3300010277: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 4_13_20_68_A1 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010277
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121361 | Gp0153727 | Ga0134093
• Sample Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 4_13_20_68_A1 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 269790837
• Sequencing Scaffolds: 31
• Novel Protein Genes: 36
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium 1xD8-6	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → unclassified Peptococcaceae → Peptococcaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella magna	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Zizaniinae → Zizania → Zizania palustris	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000330	Metagenome / Metatranscriptome	1285	Y
F000412	Metagenome / Metatranscriptome	1169	Y
F001938	Metagenome / Metatranscriptome	614	Y
F003852	Metagenome / Metatranscriptome	465	Y
F004472	Metagenome / Metatranscriptome	436	Y
F004718	Metagenome / Metatranscriptome	426	Y
F010244	Metagenome / Metatranscriptome	306	Y
F017083	Metagenome / Metatranscriptome	242	Y
F019116	Metagenome / Metatranscriptome	231	Y
F021959	Metagenome / Metatranscriptome	216	Y
F038199	Metagenome	166	Y
F059695	Metagenome / Metatranscriptome	133	N
F063614	Metagenome / Metatranscriptome	129	Y
F083626	Metagenome / Metatranscriptome	112	Y
F087072	Metagenome / Metatranscriptome	110	Y
F088752	Metagenome / Metatranscriptome	109	N
F088753	Metagenome / Metatranscriptome	109	N
F091897	Metagenome / Metatranscriptome	107	Y
F093153	Metagenome / Metatranscriptome	106	N
F093744	Metagenome / Metatranscriptome	106	Y
F101010	Metagenome / Metatranscriptome	102	N
F103108	Metagenome / Metatranscriptome	101	N
F105007	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134093_1001010	All Organisms → cellular organisms → Bacteria	30115
Ga0134093_1003497	Not Available	11011
Ga0134093_1003933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	9768
Ga0134093_1006610	All Organisms → cellular organisms → Bacteria	5659
Ga0134093_1012834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2757
Ga0134093_1013322	Not Available	2654
Ga0134093_1013334	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium 1xD8-6	2651
Ga0134093_1013709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → unclassified Peptococcaceae → Peptococcaceae bacterium	2576
Ga0134093_1018265	Not Available	1955
Ga0134093_1020937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1714
Ga0134093_1021422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1683
Ga0134093_1029027	All Organisms → cellular organisms → Bacteria	1281
Ga0134093_1031229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella magna	1204
Ga0134093_1037502	Not Available	1031
Ga0134093_1045181	Not Available	886
Ga0134093_1050116	Not Available	816
Ga0134093_1051753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	795
Ga0134093_1054316	Not Available	765
Ga0134093_1055262	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Zizaniinae → Zizania → Zizania palustris	754
Ga0134093_1058510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium	720
Ga0134093_1060629	Not Available	700
Ga0134093_1067261	Not Available	646
Ga0134093_1079014	Not Available	572
Ga0134093_1079788	Not Available	567
Ga0134093_1084963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	540
Ga0134093_1085033	Not Available	540
Ga0134093_1085223	Not Available	539
Ga0134093_1088209	Not Available	525
Ga0134093_1092584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	506
Ga0134093_1093137	Not Available	504
Ga0134093_1093640	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Zizaniinae → Zizania → Zizania palustris	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134093_1001010	Ga0134093_100101043	F001938	MIEKIYKNKYMVICDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEWNHYCPKCQEG*
Ga0134093_1003497	Ga0134093_10034977	F101010	MILFNNVYATVWEVEDKGNFVKGRISTSEKNKEGKYVNSYWFATFVGKAKETALTLSTKDRIKIISGKISNTTTGEGKDKKSYVNVTIFDFESLNNSQTDSQMDELPF*
Ga0134093_1003933	Ga0134093_100393311	F063614	MNRRLQKMSYVRLKLTIETLVKTGLEKVNVLGVEESQADLWQIYDMCQELMAFWDSELTEERIDELEEIMAELPLLKKV*
Ga0134093_1003933	Ga0134093_100393316	F038199	MIQYTQAEFLQLMQQYNSTDRKVIKANLRRIMDTYGIKPADIINLGYSPRNVYAWTNKSTKNIPLFEQALNIAVHFDFSITEFLK*
Ga0134093_1003933	Ga0134093_100393321	F091897	MKGVYNMIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKCKLYCNKCADKHWND*
Ga0134093_1006610	Ga0134093_100661011	F010244	MTYKVKFTHSDKSRARIDGIEVREGKVVYIHPRRLFIVLEFQGQSGNFREAFWPEEVVEVI*
Ga0134093_1012834	Ga0134093_10128342	F001938	VIELIEKIYKNKYMCICDNCGTGQECDSWADVMDFMNEEGWKKKLVDGEWKHYCPECNYSIIAGGTGFDN*
Ga0134093_1013322	Ga0134093_10133224	F093744	MINIGGYNMGFKIGDRVEVNYPVEDFQGHIGIVKKIITDTELIPGKTVVICYWAFLDKEIAFYESSLDLI*
Ga0134093_1013322	Ga0134093_10133225	F091897	MIGSSIISFPNTQYQCCECGKYLGDKYSRLKGKKQPDVNIINGKQYCNKCADKYWND*
Ga0134093_1013334	Ga0134093_10133342	F087072	MQSRVFTKRVFSLELSEEELGIIAGALYCANSEDIKCFVDKYKYPCSGFNFDEIAECQEKLSEEINKLIENR*
Ga0134093_1013709	Ga0134093_10137097	F001938	MIEKIYKSKYMAICDNCGTGQECDSWADVMNFMNEEGWKKRLVDGEWKHYCPECQEGLR*
Ga0134093_1018265	Ga0134093_10182652	F088753	MTECGRILQELEMLKKTNDERLARRLSDWYGFVLSELTSGRVGDFIRSVPADFVALPFNRKRVENLINKCIKTLFEMVKDGKIPFETTAYMAESLRTGRKVRLRHAGQICSKKLGHVLPVVLHKETITEIILREAKFLALSKVAVVVKLYSRIPDKFYPGVCYLSSDCDIAKRALRNITKDFIKDRMSSFPKVNLTKNFFYLESGYGFDESGIIFINKGRVYYRTNDGTHELPDADLDSREELYMQIARAVAKVIEYEVATEFEKEKFAREDDDWVLEIR*
Ga0134093_1020937	Ga0134093_10209372	F021959	MSEQEIARLQEQIKTLFGDVNELKEDVKEIKQQLANRLPLWATMLISALTGVIGWLIR*
Ga0134093_1021422	Ga0134093_10214223	F010244	MTYKVKFSHSEKSSAHMAKAEMREGEIIYQHPEGRFIVLEFQGVGGKFREAFWPEQVVEVGI*
Ga0134093_1029027	Ga0134093_10290272	F093744	MGLKIGDRVEVNYSIDDFPGHVGIVKEVKESTEFPGKTIVVCYWPFLDKEIAFFEESLVLV*
Ga0134093_1031229	Ga0134093_10312291	F019116	MAMKKKTSIMLSARDKRLLELLAKKEARSQTKELEYLIRRRAEELKIKEP*
