3300005730: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway

Overview

Basic Information

• IMG/M Taxon OID: 3300005730
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114887 | Gp0117115 | Ga0076946
• Sample Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway
• Sequencing Status: Permanent Draft
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 62069582
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	2
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mirobial Communities In Biogas Reactors
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038199	Metagenome	166	Y
F047640	Metagenome / Metatranscriptome	149	N
F057301	Metagenome / Metatranscriptome	136	N
F084123	Metagenome / Metatranscriptome	112	Y
F091897	Metagenome / Metatranscriptome	107	Y
F101009	Metagenome / Metatranscriptome	102	Y
F103106	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0076946_108162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1133
Ga0076946_109168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1155
Ga0076946_109268	All Organisms → cellular organisms → Bacteria	1157
Ga0076946_111022	Not Available	1198
Ga0076946_122964	Not Available	1647
Ga0076946_129194	Not Available	2243
Ga0076946_131131	All Organisms → cellular organisms → Bacteria	2622

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0076946_108162	Ga0076946_1081622	F084123	LSLVNSERLWLIRQFAETALDLEAIKEDIRHEYHAWFAEPTTSPRLYKDDETFSKVIRIVDLEARVLAKVADEHRPLAIQVFRLVQQWLKQLDATTRGYIFEGGSPRQQFIDRIAQYVYTIYQTDT*
Ga0076946_109168	Ga0076946_1091683	F103106	MSDIKKVIEGLELIEIVIPSYKHARRKGITDEEAEKLVNQAIEQSIAILETIVARDK*
Ga0076946_109268	Ga0076946_1092681	F101009	MMELLKCAQCGDRPGLLVTVADRAAGTNINLCYECYKKYARHVKNGKAAERVTVVYEEGVSRR*
Ga0076946_111022	Ga0076946_1110222	F057301	MNDSILGMPTPFDNPRDNDDEFSVDLSEAPTGGGYLIPDGDYPAVLVDLRKGFSKSGNPQWVWTFAIVSGEHAGKEFPLYTAITPSALWKVAETVEALGLGKGGTVSKFTKSEAVSRRCIISIRKDTYNGQERSSIAKVLPYPDGPGPVTGFNSKKASNGSVPF*
Ga0076946_122964	Ga0076946_1229644	F038199	MIQYTQAEFLQIIKQYNSTDRKVIKANLKRIMDIYNIKPADIIALGYSHRNVYAWTNKSTNNIPMFEQALHIAVYFDFSITEFLK*
Ga0076946_129194	Ga0076946_1291943	F047640	MLSFEIDIESNLQEKQENTLKQEVTMYVQAITNIYRNKPTKKPQIGSLPLILDKYALERIILLYQLLQLGVLPAYKLILNILRVYTLEADTISDNTKQEILEIIHRHAII*
Ga0076946_131131	Ga0076946_1311312	F091897	MIGSSVPTYPIKKYRCCICDRNLGDSLSRLKGKKQPCVNIINGKCYCNKCAEEFWEK*