GOLD sequencing projects	42
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.879 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge (39.252 % of family members)
Environment Ontology (ENVO)	Unclassified (92.523 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (42.056 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.41% β-sheet: 15.29% Coil/Unstructured: 75.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00589	Phage_integrase	0.94
PF13443	HTH_26	0.94
PF05105	Phage_holin_4_1	0.94
PF01797	Y1_Tnp	0.94
PF07282	OrfB_Zn_ribbon	0.94
PF03374	ANT	0.94
PF00916	Sulfate_transp	0.94
PF00436	SSB	0.94
PF06067	DUF932	0.94
PF12116	SpoIIID	0.94
PF13495	Phage_int_SAM_4	0.94
PF03237	Terminase_6N	0.94
PF13735	tRNA_NucTran2_2	0.94
PF06046	Sec6	0.94
PF01402	RHH_1	0.94
PF04002	RadC	0.94
PF04851	ResIII	0.94
PF00149	Metallophos	0.94
PF06941	NT5C	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.94
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.94
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.94
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.94
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.94
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.94
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.94
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	0.94
COG4824	Phage-related holin (Lysis protein)	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.42 %
Unclassified	root	N/A	34.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.88 %
Unclassified	root	N/A	34.58 %
Viruses	superkingdom	All Organisms → Viruses	6.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.88 %
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.38 %
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	34.58 %
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.80 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.87 %
Fibrobacteres	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	20.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Negativicutes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	5.61 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	2.80 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	1.87 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %
Fibrobacteria	class	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Veillonellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales	5.61 %
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	2.80 %
Thermoanaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales	2.80 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	1.87 %
Koleobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Koleobacterales	0.93 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %
Fibrobacterales	order	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Veillonellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	5.61 %
Anaerolineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	2.80 %
Thermoanaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae	2.80 %
unclassified Halieaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae	1.87 %
unclassified Eubacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales	1.87 %
Syntrophomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae	1.87 %
Koleobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Koleobacterales → Koleobacteraceae	0.93 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.93 %
Peptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae	0.93 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.93 %
Fibrobacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Massilibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Massilibacillus	5.61 %
Anaerolinea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea	2.80 %
unclassified Syntrophomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae	1.87 %
Clostridiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1.87 %
Halieaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → Halieaceae bacterium	1.87 %
Koleobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Koleobacterales → Koleobacteraceae → Koleobacter	0.93 %
Fibrobacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter	0.93 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.93 %
Dehalobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Dehalobacter	0.93 %
Caldanaerobius	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Caldanaerobius	0.93 %
unclassified Clostridiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae	0.93 %
unclassified Thermoanaerobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Massilibacillus massiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Massilibacillus → Massilibacillus massiliensis	5.61 %
Anaerolinea thermolimosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa	2.80 %
Syntrophomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium	1.87 %
Clostridiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1.87 %
Halieaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → Halieaceae bacterium	1.87 %
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	0.93 %
Koleobacter methoxysyntrophicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Koleobacterales → Koleobacteraceae → Koleobacter → Koleobacter methoxysyntrophicus	0.93 %
unclassified Fibrobacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter	0.93 %
unclassified Dehalobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Dehalobacter → unclassified Dehalobacter	0.93 %
Thermoanaerobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium	0.93 %
Caldanaerobius polysaccharolyticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Caldanaerobius → Caldanaerobius polysaccharolyticus	0.93 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Massilibacillus massiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Massilibacillus → Massilibacillus massiliensis	5.61 %
Anaerolinea thermolimosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa	2.80 %
Syntrophomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium	1.87 %
Clostridiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1.87 %
Halieaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → Halieaceae bacterium	1.87 %
Dehalobacter sp. 4CP	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Dehalobacter → unclassified Dehalobacter → Dehalobacter sp. 4CP	0.93 %
Fibrobacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.	0.93 %
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	0.93 %
Koleobacter methoxysyntrophicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Koleobacterales → Koleobacteraceae → Koleobacter → Koleobacter methoxysyntrophicus	0.93 %
Thermoanaerobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium	0.93 %
Caldanaerobius polysaccharolyticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Caldanaerobius → Caldanaerobius polysaccharolyticus	0.93 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2044078008\|2044874655	Not Available	760	Open in IMG/M
3300000510\|Foulum_1010664	Not Available	1798	Open in IMG/M
3300000510\|Foulum_1015447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium	4182	Open in IMG/M
3300000510\|Foulum_1026907	Not Available	1062	Open in IMG/M
3300002166\|JGI24713J26584_10016862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → Halieaceae bacterium	2732	Open in IMG/M
3300002166\|JGI24713J26584_10054410	Not Available	944	Open in IMG/M
3300002166\|JGI24713J26584_10068024	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300002166\|JGI24713J26584_10116261	Not Available	502	Open in IMG/M
3300002167\|JGI24714J26587_10099588	Not Available	600	Open in IMG/M
3300002167\|JGI24714J26587_10104493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa	577	Open in IMG/M
3300002168\|JGI24712J26585_10000027	All Organisms → cellular organisms → Bacteria	108575	Open in IMG/M
3300002168\|JGI24712J26585_10050362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Dehalobacter → unclassified Dehalobacter → Dehalobacter sp. 4CP	1778	Open in IMG/M
3300002173\|JGI24709J26583_10011804	All Organisms → cellular organisms → Bacteria	5283	Open in IMG/M
3300002174\|JGI24710J26742_10116402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa	890	Open in IMG/M
3300002293\|JGI24504J29685_1020659	Not Available	1893	Open in IMG/M
3300002376\|JGI24505J29691_1028167	Not Available	619	Open in IMG/M
3300002378\|JGI24502J29692_10232462	Not Available	540	Open in IMG/M
3300002898\|draft_10239729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	988	Open in IMG/M
3300004634\|Ga0066906_10129974	Not Available	1506	Open in IMG/M
3300004634\|Ga0066906_10298847	All Organisms → Viruses → Predicted Viral	1042	Open in IMG/M
3300004634\|Ga0066906_10675776	Not Available	708	Open in IMG/M
3300005407\|Ga0074248_1077852	All Organisms → cellular organisms → Bacteria	2354	Open in IMG/M
3300005407\|Ga0074248_1084179	Not Available	639	Open in IMG/M
3300005730\|Ga0076946_131131	All Organisms → cellular organisms → Bacteria	2622	Open in IMG/M
3300006674\|Ga0101770_1001527	All Organisms → cellular organisms → Bacteria	15593	Open in IMG/M
3300006674\|Ga0101770_1009146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6649	Open in IMG/M
3300006674\|Ga0101770_1030659	All Organisms → Viruses → Predicted Viral	4588	Open in IMG/M
3300006674\|Ga0101770_1031012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae	5417	Open in IMG/M
3300006674\|Ga0101770_1051340	All Organisms → Viruses → Predicted Viral	3600	Open in IMG/M
3300006674\|Ga0101770_1105572	All Organisms → Viruses → Predicted Viral	4583	Open in IMG/M