Ga0134093_1037502	Ga0134093_10375023	F103108	MEKTELLIPFTKKLAEAAGLAKETKKGERFFRCLRVPGYFPPKGDLESFAERLCKLLLEKHEEALLYTEGGLRRILEDFPAAEEILEKLSSSWEEDAPDAYAVVSRSDGEWAVLFGYEDSVEAVLCKK
Ga0134093_1045181	Ga0134093_10451813	F019116	IMLSARDKRLLELLAKKEARSQTAEIEYLIRRRADELKIEEP*
Ga0134093_1050116	Ga0134093_10501161	F088753	RLARRLSDWYGFVLSELTSGRVGDFIRSVPADFVSLLFNGKIVEKLINKCTRTLFEMAEDGRIPFETTAYMAESLRTGRKFRLRYAGQLCSKKLGPVLPIILHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCMSSDCNIAKKVLRNITKDFVKDRMSSFPKVDLKKDFFYLESGYGFGENGIIFINKGRAYYRTKDGTHELPDADLDSREELFMQISRAVAKVIEYEVATEFEKEKYAREDDDWVLEIR*
Ga0134093_1051726	Ga0134093_10517261	F105007	ISYRESDAVFRIAQRFFSRKSYLSLKDVVPKWYEKVKREILNGRRGVFMHTVPLGSTEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVSNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSNRAGYAYGYLDELSVFADEKDAERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMND
Ga0134093_1051753	Ga0134093_10517532	F001938	MIEKIYKNKYMATCDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEWKHFCPECVEVKEP
Ga0134093_1054316	Ga0134093_10543161	F083626	MGWIGCIRCEKSHRDFVARTFV*IEPVQYVLQQVSCSYKTIPNAPKYYETYPNITLGSMGWIGIVHCEKSGRHFVARSFALIAPVHPVLHRVSCSYETITNAPKHYETHQNKSLGSNGVDQVLRLRKITKQLRGTNICVNCTSLVCFATSFMQLRNDLKCTQILQDA
Ga0134093_1055262	Ga0134093_10552621	F017083	MKLYLKVIGCSCYTCLPRTAPAAAQSARKTAAPGTGTGAPQMDQRLLTNTWPKQGTTISIQANTNKN*
Ga0134093_1058510	Ga0134093_10585101	F088752	KENNVLINITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTSFYEEGDE*
Ga0134093_1060629	Ga0134093_10606291	F000412	YVLIDLL*AGASVAPAQPTSLR*N*GIFAQTCSTCLEGLYRKESSGAHPCRAIDRA*EPRIPFPCSLNAITRATGSKIRSSRSRWNRGTEYYPVGMKTHIEYPDIFF*KYNSPYHIEMGTYVLIDLL*AGGSVAPAQPTSLR*N*GIFAQTCSTCLEGPYRKDSSCAHPCRAIDRA*EPRIPSPCSLKAITHATGSKIGSSRSCWNWGTEYYPVGMKTHIECPDIFF*KYNSP
Ga0134093_1066714	Ga0134093_10667141	F105007	CLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEE
Ga0134093_1067261	Ga0134093_10672612	F003852	MSTVYNPESEIMAEIERLELEVRDTRRRLENAKNDADRKVLNKQIDELKAQIE
Ga0134093_1079014	Ga0134093_10790141	F004472	VDLGPFGCLTELGAKRAELVQKFVPRSRVGFFRNEGTRSTPLDSKLMFSCVSYSLGAFG
Ga0134093_1079788	Ga0134093_10797882	F101010	MILFNNVYATVWEIEDKGNFVKGRISTSEKNKEGKYVNSYWFATFVGKAKEPALALSAKDRIKITSGKISNTITGEGKDKKSFVNVVIFDFENLSNSQIDSQMDDLPF*
Ga0134093_1084963	Ga0134093_10849631	F001938	MVTCDNCGTGQECDSWAEVIDFMNEEGWRKKLFDGEWKHFCPECVEVKEP*
Ga0134093_1085033	Ga0134093_10850331	F093153	HLEPFRYCTRLGAKWANLVQLMQEFVPQSLIRISRNGCSRSTQLDSKLMFSCVSFCLGAFGTIMLLHKLDAKHSKLVQLMQKFMPRCLIRNFRNERSRSTLLDHKLIFRCISFRLGAFGTISLLHETCCKMRQTGAINVKVRATKLSRNFS*
Ga0134093_1085223	Ga0134093_10852231	F004718	MFHYYMKLGAKRVELVQLMHKFVP*SRFGIFRNECIRRTLFDPKLM
Ga0134093_1088209	Ga0134093_10882092	F059695	VLARLKGPFDVVPQLAYSKTIAKSDKKPSRHFIRSEAFVNEKVIYRKGQSNRANKVLEIGLWVSYTFLA*
Ga0134093_1092584	Ga0134093_10925841	F010244	LPAEAGGEWLEMEVKRTMAHKVKFTHSDKSHAHITSAKIREGRVVYRHPKEYFVVLEFQGVGGKFREAFWPENVEKVG*
Ga0134093_1093137	Ga0134093_10931371	F000330	VDRVRSLRKILTRLRGTNFCPSSARFALSFVRQPNGPECSQIVRNAPKRQFRVQRGGSGAFVVKNSDVTSW
Ga0134093_1093640	Ga0134093_10936401	F017083	ENVFKVIGCSCYTCLPRTALAAAQTAPKMAAPGTGTGAPQMDQRLLTNTWPKQCTINKHTSKY*