3300005407: Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16

Overview

Basic Information

• IMG/M Taxon OID: 3300005407
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045767 | Gp0051664 | Ga0074248
• Sample Name: Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72060903
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mixed Alcohol Bioreactor Microbial Communities From Texas A&M University
• Type: Engineered
• Taxonomy: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Mixed Alcohol Bioreactor → Mixed Alcohol Bioreactor Microbial Communities From Texas A&M University

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: Texas A and M University College Station, Texas, USA
• Coordinates
  • Lat. (^o): 30.620833
  • Long. (^o): -96.341111
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038199	Metagenome	166	Y
F087072	Metagenome / Metatranscriptome	110	Y
F088752	Metagenome / Metatranscriptome	109	N
F091897	Metagenome / Metatranscriptome	107	Y
F093744	Metagenome / Metatranscriptome	106	Y
F101010	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074248_1018919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	3419
Ga0074248_1020562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	4494
Ga0074248_1033174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	2243
Ga0074248_1063323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3195
Ga0074248_1064981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1056
Ga0074248_1077852	All Organisms → cellular organisms → Bacteria	2354
Ga0074248_1084179	Not Available	639
Ga0074248_1089364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2313
Ga0074248_1110499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	534
Ga0074248_1111856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	847

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074248_1018919	Ga0074248_10189197	F088752	MKGLQSVYDQIINILKENNVLINITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDE*
Ga0074248_1020562	Ga0074248_10205624	F088752	MKELQSVYNQITNILKENNVLINITPPRPYLIKKDDEERINAEAESLLKKGKIKEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDK*
Ga0074248_1033174	Ga0074248_10331744	F038199	MIQYTQAEFLNIIKQYSSTDRSIIKANLKRIMDIYGIKPADIIALGYSSRNVYAWTNKSTNNIPLFGQALNIAVHFDFNITEFLK*
Ga0074248_1063323	Ga0074248_10633233	F101010	MFRIENAYATVWSVEDKGNYVKGRISTSEKNKEGKYVNSNWFVTFVGKAKEPALALSTKDRIKITSGKISNTTTGEGKDKKSYLNVVIFDFENMSNSQTDNQMDDLPF*
Ga0074248_1064981	Ga0074248_10649811	F087072	HLELSEEELGIIAGALYCANSEDIKCFVDKYKYPCAGYNFDEIAELKDRLSEEINKIIEGK*
Ga0074248_1077852	Ga0074248_10778524	F091897	MIGSSINSFPNAQYQCCKCGKYLGDKYLRLKGKKQPDVNIINGKQYCNKCADKHWND*
Ga0074248_1084179	Ga0074248_10841792	F091897	MIGSSIPTFLNIQYQCCKCGKDLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0074248_1089364	Ga0074248_10893643	F101010	MILFNNVYATVWEVEDKGNFVKGRISTSEKNKEGKYVNSYWFVTFVGKAKESALALSTKDRIKITSGKISNTTTGDGKNKKTYTNVTIFEFENVNNNQDNMQNVPF*
Ga0074248_1110499	Ga0074248_11104991	F087072	MKATVFTKRMFSLELSEEELGIIAGALYCVDGSDIKYFVDEYKYPCNGYNFDEINDIKHNLSEQINKLVEGKN*
Ga0074248_1111856	Ga0074248_11118562	F093744	MGFKIGDRVEVNYPVDDFQGHIGIVKKIITDTELIPGKTLVICYWAFLDKEIGFYESSLDLI*