3300006674\|Ga0101770_1127831	Not Available	1061	Open in IMG/M
3300009095\|Ga0079224_100988196	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300009095\|Ga0079224_104013205	Not Available	581	Open in IMG/M
3300009648\|Ga0116175_1011797	All Organisms → cellular organisms → Bacteria	3928	Open in IMG/M
3300009653\|Ga0116169_1082711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1178	Open in IMG/M
3300009653\|Ga0116169_1094451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Massilibacillus → Massilibacillus massiliensis	1079	Open in IMG/M
3300009653\|Ga0116169_1094451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Massilibacillus → Massilibacillus massiliensis	1079	Open in IMG/M
3300009653\|Ga0116169_1163240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	760	Open in IMG/M
3300009654\|Ga0116167_1035042	All Organisms → cellular organisms → Bacteria	2221	Open in IMG/M
3300009654\|Ga0116167_1282449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Massilibacillus → Massilibacillus massiliensis	531	Open in IMG/M
3300009657\|Ga0116179_1003776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Caldanaerobius → Caldanaerobius polysaccharolyticus	10339	Open in IMG/M
3300009663\|Ga0116181_1031277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2666	Open in IMG/M
3300009663\|Ga0116181_1167008	Not Available	838	Open in IMG/M
3300009668\|Ga0116180_1137437	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300009668\|Ga0116180_1201450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	776	Open in IMG/M
3300009668\|Ga0116180_1209064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	757	Open in IMG/M
3300009668\|Ga0116180_1238932	Not Available	694	Open in IMG/M
3300009670\|Ga0116183_1008552	All Organisms → cellular organisms → Bacteria	8860	Open in IMG/M
3300009711\|Ga0116166_1148958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	887	Open in IMG/M
3300009711\|Ga0116166_1190529	Not Available	755	Open in IMG/M
3300009711\|Ga0116166_1278847	Not Available	590	Open in IMG/M
3300009711\|Ga0116166_1286339	Not Available	580	Open in IMG/M
3300009712\|Ga0116165_1016677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3586	Open in IMG/M
3300009712\|Ga0116165_1181298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	721	Open in IMG/M
3300009716\|Ga0116191_1301602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	602	Open in IMG/M
3300009761\|Ga0116168_1040275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium	1435	Open in IMG/M
3300009761\|Ga0116168_1092008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Massilibacillus → Massilibacillus massiliensis	826	Open in IMG/M
3300009761\|Ga0116168_1093583	Not Available	817	Open in IMG/M
3300009761\|Ga0116168_1104403	Not Available	759	Open in IMG/M
3300010263\|Ga0134105_1017117	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300010263\|Ga0134105_1035356	Not Available	988	Open in IMG/M
3300010267\|Ga0134101_1004936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5250	Open in IMG/M
3300010269\|Ga0134102_1024743	Not Available	1442	Open in IMG/M
3300010273\|Ga0134096_1000731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	32590	Open in IMG/M
3300010277\|Ga0134093_1003933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	9768	Open in IMG/M
3300010277\|Ga0134093_1013322	Not Available	2654	Open in IMG/M
3300010281\|Ga0134090_1030173	Not Available	1305	Open in IMG/M
3300010285\|Ga0134091_1007916	All Organisms → Viruses → Predicted Viral	4814	Open in IMG/M
3300010285\|Ga0134091_1008917	All Organisms → Viruses → Predicted Viral	4310	Open in IMG/M
3300010286\|Ga0134092_1058605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	811	Open in IMG/M
3300010428\|Ga0134103_1003015	Not Available	11873	Open in IMG/M
3300012949\|Ga0153798_10091037	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300012949\|Ga0153798_10138003	Not Available	1002	Open in IMG/M
3300012949\|Ga0153798_10149729	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.	930	Open in IMG/M
3300014203\|Ga0172378_10337321	Not Available	1152	Open in IMG/M
3300014203\|Ga0172378_11193121	Not Available	538	Open in IMG/M
3300014204\|Ga0172381_10609939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	834	Open in IMG/M
3300014206\|Ga0172377_10131427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2249	Open in IMG/M
3300019235\|Ga0179952_1239428	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300025471\|Ga0209508_1036804	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300025471\|Ga0209508_1042977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium	1041	Open in IMG/M
3300025534\|Ga0207747_1000200	All Organisms → cellular organisms → Bacteria	75162	Open in IMG/M
