3300010285: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 2_5_20_6_A2 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010285
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121361 | Gp0153725 | Ga0134091
• Sample Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 2_5_20_6_A2 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 273937062
• Sequencing Scaffolds: 41
• Novel Protein Genes: 42
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
Not Available	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Thermotalea → Thermotalea metallivorans	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000412	Metagenome / Metatranscriptome	1169	Y
F001938	Metagenome / Metatranscriptome	614	Y
F010244	Metagenome / Metatranscriptome	306	Y
F019116	Metagenome / Metatranscriptome	231	Y
F020859	Metagenome / Metatranscriptome	221	Y
F021959	Metagenome / Metatranscriptome	216	Y
F038199	Metagenome	166	Y
F042860	Metagenome / Metatranscriptome	157	Y
F059780	Metagenome	133	Y
F063614	Metagenome / Metatranscriptome	129	Y
F069582	Metagenome / Metatranscriptome	123	N
F075996	Metagenome / Metatranscriptome	118	N
F079533	Metagenome / Metatranscriptome	115	N
F087072	Metagenome / Metatranscriptome	110	Y
F088752	Metagenome / Metatranscriptome	109	N
F089691	Metagenome / Metatranscriptome	108	Y
F091897	Metagenome / Metatranscriptome	107	Y
F093744	Metagenome / Metatranscriptome	106	Y
F099151	Metagenome / Metatranscriptome	103	N
F101010	Metagenome / Metatranscriptome	102	N
F103108	Metagenome / Metatranscriptome	101	N
F105007	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134091_1000373	All Organisms → cellular organisms → Bacteria	42509
Ga0134091_1001108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	22230
Ga0134091_1002164	All Organisms → cellular organisms → Bacteria	13892
Ga0134091_1003008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10673
Ga0134091_1007916	All Organisms → Viruses → Predicted Viral	4814
Ga0134091_1008917	All Organisms → Viruses → Predicted Viral	4310
Ga0134091_1012641	All Organisms → Viruses → Predicted Viral	3099
Ga0134091_1014325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2744
Ga0134091_1014511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2708
Ga0134091_1014732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2665
Ga0134091_1015256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2580
Ga0134091_1015685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2513
Ga0134091_1021368	Not Available	1860
Ga0134091_1022278	All Organisms → cellular organisms → Bacteria	1789
Ga0134091_1022920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1742
Ga0134091_1023812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1679
Ga0134091_1025024	All Organisms → cellular organisms → Bacteria	1606
Ga0134091_1025061	All Organisms → Viruses → Predicted Viral	1604
Ga0134091_1030880	Not Available	1324
Ga0134091_1031580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1298
Ga0134091_1031595	All Organisms → Viruses → Predicted Viral	1297
Ga0134091_1032531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1263
Ga0134091_1032609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1261
Ga0134091_1034501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1199
Ga0134091_1037230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1121
Ga0134091_1038738	All Organisms → Viruses → Predicted Viral	1081
Ga0134091_1040401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1042
Ga0134091_1043116	Not Available	986
Ga0134091_1043222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	985
Ga0134091_1044224	All Organisms → cellular organisms → Bacteria	965
Ga0134091_1052761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	835
Ga0134091_1054516	Not Available	812
Ga0134091_1060419	Not Available	746
Ga0134091_1064321	Not Available	710
Ga0134091_1067226	Not Available	685
Ga0134091_1070191	Not Available	663
Ga0134091_1081665	Not Available	590
Ga0134091_1096105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Thermotalea → Thermotalea metallivorans	521
Ga0134091_1099620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Thermotalea → Thermotalea metallivorans	507
Ga0134091_1100675	Not Available	503
Ga0134091_1100939	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134091_1000373	Ga0134091_100037317	F020859	MKKIIAKEVNPNHVDFSYYFDDDGLKSAGGENCAVYIVPGDRRRYGGFNIEEYEEIEEKAKAIIDGFRDVSDKWTNGYTTYKEVMEDNAIPYTSRRCHLLKEWTEYANPYDPGFIAEFLTITTGEKWEVKSFTGYSQGDYCDVVYCTKHYTPEHIDEIGKFWLGCGTEFCIDDCYGYYVPDTIRWQEGETLRKYLADCYGCKPDELEIYLYDGEHIVTDYKLMD*
Ga0134091_1001108	Ga0134091_100110837	F059780	MFTKNIRNKGENKMYLIGIKNGVHPLGNTGTLITRYKAPYKIREIAQRFATMYSLTEVYALRSYPQKLCELTGKKFVEYVRLHGIRYV*
Ga0134091_1002164	Ga0134091_100216419	F063614	MNRRLQKMTYARLRITIDTLVKTGLEKANVLGIEDAQNDLWQIYKMCEELLRFWEDEITDDQDYELEEIIAELPLLQQV*
Ga0134091_1003008	Ga0134091_100300813	F101010	MFRIENAYATVWSVEDKGNYVKGRISTSEKNKEGKYVNSNWFVTFVGKAKEPALALSTKDRIKITSGKISNTTTGEGKDKKSFVNVVIFDFENLSNSQNNFQPNESMDDLPF*
Ga0134091_1007916	Ga0134091_10079169	F091897	MIGSSMNSFPNTQYQCCKCGKDLGNKYSRLKGKKQPDVNIIKGKQYCNKCADKYWND*
Ga0134091_1008917	Ga0134091_10089175	F091897	MIGSSMSCFPNTQYQCCKCGKKLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM*
Ga0134091_1012641	Ga0134091_10126418	F038199	GDIMEYTQAEFLQLIQQYNSTDRKVIKANLKRIMDIYGIKPADIISLGYSPRNVYAWTNKSAKNIPLFEQALNIAVKFNFDITEFLK*
Ga0134091_1014325	Ga0134091_10143259	F038199	MEYTQAEFLQIIKQYNNTDRKVIKANLKRIMHIYGIKPADIISLGYSPRNVYAWTNKSTKNIPLFEQALNIAVNFNFSITEFLK*
Ga0134091_1014511	Ga0134091_10145113	F021959	MAEQEVARLQEQIKTLFSDVDELKTDVKEIKSQLANRLPLWATMLISALTGVIGWLIR*
Ga0134091_1014732	Ga0134091_10147325	F001938	MIEKIYKSKYMAICDNCGTGQECDSWADVIDFMNEEGWKKRLVDGEFKHYCPECQDRIRREKQGTRHMT*
Ga0134091_1015256	Ga0134091_10152564	F088752	MKGLQSVYNQITTILKENNVLMNITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDE*
Ga0134091_1015685	Ga0134091_10156852	F093744	MGFKIGDRVEVNYPVDDFQGHIGIVKKIITDTELIPGKTVVICYWAFLDKEIAFYESSLNLI*
Ga0134091_1019286	Ga0134091_10192861	F105007	NYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEEEWVDMIR*
Ga0134091_1021368	Ga0134091_10213681	F075996	NSATGQAVGILLPFWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVPLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARRDGLYVNGKRAGNFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSDLEKILDGLSEHDDETLLR*
Ga0134091_1022278	Ga0134091_10222785	F010244	MTHKVKFTHSDKSRAHIGRAKVREGKEVYRHPEGRYIVLEFQGQSGKFREAFWPEEVVKDKLFL*
Ga0134091_1022920	Ga0134091_10229204	F093744	MNAQEGGCEMGLKIGDRVEVSYPVDDFPGHIGIVKEIKESVEFPGSKIVVCFWPFLGKEIGFFEDSLDLV*
Ga0134091_1023812	Ga0134091_10238123	F010244	MTHKVKFTHSDKSHAHINRAEVREGKEVYRHPKNYFIVIEFQGAGGKFREAFWPEQILDEIMKVG*
Ga0134091_1025024	Ga0134091_10250243	F010244	RGMEAFLPGMSGGQRTMTHKVKFTHSDKSRAHINRAKVREGKEVYRHPRGHFVVLEFQGESGKFREAFWPEEVKVG*
Ga0134091_1025061	Ga0134091_10250612	F099151	MRFREEIYKENGEIIKKFYIDDKEVTQDVYFNLTDELYENTKLKQDDHNEEICNCEECQYLLELINEIRQSSDSEALAILKDEIEFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELENLYENGSLHEYNEDS*
Ga0134091_1030880	Ga0134091_10308802	F020859	MRKIIAKEVNPSHVDFSYYFDDDGLKSVGGENCAVYIIPADRRGYNGFNMEEYLEIEEKAEAIIDGFRNVSDKYANFKEVMEYNGIPYTSRKCHLLRKWAEYANPYDTSDIAAFLTITTGEEWAVKAFTGYSQGDYCEVVYCINHYTPEHINEIGKFWLGCGTEFCIDGCYGYYVPDTIRWEEGETLRNYLAELYGCKPEELEIYLYDGEHVVTDYKLMD*
Ga0134091_1031580	Ga0134091_10315804	F021959	EIVSEQDIARLQEQIKTLFGDVNELKEDVKEIKQQLANRLPLWATMLISALTGVIGWLIR
Ga0134091_1031595	Ga0134091_10315953	F087072	MKSRVFTKRVFSLELSEEELGIIAGALYCADSVDVKCFVDKYKYPCDGYNFDEIAECKEKLSEEINKLIENR*
Ga0134091_1032531	Ga0134091_10325312	F019116	SIMLSARDKRLLELLAKKEARSQTAEIEYLIRRRAEELKIEEP*
Ga0134091_1032609	Ga0134091_10326092	F087072	MKSRVFTKRIFSLELSEEELGIIAGALYCANSVDVKCFVDKYKYPCDGYNFDEIAECKEKLSEEINKLIENR*
Ga0134091_1034501	Ga0134091_10345013	F042860	LAGLTREEIMKRIKIEDARIANADRNIEGLILQKNKSLDEQARLFALLEALPDKEPAEETGA*
Ga0134091_1037230	Ga0134091_10372301	F101010	MFGGFYMFIIRDGYATVWSVEDKGNFVRGRISTSEKDKDGKYINSNWFAIFVGKAKEPALALSTKDRIKIISGKISNTTTGEGEDRKSFVNVVIFDFENLSNSQ
Ga0134091_1038738	Ga0134091_10387381	F089691	NLGGYHMEKNIKYIIREVPPEQSDFSFYFDDDGLTEKGGDYCCNLFIVAQSRNSSGFNEKEYQNIQNEIENLLEMYSDIVNKSSYAQYSSVGAMLFDLGLINSIHNTRRIKEITEWLKACLTWGNTSQTRTLAEYEPEETAAEYLTFKTGKKWATDSAYGYSQGDYVKMIYCPEYYKDGVKHYGEIWLGAGKEFYTIELDENGEEINTCYGYIIADCQARNDEDYKKLVCEWAGIPEDETRLEMIDGYKTVTQYTYRTV*
Ga0134091_1040401	Ga0134091_10404011	F001938	TCDNCGTGQECDSWSDVMDFMNYEGWKKRLVDGEWKHYCPECQENEQIIERRVEKDGK*
Ga0134091_1043116	Ga0134091_10431162	F038199	MEYTQAEFLQLIQQYNSTDRSIIKANLKRIMDIYNIKPANIISLGYSPRNVYAWTNKSTKNIPLFEQALYISTRFNFSITEFIK*
Ga0134091_1043222	Ga0134091_10432222	F063614	MSYVRLKFTIQTLVDTALEKVNVLGVEDAQNDSCQIYDICQELLRFWEDELTEERIDELEEIIAELPLLQRV*
Ga0134091_1044224	Ga0134091_10442242	F010244	MTYKVKFTNSDKSRAHITSAKIREGREVYRHPRGRFVVLEFEGESGKFREAFWPEQVEKAI*
Ga0134091_1052761	Ga0134091_10527611	F001938	NKYMVTCDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEFKHYCPECQEG*
Ga0134091_1054516	Ga0134091_10545162	F038199	MQYTQAEFLQIIQQYNSTDRKIIKANLKHIMDIYNIKPADIISLGYSPRNVYAWTNKSTNNIPLFGQALHIAVHFDFSITEFLK*
Ga0134091_1060419	Ga0134091_10604191	F069582	IACLLSVINIRTTDGVLIDIITSCETPSVLMNLLRSRCVVVLVKFLKVLVTCRKYGTRQA
Ga0134091_1064321	Ga0134091_10643211	F079533	VSTQLVLNKYNTNYEALRLADSTALAFKCWQNFIKAIYYELMKPLTQLHSN
Ga0134091_1067226	Ga0134091_10672261	F001938	MIEKIYKNKYMATCDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEFKHY
Ga0134091_1070191	Ga0134091_10701911	F099151	MKFREETYKENGRIIKKYFIDDKEVTQDVFFKLTDELYENTKFIQDEHPDEICNCDDCQYLLDLVREIKIASDSEALDILKNEIDFRVREAYIEGQHVLANELGNSLLKHAVKLEDELDN
Ga0134091_1081665	Ga0134091_10816651	F103108	MEKTELIIPFTKKLAEAAGLAKETEKGEKFFRCLRMPGYFPPKGDIESFAERLCKLLLEKHEEALLYTENGLRRVLEDFPAAEEILEKLSSSWEEDAPDAYAVVSRSDDEWAVLFGYEDGVEAVLCKKGRTVRVGADE
Ga0134091_1096105	Ga0134091_10961051	F001938	MIEKIYKNKYMAICDNCGEGQEYDSWTDVIEFMREEGWKKKLVDGEWKHYCPECQESGVKQDAAI*
Ga0134091_1099620	Ga0134091_10996203	F001938	MIEKIYKNKRMAICDNCGEGQECDSWAEVIDFMREEGWRKRLIDGEWKHFCPECRGVKEP
Ga0134091_1100675	Ga0134091_11006751	F000412	MSGYSI*VFIPTGKYSRTCWNRGREYYPVGMKTPIEYRDIFF*KYNSPYHIEMGTYILIDLL*AGGSVAPAQPTSLR*N*GIFTQTCSTCLEGPHWKDSSDAHPCRAIDRA*EPVIPSPCSLKAITHATGSKIGSSQYRWNRST*
Ga0134091_1100939	Ga0134091_11009392	F001938	MIEKIYKNKYMAICDNCGEGQECDSWTDVLDFMNTEGWKKRLVDGEWKHFCPECQESEGEEG*