3300033985: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-3

Overview

Basic Information

• IMG/M Taxon OID: 3300033985
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324325 | Ga0310135
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 156479708
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Syntrophia → Syntrophales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Alt. (m): N/A
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F029285	Metagenome / Metatranscriptome	189	Y
F038199	Metagenome	166	Y
F063614	Metagenome / Metatranscriptome	129	Y
F066897	Metagenome / Metatranscriptome	126	Y
F077200	Metagenome / Metatranscriptome	117	N
F082560	Metagenome	113	N
F087072	Metagenome / Metatranscriptome	110	Y
F088079	Metagenome / Metatranscriptome	109	N
F091897	Metagenome / Metatranscriptome	107	Y
F099151	Metagenome / Metatranscriptome	103	N
F103496	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310135_000614	Not Available	23694
Ga0310135_000964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	16619
Ga0310135_002463	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	7770
Ga0310135_002858	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum	6919
Ga0310135_002961	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6725
Ga0310135_004283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5018
Ga0310135_004361	All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Syntrophia → Syntrophales	4933
Ga0310135_008050	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3046
Ga0310135_017229	All Organisms → Viruses → Predicted Viral	1564
Ga0310135_017773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	1521
Ga0310135_020367	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1346
Ga0310135_022486	Not Available	1226
Ga0310135_029625	Not Available	941
Ga0310135_032700	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	853
Ga0310135_035792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	782
Ga0310135_043384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	646
Ga0310135_048698	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	578

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310135_000614	Ga0310135_000614_2076_2393	F066897	MSSKWFWLILIAVILFSAIFLWYNHTSTQKALIKAQETIEETKQALRENQDALQKIDEITQKLQDVTRMAKKAGDKRVEEIKYISDDDFLNIANEYSALMVERVE
Ga0310135_000614	Ga0310135_000614_2390_2623	F103496	MPFNDKIRKLPLTKLIALCFTIFTCVLIVLDVTSLCPLTERSADLLKWLGSTIIVGYFGKSSYEHKIDTTAGRKVNS
Ga0310135_000614	Ga0310135_000614_451_789	F082560	VSEKLIVKKIQEWFKAKGGVCHKVHGGPMSAGFPDIIGCIRGHTWVVEVKVPGAKPRVPKAKRNEAPQEMQEWLAKGATMLQAKTLYDWQNAGAVALVATSVEDMEQKFKEG
Ga0310135_000964	Ga0310135_000964_1778_2182	F099151	MRFREETFKENGQIIKKYYIDDKEVSQDVYYSLTDELYENTKLKQEEHTEEICDCEECQYYIDLIHAIKESDYSEALEILRQEIEFRVQEAYMEGQHVLANELGNSLLKHAVKLEDELENLYENGSFDEYNEDG
Ga0310135_002463	Ga0310135_002463_43_303	F088079	MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNVFSTK
Ga0310135_002858	Ga0310135_002858_59_319	F088079	MLTEKAILPENVPFRNIDGAIGGQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDIFIHICEIYKVDITFFKSNVVSTK
Ga0310135_002961	Ga0310135_002961_6413_6673	F088079	MLTEKAIWPENVPFRSIDGAIGGQNCSVYFVESMIVGQSCTFCTSILGNLEPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310135_004283	Ga0310135_004283_1768_1941	F091897	MIGSSMNSFPNTQYQCCKCGKNLGNKYSRLKGKKQPDVNIINGKQYCNKCADKHWND
Ga0310135_004361	Ga0310135_004361_83_436	F022008	MTVSEIEMLREALADLSKQVQALSEDNRTSFGRIYDRLTKIETQMSERECQFKKFEKILDNHETRIRTVEGELRTLRDVPERLWRVSMSNAKLTGMIAAAGGMGGLVATLIVQILGD
Ga0310135_008050	Ga0310135_008050_1882_2142	F088079	MLTEKAIWLEKVPFRNVDGAIGGQNCPVYFVESMIVGQSCTFCTSRLGKLATNPYRMLTRLDVFIHICEIYKVDITFIKSNMVSTK
Ga0310135_017229	Ga0310135_017229_288_518	F087072	MRWSMKSRVFTKRMFSLELSEEELSIIAGALYCANNEDIICFVDKYKYPCSGYSFDEVAELQEKLSEEINKLIESK
Ga0310135_017773	Ga0310135_017773_346_603	F038199	MMQYTQAEFLQIIKQYNSTDRKIIKANLKHIMDIYGIKPADIIALGYSSRNVYAWTNRSTSNIPLFEQALNIAVKFNFSITEFLK
Ga0310135_020367	Ga0310135_020367_450_710	F088079	MLTEKAIWPENVPFRSIDGAIGGQNCSVYFVESMIVGQNCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFIKSNMVSTK
Ga0310135_022486	Ga0310135_022486_152_379	F029285	MAKANIMKNNVDYSKYECPYSHLGKESGHELNGPDGYQDIYSVWCTCGFRGPVFYLDPNELGLKLKKETDITTCK
Ga0310135_029625	Ga0310135_029625_309_941	F077200	MMNKFTVIDVKTQPNIERIKEYAQRYGMTLEEAIERKRIGGDYFPIRDQEIVSVGILNFVHNNEDKASIMATVFTGEEKKVLDATAEKLEKIVKATGKPFFITGDGRKYALELLAGRAMAYMIEAKKEDQEISPELQNMIRIITNPKHGYLKPFDTRDSIDMQAVFGLGNGVIPLPKELQYKNEDLPRLAEETKRILLDMTKNYACYIEAQ
Ga0310135_032700	Ga0310135_032700_143_403	F088079	MLTEKAIWLENVPFRNVDGAIGGQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSKVVSTK
Ga0310135_035792	Ga0310135_035792_339_557	F063614	MSYVRLKLTIDTLVKTGLEKVNVLGVDEAQNDLWQIYEICQELMAFWDSELTEERIDELEEIMAELPLLKRV
Ga0310135_043384	Ga0310135_043384_189_428	F063614	MNRRFKKMTYKRLYITIDTLVKTGFEKVNVLGIEDAQNDLWQIYDICQELMAFWDSELTEERIDELEEIMSELPLLKRV
Ga0310135_048698	Ga0310135_048698_69_329	F088079	MLTEKAIWLENVPFRSIDEAIGGQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFVHISEIYKVDITFFKSNVVSTK