3300010428: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 14_58_20_212_A1 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010428
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121361 | Gp0153737 | Ga0134103
• Sample Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 14_58_20_212_A1 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 271588846
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003438	Metagenome / Metatranscriptome	486	Y
F019116	Metagenome / Metatranscriptome	231	Y
F053045	Metagenome / Metatranscriptome	141	Y
F075996	Metagenome / Metatranscriptome	118	N
F091897	Metagenome / Metatranscriptome	107	Y
F105007	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134103_1003015	Not Available	11873
Ga0134103_1048535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	832
Ga0134103_1069575	Not Available	625
Ga0134103_1081836	Not Available	551
Ga0134103_1086271	Not Available	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134103_1003015	Ga0134103_100301513	F091897	MIGSTIASYPNRAYICDNCGKHLGDRYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0134103_1044188	Ga0134103_10441881	F105007	ISYRESDAVFRIAQRFFSRKSYLSLKDVVPKWYEKVKREILNGRRGVFMHTVPLGSTEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVSNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSNRAGYAYGYLDELSVFADEKDAERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDMIR*
Ga0134103_1048535	Ga0134103_10485352	F019116	MAMKKKTSIMLSARDKRLLELLAKKEARSQTAEIEYLIRRRAEELKIEEP*
Ga0134103_1049432	Ga0134103_10494321	F105007	RKSYLSLKDVVPKWYEKVKREISNGRRGVFMHTVPLGSTEDFYRNLGTAGDPANLASCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEE
Ga0134103_1069575	Ga0134103_10695751	F003438	IKTVPVVSHIFDVSSSTGRGIEGYLTCWKDELRNHTLGTKAQNMHQLRVLGAK*
Ga0134103_1081836	Ga0134103_10818361	F053045	LALIAPIHSILHRVSCSYEMIPNAPKHYEIHQNLSLGANGVDQVRLLGKITT*
Ga0134103_1086271	Ga0134103_10862711	F075996	QVMKEGRLFRFVMLVGEPEEEVPLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARRDGLYVNGKRAGSFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSDLEK