3300025534: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025534
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088361 | Ga0207747
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 218641455
• Sequencing Scaffolds: 15
• Novel Protein Genes: 20
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Predicted Viral	2
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000617	Metagenome	982	Y
F001417	Metagenome / Metatranscriptome	699	Y
F010514	Metagenome	302	Y
F010645	Metagenome / Metatranscriptome	301	Y
F025700	Metagenome / Metatranscriptome	200	Y
F038199	Metagenome	166	Y
F038929	Metagenome / Metatranscriptome	164	Y
F063614	Metagenome / Metatranscriptome	129	Y
F087072	Metagenome / Metatranscriptome	110	Y
F087914	Metagenome / Metatranscriptome	110	N
F088752	Metagenome / Metatranscriptome	109	N
F091897	Metagenome / Metatranscriptome	107	Y
F099151	Metagenome / Metatranscriptome	103	N
F101010	Metagenome / Metatranscriptome	102	N
F105011	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207747_1000200	All Organisms → cellular organisms → Bacteria	75162
Ga0207747_1000313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	59603
Ga0207747_1000469	All Organisms → cellular organisms → Bacteria	45972
Ga0207747_1003350	All Organisms → cellular organisms → Bacteria	7751
Ga0207747_1005921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4444
Ga0207747_1005981	All Organisms → Viruses → Predicted Viral	4396
Ga0207747_1009488	All Organisms → Viruses → Predicted Viral	2757
Ga0207747_1020010	Not Available	1460
Ga0207747_1031813	All Organisms → cellular organisms → Bacteria → Proteobacteria	1038
Ga0207747_1041793	All Organisms → cellular organisms → Bacteria → Proteobacteria	855
Ga0207747_1059239	Not Available	660
Ga0207747_1063272	Not Available	629
Ga0207747_1074276	Not Available	555
Ga0207747_1074857	All Organisms → cellular organisms → Bacteria → Proteobacteria	552
Ga0207747_1084862	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207747_1000200	Ga0207747_10002002	F087072	MKATVFTKRIFSLELTEEELGIIAGALYFANNEDIKYFVDKYKYPCSGYSFDEVAELQEKLSEEVNKLIENR
Ga0207747_1000200	Ga0207747_100020036	F091897	MIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND
Ga0207747_1000200	Ga0207747_100020046	F038199	MIQYTQAEFLQLLQQYNSTDRSIIKANLKRIMDIYNIKPADIISLGYSHRNVYAWTNKSTKNIPLFEQALYISTRFNFSITEFIK
Ga0207747_1000200	Ga0207747_100020054	F063614	MTYTRLRITIDTLVKTGLEKVNVLGVEESQDDLWQIHELCNELMAFWDSELTEERIDELEEIIAELPLLQRV
Ga0207747_1000200	Ga0207747_100020075	F099151	MRFREEIYKENGEIIKKFYIDDKEVTQDVYYNLTDELYENTKLKQEEHNDEICDCEECQYFLELINEIRNSSDKEALEILKSEIDFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELDDLYENGSLNEYNEDS
Ga0207747_1000313	Ga0207747_100031321	F010645	MYGAWYGEVLARERQERLLEEAQERRLARMVAGPGLRARAARWLFGLALLLERRETWRAVWERLEAPR
Ga0207747_1000469	Ga0207747_10004695	F000617	MVREVDLNRVEVPEGYEVLDATALARRLGIKRETVLVYLSRRNFKNIPRPNRKLAMGPVWYEASVREWERRRAGG
Ga0207747_1003350	Ga0207747_10033509	F101010	MFRIENAYATVWSVEDKGNYVKGRISTSEKNKEGKYVNSNWFVTFVGKAKEPALALSTKDRIKIISGKISNTTTGEGEDKKSYLNVVIFDFENMSNSQTDNQMDDLPF
Ga0207747_1005921	Ga0207747_10059214	F101010	MILFNNVYATVWEIEDKGNFVKGRISTSEKNKEGKYVNSYWFATFVGKAKEPALALSAKDRIKIASGKISNTTTGEGKDKKSFVNVVIFDFENLSNSQNNFQPNESMDDLPF
Ga0207747_1005981	Ga0207747_10059812	F087072	MKSKVFTKRMFSLELSEEELSIIAGALYCANSEDIKCFVDKYKYPCAGYNFDEIAELKDRLSEEINKIIESK
Ga0207747_1009488	Ga0207747_10094885	F088752	MEGLQNVYSQIINILKENNVLINITPSRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTNFYEE
Ga0207747_1020010	Ga0207747_10200102	F038199	MQYTQAEFLQLIQQYNSTDRKIIKANLKHIMDIYGIKPADIIALGYSSRNVYAWTNRSTSNIPLFEQALNIAVKFNFSITEFIK
Ga0207747_1031813	Ga0207747_10318132	F025700	MSRTPRRRKLLILENDRALRKELEAIFADLDVVCGEVSEQALVVLRR
Ga0207747_1041793	Ga0207747_10417931	F001417	FFLPVARAATLAGRPCEVQIVAMDGAQASAIHQALVSVQDAVTQMTFSSCDKDDVLELIERVENELHSPHPNLALMCTFLNSIARSLRAQPEAREACLAIEEAIEKAGMPSTWQSGI
Ga0207747_1059239	Ga0207747_10592392	F105011	MVLDLKIADIVDAHGVELADVVAAHEMKMDAMRVKLKKIRKYVISQEAWYHYAVGSIVTLVAILIAFVVGFKFFR
Ga0207747_1063272	Ga0207747_10632722	F099151	MKFREEIYKENGEIIKKYYIDDKEVTQDVYFNLTDELYENTKLKQDDHNEEICNCEECQYFLELINEIRQSSDSEALAILKDEIEFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELDNLYENGSLDEYNEDS
Ga0207747_1074276	Ga0207747_10742761	F010514	EICRKRENKTLVPNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGMRYAEKEKTKF
Ga0207747_1074857	Ga0207747_10748571	F087914	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAHKG
Ga0207747_1084862	Ga0207747_10848621	F038929	NYKTSSGLHFKTKRVRTGRKLENKKNFIPIRSNPTQVRKFKNKYKKIVKITKHHPGFISRRGRSGQAEK
Ga0207747_1084862	Ga0207747_10848622	F038929	MQKNSKNYKTSSELHFKTKRVRAGRKIENNKNFIPIRSNPTRVRKFKNKCKKILKITKHHPGFISRRNGSGQAEK