3300025587\|Ga0208938_1018703	All Organisms → cellular organisms → Bacteria	2179	Open in IMG/M
3300025587\|Ga0208938_1137245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	532	Open in IMG/M
3300025589\|Ga0209409_1019762	All Organisms → Viruses → Predicted Viral	2478	Open in IMG/M
3300025589\|Ga0209409_1027045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1949	Open in IMG/M
3300025605\|Ga0209720_1024661	All Organisms → cellular organisms → Bacteria	2390	Open in IMG/M
3300025609\|Ga0209608_1077536	Not Available	899	Open in IMG/M
3300025609\|Ga0209608_1146412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Massilibacillus → Massilibacillus massiliensis	560	Open in IMG/M
3300025618\|Ga0208693_1043062	Not Available	1624	Open in IMG/M
3300025657\|Ga0208823_1168493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Massilibacillus → Massilibacillus massiliensis	591	Open in IMG/M
3300025683\|Ga0208564_1105476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	907	Open in IMG/M
3300025683\|Ga0208564_1109846	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300025683\|Ga0208564_1125864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	790	Open in IMG/M
3300025737\|Ga0208694_1144609	Not Available	829	Open in IMG/M
3300027510\|Ga0209537_1026695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → Halieaceae bacterium	2375	Open in IMG/M
3300027510\|Ga0209537_1029077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2184	Open in IMG/M
3300027510\|Ga0209537_1031360	All Organisms → cellular organisms → Bacteria	2036	Open in IMG/M
3300027510\|Ga0209537_1032813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Koleobacterales → Koleobacteraceae → Koleobacter → Koleobacter methoxysyntrophicus	1954	Open in IMG/M
3300027510\|Ga0209537_1076371	Not Available	872	Open in IMG/M
3300027510\|Ga0209537_1082732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa	808	Open in IMG/M
3300027510\|Ga0209537_1110685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	617	Open in IMG/M
3300028602\|Ga0265294_10259306	Not Available	1191	Open in IMG/M
3300028602\|Ga0265294_10407471	Not Available	858	Open in IMG/M
3300031966\|Ga0308420_1097680	Not Available	950	Open in IMG/M
3300033985\|Ga0310135_004283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5018	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	92.52%
Environmental	Environmental	7.48%

Habitat	Taxonomy	Distribution
Wastewater	Engineered → Wastewater	39.25%
Bioreactor	Engineered → Bioreactor	24.30%
Biotransformation	Engineered → Biotransformation	22.43%
Aquatic	Environmental → Aquatic	4.67%
Lab Enrichment	Engineered → Lab Enrichment	3.74%
Terrestrial	Environmental → Terrestrial	2.80%
Solid Waste	Engineered → Solid Waste	1.87%
Unclassified	Engineered → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	39.25%
Mixed Alcohol Bioreactor	Engineered → Biotransformation → Mixed Alcohol Bioreactor	22.43%
Unclassified	Engineered → Bioreactor → Unclassified	14.02%
Continuous Culture	Engineered → Bioreactor → Continuous Culture	7.48%
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Defined Media	Engineered → Lab Enrichment → Defined Media	3.74%
Anaerobic	Engineered → Bioreactor → Anaerobic	2.80%
Soil	Environmental → Terrestrial → Soil	1.87%
Landfill	Engineered → Solid Waste → Landfill	1.87%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.93%
Unclassified	Engineered → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	39.25%
Unclassified	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified	22.43%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	14.02%
Marine Sediment Inoculum	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum	7.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.74%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified	3.74%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	1.87%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	1.87%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.93%
Unclassified	Engineered → Unclassified → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	39.25%
Unclassified	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified	22.43%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	14.02%
Unclassified	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified	7.48%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.74%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified	3.74%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.87%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Unclassified → Unclassified → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	39.25%
Biogas Fermentantion	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion	19.63%
Switchgrass Degrading	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading	14.02%
Food Waste	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste	7.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	3.74%
Ionic Liquid And High Solid Enriched	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched	3.74%
Anaerobic Digester	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester	2.80%
Mixed Alcohol Bioreactor	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Mixed Alcohol Bioreactor	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	1.87%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	1.87%
Hot Spring Phototrophic Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat	0.93%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	0.93%
Biogas Fermenter	Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2044078008	Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16	Engineered	Open in IMG/M
3300000510	Anaerobic digester microbial communities from Northern Denmark, sample from Foulum manure	Engineered	Open in IMG/M
3300002166	Biogas fermentation microbial communities from Germany - Plant 4 DNA1	Engineered	Open in IMG/M
3300002167	Biogas fermentation microbial communities from Germany - Plant 4 DNA2	Engineered	Open in IMG/M
3300002168	Biogas fermentation microbial communities from Germany - Plant 3 DNA2	Engineered	Open in IMG/M
3300002170	Biogas fermentation microbial communities from Germany - Plant 3 DNA1	Engineered	Open in IMG/M
3300002173	Biogas fermentation microbial communities from Germany - Plant 2 DNA1	Engineered	Open in IMG/M
3300002174	Biogas fermentation microbial communities from Germany - Plant 2 DNA2	Engineered	Open in IMG/M
3300002293	Biogas fermentation microbial communities from Germany - Plant 4 RNA1 (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300002376	Biogas fermentation microbial communities from Germany - Plant 4 RNA2 (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300002378	Biogas fermentation microbial communities from Germany - Plant 3 RNA1 (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300002898	Metagenome Biopara biogasfermenter May 2013 pooled	Engineered	Open in IMG/M
3300004634	High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1D-10D	Engineered	Open in IMG/M
3300005407	Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16	Engineered	Open in IMG/M
3300005730	Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway	Engineered	Open in IMG/M
3300006674	Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038	Engineered	Open in IMG/M
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental	Open in IMG/M
3300009648	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG	Engineered	Open in IMG/M
3300009653	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC130_MetaG	Engineered	Open in IMG/M
3300009654	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaG	Engineered	Open in IMG/M
3300009657	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG	Engineered	Open in IMG/M
3300009663	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC075_MetaG	Engineered	Open in IMG/M
3300009668	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaG	Engineered	Open in IMG/M
3300009670	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG	Engineered	Open in IMG/M
3300009711	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR2_MetaG	Engineered	Open in IMG/M
3300009712	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR1_MetaG	Engineered	Open in IMG/M
3300009716	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG	Engineered	Open in IMG/M
3300009761	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC129_MetaG	Engineered	Open in IMG/M
3300010263	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 16_60_3.3_214_A3 metaG	Engineered	Open in IMG/M
3300010267	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 12_48_3.3_201_A2 metaG	Engineered	Open in IMG/M
3300010269	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 13_49_3.3_201_A3 metaG	Engineered	Open in IMG/M
3300010273	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 7_21_20_110_A3 metaG	Engineered	Open in IMG/M
3300010277	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 4_13_20_68_A1 metaG	Engineered	Open in IMG/M
3300010281	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 1_4_20_6_A1 metaG	Engineered	Open in IMG/M
3300010285	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 2_5_20_6_A2 metaG	Engineered	Open in IMG/M
3300010286	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 3_6_20_6_A3 metaG	Engineered	Open in IMG/M
3300010428	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 14_58_20_212_A1 metaG	Engineered	Open in IMG/M
3300012949	Switchgrass enrichment cultures co-assembly	Engineered	Open in IMG/M
3300014203	Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Pumphouse #3_1 metaG	Environmental	Open in IMG/M
3300014204	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG	Engineered	Open in IMG/M
3300014206	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3 metaG	Engineered	Open in IMG/M
3300019235	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNMR1_MetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300025471	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC129_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025534	High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D (SPAdes)	Engineered	Open in IMG/M
3300025587	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025589	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR1_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025605	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025609	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC130_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025618	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025657	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC075_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025683	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025737	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG (SPAdes)	Engineered	Open in IMG/M
3300027510	Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)	Engineered	Open in IMG/M
3300028602	Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3	Environmental	Open in IMG/M
3300031966	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55	Environmental	Open in IMG/M
3300033985	Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2044913172	2044078008	Mixed Alcohol Bioreactor	MIGSSIPTFLNIQYQCCKCGKDLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND
Foulum_10106642	3300000510	Anaerobic Digester	MIGSSISFFPNTQYQCCECGRNLGDKYSRLKGRKQPTVIIINDKQYCIKCADKHWDYQIKRM*
Foulum_10154476	3300000510	Anaerobic Digester	MMIGSTVSTFANTQYQCCECGKYLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWND*
Foulum_10269072	3300000510	Anaerobic Digester	MIGSSINSFPNIQYQCCECGKYLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
JGI24713J26584_100168624	3300002166	Biogas Fermentantion	MTGSSIPCFANEMFICRDCGRNLGDRYSRLKGKKQPDVIIINGKHYCSKCADKHFMVK*
JGI24713J26584_100544104	3300002166	Biogas Fermentantion	MIGSTVSTFANTQYKCCECNKNLGDKYSRLKGKKQPDVNIIKGKLYCNRCADKHWND*
JGI24713J26584_100680242	3300002166	Biogas Fermentantion	MIGSSISSFPNTQYQCCECGKDLGDKYSRLKGKKQPDVNIINGKQYCNKCADKHWDYQIKRM*
JGI24713J26584_101162611	3300002166	Biogas Fermentantion	IKKEFVINMIGSSINSFPNTQYQCCECGKNLGDKYSRLKGKKQPDINIINGKQYCXXCADXXWND*
JGI24714J26587_100995882	3300002167	Biogas Fermentantion	MMIGSIVSKFPNTQYQCCECGRNLGDKYSRLKGKKQPTVIIINDKQYCIKCADKHWDYQIKRM*
JGI24714J26587_101044932	3300002167	Biogas Fermentantion	MIGSSISSFPNTQYQCCECGKDLGDKYSRLKGKKQPDVNIINGKQYCNKCADKYWDYQIKRM*
JGI24712J26585_1000002761	3300002168	Biogas Fermentantion	MIGSSINSFPNMQYQCCKCGKDLGDKYSRLKGKKQPDVNIINGKQYCNKCADKYWND*
JGI24712J26585_100503622	3300002168	Biogas Fermentantion	MIGSSMNSFPNAQYQCCKCGKYLGDKYSRLKGKKQPDVNIIKGKQYCNKCADKY*
JGI24711J26586_100583884	3300002170	Biogas Fermentantion	MIGSAIPCFHNEMFICNDCGRNLGDRYSRLKGKKQPDVTIINGRQYCNKCADKHYNEVNF
JGI24709J26583_100118045	3300002173	Biogas Fermentantion	MIGSLINSFPNAQYQCCKCGKYLGDKYLRLKGKKQSDVNIINGKQYCNKCADKHWND*
JGI24710J26742_101164022	3300002174	Biogas Fermentantion	MIGSSMNSFPNIQYQCCKCGKDLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
JGI24504J29685_10206594	3300002293	Biogas Fermentantion	MIGSSISFFPNTQYQCCECGRNLGDKYSRLKGKKQPTVIIINDKQYCIKCADKHWDYQIKRM*
JGI24505J29691_10281671	3300002376	Biogas Fermentantion	MIGSSIPCFANEMFICRDCGRNLGDRYSRLKGKKQPDVIIINDKHYCSKCADKHFNFEDIKI
JGI24502J29692_102324623	3300002378	Biogas Fermentantion	MIGSAIPCFHNEMFICNDCGRNLGDRYSRLKGKKQPDVTIINGRQYCNK
draft_102397292	3300002898	Biogas Fermenter	MMIGSTVSKFPNTQYQCCECGKNLGDKYSRLKGKKQPTVNIIKGKLYCNKCADKHWND*
Ga0066906_101299741	3300004634	Ionic Liquid And High Solid Enriched	MIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCAD
Ga0066906_102988471	3300004634	Ionic Liquid And High Solid Enriched	MIGSSINSFPNMQYQCCKCGKDLGDKYSRLKQKQPDVNIIKGKLYCNKCAD
Ga0066906_106757762	3300004634	Ionic Liquid And High Solid Enriched	MGIGSCQSFFPNKNYICENCGRNLRDKYSRLKGKKQPNVNIINGKYYCDRCFDEQLSK*
Ga0074248_10778524	3300005407	Mixed Alcohol Bioreactor	MIGSSINSFPNAQYQCCKCGKYLGDKYLRLKGKKQPDVNIINGKQYCNKCADKHWND*
Ga0074248_10841792	3300005407	Mixed Alcohol Bioreactor	MIGSSIPTFLNIQYQCCKCGKDLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0076946_1311312	3300005730	Food Waste	MIGSSVPTYPIKKYRCCICDRNLGDSLSRLKGKKQPCVNIINGKCYCNKCAEEFWEK*
Ga0101770_100152723	3300006674	Food Waste	MIGSSIPCFANEMFICRDCGRNLGDRYSRLKGKKQPDVIIINDKHYCSKCADKHFFNMVK
Ga0101770_100914617	3300006674	Food Waste	MIDSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0101770_10306595	3300006674	Food Waste	MIGSSMSYFPNTQYQCCKCGKKLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWND*
Ga0101770_10310125	3300006674	Food Waste	MIGSSISFFPNTQYQCCECGRNLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM*
Ga0101770_10513405	3300006674	Food Waste	MIGSTVSTFANTQYKCCECNKILGDKYSRLKGKKQPNVNIINGKYYCDRCFDEQLSK*
Ga0101770_11055728	3300006674	Food Waste	MIGSSMSYFPNTQYQCCECGRNLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWNN*
Ga0101770_11278314	3300006674	Food Waste	SIYNMMIGSTVSTFANTQYQCCECGKNLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWND*
Ga0079224_1009881963	3300009095	Agricultural Soil	VINMIGSSINSFPNTQYQCCECGKDLGDKYSRLKGKKQPDVNIINGKQYCNKCADKYWDYQIKRM*
Ga0079224_1040132051	3300009095	Agricultural Soil	MIGSTVSTFANTQYKCCECGKYLGDKYSRLKGKKQPDVNIINGKQYCNKCADKHWND*
Ga0116175_10117972	3300009648	Anaerobic Digestor Sludge	MKGVYNMIGSSIPTFLNIQYRCCKCGKDLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0116169_10827112	3300009653	Anaerobic Digestor Sludge	MMIGSTVSTFANTQYQCCECGKNLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM*
Ga0116169_10944512	3300009653	Anaerobic Digestor Sludge	MIGSTIASYPNRSYICDKCGKNLGDRYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0116169_10944514	3300009653	Anaerobic Digestor Sludge	MIGSTVSTFANTQYKCCECNKILGDKYSRLKGKKQPNVNIINGKYYCDKCFDEHLSK*
Ga0116169_11632402	3300009653	Anaerobic Digestor Sludge	MIGSSIPCFANEMFVCRDCGRNLGDRYSRLKGKKQPDVIIINGKHYCSKCADKHFNEKKN
Ga0116167_10350423	3300009654	Anaerobic Digestor Sludge	MIGSSIPCFANEMFICRDCGRNLGDRYSRLKGKKQPDVIIINDKHYCSKCADKHFMVK*
Ga0116167_12824492	3300009654	Anaerobic Digestor Sludge	ENTKYQCCECGKYLGDKYSRLKGKKQPDVNIIKGKQYCNKCADKHWND*
Ga0116179_10037767	3300009657	Anaerobic Digestor Sludge	MIGSTVSTFVNTKYKCCKCGKNLGDKYSRLKGKKQPNVNIINGKYYCDRCFDKNLEELEKAYYS*
Ga0116181_10312773	3300009663	Anaerobic Digestor Sludge	MIGSTIASYPNRAYICGNCGKHLGDRYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0116181_11670081	3300009663	Anaerobic Digestor Sludge	MIGSTISTFVNTKYKCCECGKNLGDKYSRLKGKKQIDVNIINGKQYC
Ga0116180_11374372	3300009668	Anaerobic Digestor Sludge	MKGVYNMIGSSISSFPNTQYQCCECGKNLGDKYSRLKGKKQPTVIIIKGKQYCNKCADKHWND*
Ga0116180_12014502	3300009668	Anaerobic Digestor Sludge	MIGSSMSCFPNTQYQCCKCGKKLGDKYSRLKGKKQPDVNIIKGKQYCNKCADKHWND*
Ga0116180_12090643	3300009668	Anaerobic Digestor Sludge	MIGSTVSTFVNTKYKCCECGRNLGDKYSRLKGKKQIDVNIINGKQYCNKCADKYWNN*
Ga0116180_12389323	3300009668	Anaerobic Digestor Sludge	MIKMKGSLIPCFANEMFICRDCGRNLGDRYSRLKGKKQPDVIIINGKHYCSKCADK
Ga0116183_10085527	3300009670	Anaerobic Digestor Sludge	MIGSTVAIFPNPTYICEDCGRNLGDRYSRLKGKKQPCVNIIKEKVYCDKCADKHYDEIAKI*
Ga0116166_11489582	3300009711	Anaerobic Digestor Sludge	MMMGSITPTFENTKYQCCECGKYLGDKYSRLKGKKQPDVNIIKGKQYCNKCADKHWND*
Ga0116166_11905292	3300009711	Anaerobic Digestor Sludge	MIGSTVSTFVNTKYKCCECGKNLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM*
Ga0116166_12788471	3300009711	Anaerobic Digestor Sludge	MIGSSIPCFANKMFICRDCGRNLGDRYSRLKGKKQPDVIIINGKHYCSKCAD
Ga0116166_12863392	3300009711	Anaerobic Digestor Sludge	MIGSTVSTFANMQYKCCECNKILGDKYSRLKGKKQPNVNIINGKYYCDRCFDEQLSK*
Ga0116165_10166778	3300009712	Anaerobic Digestor Sludge	MIGSTVSTFANTQYKCCECSKNLGDKYSRLKGKKQPNVNIINGKYYCDRCFDEQLSK*
Ga0116165_11812984	3300009712	Anaerobic Digestor Sludge	VAANAGRMMIKMIGSAIPCFHNEMFICSDCGRNLGDRYSRLKGKKQPDVTIINGRQYIKY
Ga0116191_13016022	3300009716	Anaerobic Digestor Sludge	MIGSSMSCFPNTQYQCCKCGKKLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKYWND*
Ga0116168_10402751	3300009761	Anaerobic Digestor Sludge	MIGSTVSTFANTQYKCCECSKILGDKYSRLKGKKQPNVNIINGKYYCDRCFDEQLSK*
Ga0116168_10920083	3300009761	Anaerobic Digestor Sludge	MIGSTVSTFANTQYKCCECGKNLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM*
Ga0116168_10935832	3300009761	Anaerobic Digestor Sludge	MIGSTVSTFANTQYQCCECGKNLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM*
Ga0116168_11044031	3300009761	Anaerobic Digestor Sludge	MKGVYNMIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWNN*
Ga0134105_10171171	3300010263	Switchgrass Degrading	MIGSSIPTFLNIQYRCCKCGKDLGDKYSRFKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0134105_10353562	3300010263	Switchgrass Degrading	MIGSSISSFPNTQYQCCECGRNLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM*
Ga0134101_10049364	3300010267	Switchgrass Degrading	MIGSTVSTFVNTQYQCCECGKNLGDKYSRLKGKKQPDVNIINGKQYCNKCADKHWND*
Ga0134102_10247435	3300010269	Switchgrass Degrading	MMIGSTVSTFVNTQYQCCECGKNLGDKYSRLKGKKQPDVNIINGKQYCNKCADKHWND*
Ga0134096_100073123	3300010273	Switchgrass Degrading	MIGSSVSSFPNTQYQCCECGKYLGDKYSRLKGKKQPNVNIINGKQYCNKCADKYWND*
Ga0134093_100393321	3300010277	Switchgrass Degrading	MKGVYNMIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKCKLYCNKCADKHWND*
Ga0134093_10133225	3300010277	Switchgrass Degrading	MIGSSIISFPNTQYQCCECGKYLGDKYSRLKGKKQPDVNIINGKQYCNKCADKYWND*
Ga0134090_10301731	3300010281	Switchgrass Degrading	MKGVYNMIGSSIPTFLNMQYRCRECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0134091_10079169	3300010285	Switchgrass Degrading	MIGSSMNSFPNTQYQCCKCGKDLGNKYSRLKGKKQPDVNIIKGKQYCNKCADKYWND*
Ga0134091_10089175	3300010285	Switchgrass Degrading	MIGSSMSCFPNTQYQCCKCGKKLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM*
Ga0134092_10586052	3300010286	Switchgrass Degrading	MKGAYNMIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0134103_100301513	3300010428	Switchgrass Degrading	MIGSTIASYPNRAYICDNCGKHLGDRYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0153798_100910373	3300012949	Switchgrass Degrading	MKGAYNMIGSSIPTFLNIQYRCCKCGKDLGDKYSRFKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0153798_101380034	3300012949	Switchgrass Degrading	MIGSAIPCFHNEMFICNDCGRNLGDRYSRLKGKKQPDVTIINGRQYC
Ga0153798_101497293	3300012949	Switchgrass Degrading	MIGSTVSTFVNTKYKCCECGKDLGDKYSRLKGKKQPDVTIINGRQYCNKCADKHYNEVNFKIK*
Ga0172378_103373213	3300014203	Groundwater	MKGVYNMIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0172378_111931211	3300014203	Groundwater	MMGSITPTFENTKYQCCECGKDLGDKYSRLKGKKQPDANIIKGKLYCNKCADKHWND*
Ga0172381_106099391	3300014204	Landfill Leachate	MFGSEVAVFPNQHYQCCKCGKKLGDRYSRLKGKKQPDVNIVKGEQYCNKCYYKNFE*
Ga0172377_101314274	3300014206	Landfill Leachate	MRGSSIPCFANKIFICHDCGRNLGDRYSRLKGKKQPDVIIINDKHYCSKCADKHFMAK*
Ga0179952_12394283	3300019235	Anaerobic Digestor Sludge	MIGSSIPCFTNEMFVCRDCGKNLGDRYSRLKGKKQPDVIIINGKHYCSKCADKHF
Ga0209508_10368042	3300025471	Anaerobic Digestor Sludge	MIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWNN
Ga0209508_10429772	3300025471	Anaerobic Digestor Sludge	MIGSTVSTFANTQYKCCECSKILGDKYSRLKGKKQPNVNIINGKYYCDRCFDEQLSK
Ga0207747_100020036	3300025534	Ionic Liquid And High Solid Enriched	MIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND
Ga0208938_10187035	3300025587	Anaerobic Digestor Sludge	MIGSSIPTFLNIQYRCCKCGKDLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND
Ga0208938_11372451	3300025587	Anaerobic Digestor Sludge	MMIGSTVSTFANTQYKCCECGKYLGDKYSRLKGKKQPDVNIINGKQYCNKCADKHWND
Ga0209409_10197625	3300025589	Anaerobic Digestor Sludge	MMMGSITPTFENTKYQCCECGKYLGDKYSRLKGKKQPDVNIIKGKQYCNKCADKHWND
Ga0209409_10270455	3300025589	Anaerobic Digestor Sludge	MIGSTVSTFANTQYKCCECSKNLGDKYSRLKGKKQPNVNIINGKYYCDRCFDEQLSK
Ga0209720_10246613	3300025605	Anaerobic Digestor Sludge	MIGSSIPCFANEMFICRDCGRNLGDRYSRLKGKKQPDVIIINDKHYCSKCADKHFMVK
Ga0209608_10775364	3300025609	Anaerobic Digestor Sludge	GVYNMIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWN
Ga0209608_11464122	3300025609	Anaerobic Digestor Sludge	MIGSTVSTFANTQYKCCECNKILGDKYSRLKGKKQPNVNIINGKYYCDKCFDEHLSK
Ga0208693_10430622	3300025618	Anaerobic Digestor Sludge	MIGSTVSTFVNTKYKCCKCGKNLGDKYSRLKGKKQPNVNIINGKYYCDRCFDKNLEELEKAYYS
Ga0208823_11684933	3300025657	Anaerobic Digestor Sludge	MIGSTIASYPNRAYICGNCGKHLGDRYSRLKGKKQPDVNIIKGKLYCNKCADKHWND
Ga0208564_11054762	3300025683	Anaerobic Digestor Sludge	MIGSSMSCFPNTQYQCCKCGKKLGDKYSRLKGKKQPDVNIIKGKQYCNKCADKHWND
Ga0208564_11098461	3300025683	Anaerobic Digestor Sludge	MIGSSISSFPNTQYQCCECGKNLGDKYSRLKGKKQPTVIIIKGKQYCNKCADKHWND
Ga0208564_11258641	3300025683	Anaerobic Digestor Sludge	MIGSTVSTFVNTKYKCCECGRNLGDKYSRLKGKKQIDVNIINGKQYCNKCADKYWNN
Ga0208694_11446093	3300025737	Anaerobic Digestor Sludge	MIGSTVAIFPNPTYICEDCGRNLGDRYSRLKGKKQPCVNIIKEKVYCDKCADKHYDEIAK
Ga0209537_10266954	3300027510	Biogas Fermentantion	MTGSSIPCFANEMFICRDCGRNLGDRYSRLKGKKQPDVIIINGKHYCSKCADKHFMVK
Ga0209537_10290774	3300027510	Biogas Fermentantion	MIGSTVSTFANTKYKCCECGKNLGDKYLRLKGKKQPDVNIINGKYYCDRCFDEQLSK
Ga0209537_10313605	3300027510	Biogas Fermentantion	MIGSTVSTFANTQYKCCECNKNLGDKYSRLKGKKQPDVNIIKGKLYCNRCADKHWND
Ga0209537_10328133	3300027510	Biogas Fermentantion	MIGSSISFFPNTQYQCCECGRNLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM
Ga0209537_10763712	3300027510	Biogas Fermentantion	MIGSSVPYFANEMFICCDCGRNLGDRYSRLKGKKQPDVLIINNKHYCSKCAEKHLK
Ga0209537_10827322	3300027510	Biogas Fermentantion	MIGSSINSFPNIQYQCFKCGKDLGDKYSRLKGKKQPDVNIINGKQYCNKCADKYWND
Ga0209537_11106851	3300027510	Biogas Fermentantion	MIGSSINSFPNTQYQCCECGKNLGDKYSRLKGKKQPDINIINGKQYCNKCADKHWND
Ga0265294_102593065	3300028602	Groundwater	MFGSEVAVFPNQHYQCCKCGKKLGDRYSRLKGKKQPDVNIVKGEQYCNKCYYKNFE
Ga0265294_104074711	3300028602	Groundwater	MIGSSTSSFPNTQYQCCECGKYLGDKYSRLKGKKQPDVNIINGKQYCNKCVDKHWTVKPLEY
Ga0308420_10976803	3300031966	Hot Spring Phototrophic Mat	MIGSSVTTFPNINYKCCICGKNLGDKYSRLKNKKQPDVNVIKGKFYCNKCADKNWERSNVLNANQ
Ga0310135_004283_1768_1941	3300033985	Fracking Water	MIGSSMNSFPNTQYQCCKCGKNLGNKYSRLKGKKQPDVNIINGKQYCNKCADKHWND

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091897

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences