2044078008: Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16

Overview

Basic Information

• IMG/M Taxon OID: 2044078008
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045767 | Gp0051664 | Ga0025747
• Sample Name: Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49174050
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mixed Alcohol Bioreactor Microbial Communities From Texas A&M University
• Type: Engineered
• Taxonomy: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Mixed Alcohol Bioreactor → Mixed Alcohol Bioreactor Microbial Communities From Texas A&M University

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: Texas A and M University College Station, Texas, USA
• Coordinates
  • Lat. (^o): 30.620833
  • Long. (^o): -96.341111
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088752	Metagenome / Metatranscriptome	109	N
F091897	Metagenome / Metatranscriptome	107	Y
F101010	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
2044874655	Not Available	760
2044875221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium	505
2044924125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10216
2044943897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3527

Sequences

Scaffold ID	Protein ID	Family	Sequence
2044874655	2044913172	F091897	MIGSSIPTFLNIQYQCCKCGKDLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND
2044875221	2044913872	F088752	MKELQSVYNQITNILKENNVLINITPPRPYLIKKDDEERINAEAESLLKKGKIKEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDK
2044924125	2044972271	F088752	MKGLQSVYDQIINILKENNVLINITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDE
2044943897	2044995396	F101010	MFRIENAYATVWSVEDKGNYVKGRISTSEKNKEGKYVNSNWFVTFVGKAKEPALALSTKDRIKITSGKISNTTTGEGKDKKSYLNVVIFDFENMSNSQTDNQMDDLPF