3300010273: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 7_21_20_110_A3 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010273
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121361 | Gp0153730 | Ga0134096
• Sample Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 7_21_20_110_A3 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 246696997
• Sequencing Scaffolds: 15
• Novel Protein Genes: 23
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Brevibacillus → Brevibacillus laterosporus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F001938	Metagenome / Metatranscriptome	614	Y
F010244	Metagenome / Metatranscriptome	306	Y
F020508	Metagenome / Metatranscriptome	223	Y
F020859	Metagenome / Metatranscriptome	221	Y
F029451	Metagenome / Metatranscriptome	188	N
F038199	Metagenome	166	Y
F062734	Metagenome / Metatranscriptome	130	N
F063614	Metagenome / Metatranscriptome	129	Y
F087072	Metagenome / Metatranscriptome	110	Y
F091897	Metagenome / Metatranscriptome	107	Y
F093744	Metagenome / Metatranscriptome	106	Y
F099151	Metagenome / Metatranscriptome	103	N
F101010	Metagenome / Metatranscriptome	102	N
F105007	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134096_1000342	All Organisms → cellular organisms → Bacteria	54387
Ga0134096_1000731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	32590
Ga0134096_1002388	Not Available	12381
Ga0134096_1004052	All Organisms → cellular organisms → Bacteria	7766
Ga0134096_1005731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5500
Ga0134096_1008361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3691
Ga0134096_1020585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1523
Ga0134096_1020662	All Organisms → cellular organisms → Bacteria	1518
Ga0134096_1022281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Brevibacillus → Brevibacillus laterosporus	1422
Ga0134096_1022331	All Organisms → cellular organisms → Bacteria	1419
Ga0134096_1025890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1248
Ga0134096_1033477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1011
Ga0134096_1042901	Not Available	835
Ga0134096_1048607	Not Available	760
Ga0134096_1059367	Not Available	654

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134096_1000342	Ga0134096_100034211	F020859	MKKIIAKEVHPSNVDFRHYFDDDGLKSVGGENCAVYIIPADRGRYSGFNLEEYEEIEEMADSLIETFEEVSPKNEYYPTYKEAMLSHNIDYTSRRCHLLKEWAEHANPYDTRDIAAFLTITTGEEWNVRAFRGYSQGDYCEVVYCKAHYSEEHITEIGKFWLGCGTEFCIDDCYGYYVPDTIRWQEGETLRKYLADCYGCKPDELEIYLYDGEHIVADYRLMD*
Ga0134096_1000731	Ga0134096_100073118	F093744	MGFKIGDRVEVNYPVDDFQGHVGIVKKIITDTELIPGKTLVICYWAFLDKEIAFYESSLDLI*
Ga0134096_1000731	Ga0134096_100073123	F091897	MIGSSVSSFPNTQYQCCECGKYLGDKYSRLKGKKQPNVNIINGKQYCNKCADKYWND*
Ga0134096_1000731	Ga0134096_100073130	F038199	MEYTQAQFLQLIQQYNSTDRKVIKANLKRIMDIYNIKPADIISLGYSPCNVYAWTNKGTKNIPMFNQALNIAVEFHFDIKEFLRNINIDNVKSP*
Ga0134096_1000731	Ga0134096_100073140	F063614	MTYRKLYITIDTLVETGLETVNVLGVEESQADLWQIYEICQELMAFWDSELTEDRIDELEEIIAELPLLKRA*
Ga0134096_1000731	Ga0134096_100073162	F099151	MRFREEIYKENGEIIKKYYIDDKEVTQDVYFNLTDELYENTKLKQDDHNEEICNCEECQYFLELINKIRQSPDSEALAILKDEIEFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELENLYENGSLDEYNEDG*
Ga0134096_1002388	Ga0134096_100238817	F087072	MKSTVFTKRVFLLEISEEELGIIAGALYCANSEDIKCFVDQYKYPCADYSLDEVAELEEKLSEEVNKLIEGKKE*
Ga0134096_1002388	Ga0134096_10023883	F101010	MFRIENAYATVWSVEDKGNYVKGRISTSEKNKEGKYVNSHWFVTFVGKAKEPALALSTKDRIKITSGKISNTTTGEGKDKKSFVNVVIFDFENLSNSQNESNDNFDDLPF*
Ga0134096_1004052	Ga0134096_10040527	F001564	LIHWALRRDELCDPGLCPDASDDGGRCDNCPLDRLDAAQSSEAGLLLRRALDLRAALKLGVRIGLDEVRADEFAALVVLEEEQEKLDRERLDASRP*
Ga0134096_1005731	Ga0134096_10057313	F001938	MVTCDNCGTGQECDSWAEVIDFMNEEGWKKRLVDEEWKHFCPECVEVKEP*
Ga0134096_1005731	Ga0134096_10057314	F010244	MTYKVKFTHSDKSHAHITSAKIREGREVYRNPRERFVVLEFEGESGKFREAFWTEDIVKVGLFYG*
Ga0134096_1008361	Ga0134096_10083613	F001938	MIEKIYKNKRMAICDNCGTGQECDSWAEVIDFMNEEGWRKKLVDGEWKHYCPECKEAKEP
Ga0134096_1008361	Ga0134096_10083614	F010244	MTHKVKFTHSDKSRANITSAKIREGREVYRHPRGRFVVLEFEGKSGKFREAFWPEEIVKVGLFYG*
Ga0134096_1020585	Ga0134096_10205852	F099151	MKFREETYKENGRIIKKYFIDDKEVTQDVFFKLTDELYENTKFKQDEHPNAICTCDDCQYLLDLVREIKIASDSEALDILKNEIDFRVQEAYLEGQRVLANELGNYFLKYTVQLENEIDSLYENGTLDDCEEGDI*
Ga0134096_1020662	Ga0134096_10206622	F001938	MIEKIYKNKYMVICDNCGDGYECDSWADAMEFMREEGWKKRLVDGEFKHYCPECQEGLR*
Ga0134096_1022281	Ga0134096_10222812	F001938	MIEKIYKSKYMTICDNCGTGQECDSWAEVIDFMNEEGWKKKLFDGEWKHFCPERKESEVEQDEANNQV*
Ga0134096_1022331	Ga0134096_10223313	F001564	LCDPRLCPDAPEGGGRCDHCPLDKLDAAQSSETGLLIRRALDLRAALKLGVKVSLDEVRADEFYAMLILEEEKEQLDRERVNGDRR*
Ga0134096_1025890	Ga0134096_10258901	F062734	VIITYNPVTALTITGEPSGDQIRWEITDGEPPYTVFVNGVEIVTDYPGTVVLTDSEPGKQYTAVVMDNESVADATVIGEYYTYPLWAWLLFAALLACLVVSIWLPYAAFGAAIAGGFLLLLIAPDPDYAPYLRIFAGAAFIVGLGGLAGRMQS*
Ga0134096_1033477	Ga0134096_10334771	F010244	MTHKVKFTHSNKSRARINRAKVREGKEVYRHPRGYFVVLEFEGESGKFREAFWPE
Ga0134096_1042901	Ga0134096_10429012	F029451	STAGQPSIIEALLSTVDSIFTNNRMLQRSRLSPRNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYGRYDNRVLTAICEGVLSGRISLDGKSRDEIIRIFQAVGSSVQEKPAGKSGILGRFDY*
Ga0134096_1048607	Ga0134096_10486072	F029451	STAGQPSIIEALLSTVDSIFTNNRMLQRSRLSPRNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYGRYDNRVLTAICEGVLSGRISLDGKSRDEIIRIFQAVGSTVQEEPAGKSGILGRFDY*
Ga0134096_1052125	Ga0134096_10521251	F105007	SNGRRGVFMHTVPLGSTEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVSNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSNRAGYAYGYLDELSVFADEKDAERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFP
Ga0134096_1059367	Ga0134096_10593671	F020508	ACAAVLLLFIGYRLGRWIATAQSQALLEQKERDLFTAQKGFKQLYETELANLRARNAELAQKNEHLAQKVEEYRKKAAGFGGLFSSGGKRADAMYALLLENEALEEALHRQNEKLSQERTDALKESLRNTGYRRVLMSQLLNDDRIKNYVAEIINDESRLPPPNSARQSLPHGEQE*