3300010281: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 1_4_20_6_A1 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010281
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121361 | Gp0153724 | Ga0134090
• Sample Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 1_4_20_6_A1 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 251543013
• Sequencing Scaffolds: 39
• Novel Protein Genes: 45
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium rectalis	1
All Organisms → Viruses → Predicted Viral	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → unclassified Thermoanaerobacterales → Thermoanaerobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Tissierellia → unclassified Tissierellia → Tissierellia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → unclassified Bacillus (in: Bacteria) → Bacillus sp. FJAT-45350	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001938	Metagenome / Metatranscriptome	614	Y
F009249	Metagenome / Metatranscriptome	320	Y
F010244	Metagenome / Metatranscriptome	306	Y
F014003	Metagenome / Metatranscriptome	266	Y
F014634	Metagenome / Metatranscriptome	261	Y
F019942	Metagenome / Metatranscriptome	226	Y
F020859	Metagenome / Metatranscriptome	221	Y
F021959	Metagenome / Metatranscriptome	216	Y
F038199	Metagenome	166	Y
F042860	Metagenome / Metatranscriptome	157	Y
F048731	Metagenome / Metatranscriptome	147	Y
F063614	Metagenome / Metatranscriptome	129	Y
F075996	Metagenome / Metatranscriptome	118	N
F087072	Metagenome / Metatranscriptome	110	Y
F089691	Metagenome / Metatranscriptome	108	Y
F091897	Metagenome / Metatranscriptome	107	Y
F093744	Metagenome / Metatranscriptome	106	Y
F099151	Metagenome / Metatranscriptome	103	N
F101010	Metagenome / Metatranscriptome	102	N
F105007	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134090_1002805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	8688
Ga0134090_1003202	All Organisms → cellular organisms → Bacteria	7782
Ga0134090_1003950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6651
Ga0134090_1005190	All Organisms → cellular organisms → Bacteria	5448
Ga0134090_1005831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4966
Ga0134090_1006140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium rectalis	4747
Ga0134090_1007180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4206
Ga0134090_1007859	All Organisms → Viruses → Predicted Viral	3903
Ga0134090_1010764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3018
Ga0134090_1012635	All Organisms → Viruses → Predicted Viral	2645
Ga0134090_1013061	All Organisms → Viruses → Predicted Viral	2576
Ga0134090_1013276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2541
Ga0134090_1013472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2511
Ga0134090_1013843	All Organisms → Viruses → Predicted Viral	2455
Ga0134090_1015434	All Organisms → Viruses → Predicted Viral	2245
Ga0134090_1016186	All Organisms → Viruses → Predicted Viral	2157
Ga0134090_1019120	Not Available	1883
Ga0134090_1020154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1805
Ga0134090_1021944	Not Available	1687
Ga0134090_1021990	All Organisms → Viruses → Predicted Viral	1684
Ga0134090_1023637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1591
Ga0134090_1024653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → unclassified Thermoanaerobacterales → Thermoanaerobacterales bacterium	1537
Ga0134090_1026019	Not Available	1470
Ga0134090_1027642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1401
Ga0134090_1028361	All Organisms → cellular organisms → Bacteria	1373
Ga0134090_1030173	Not Available	1305
Ga0134090_1034522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Tissierellia → unclassified Tissierellia → Tissierellia bacterium	1175
Ga0134090_1034852	Not Available	1167
Ga0134090_1035577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → unclassified Bacillus (in: Bacteria) → Bacillus sp. FJAT-45350	1147
Ga0134090_1039726	All Organisms → Viruses → Predicted Viral	1054
Ga0134090_1049392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	889
Ga0134090_1052556	Not Available	847
Ga0134090_1057209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	792
Ga0134090_1059477	All Organisms → cellular organisms → Bacteria	769
Ga0134090_1071310	All Organisms → cellular organisms → Bacteria	669
Ga0134090_1079959	Not Available	612
Ga0134090_1080730	Not Available	607
Ga0134090_1084301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	587
Ga0134090_1102447	All Organisms → cellular organisms → Bacteria	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134090_1002805	Ga0134090_10028052	F063614	MTYARLRIAIDTLVKTGLEKVNVLGVEESQTDLWQIYDMCQELMAFWDSELTEEHIDELEEIIAELPLLQRA*
Ga0134090_1002805	Ga0134090_10028053	F038199	MQYTQAEFLQLIKQYNSTDRKVIKANLKHIMDIYNIKPADIISLGYSPRNVYAWTNRSTKNIPLFEQALHIAVYFDFSITEFLK*
Ga0134090_1003202	Ga0134090_10032021	F101010	MFIIRDGYETVWSVEDKGNFVKGRISTSEKNKDGKYINSNWFATFVGKAKEPALTLSAKDRIKITSGKISNTTTGEGKDKKSFVNVVIFDFENLSNLQSESNDNFDELPF*
Ga0134090_1003950	Ga0134090_10039508	F010244	MTHKVKFTHSDKSCANTNHAELREGREVYRHPKGRYIVLEFQGRSGKFREAFGRRKL*
Ga0134090_1003950	Ga0134090_10039509	F001938	MIEKIYKNKYMVICDNCGTGQECDSWADVMDFMNEEGWKKKLFDGEWKHYCPECVEVKEP
Ga0134090_1005190	Ga0134090_10051908	F087072	MQSRVFTKRVFSLELSEEELSVIAGALYCANSEDIKCFVDKYKYPCSGYSFDEVAELQEKLSEEVNKLIESKKK*
Ga0134090_1005493	Ga0134090_10054932	F105007	MEDADVLEGIYRKFCETGDISYRESDAVFRIAQRFFSRKSYLSLKDVVPKWYEKVKREISNGRRGVFMHTVPLGSTEDFYRNLGTAGDPANLASCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEEEWVDMIR*
Ga0134090_1005831	Ga0134090_10058315	F063614	MNRRLQKMTYARLRITIDTLVKTGLEKVNVLGIEDAQSDLWQIYDICQELLRFWENEITDEQDYDLEEIIAELPILPRA*
Ga0134090_1006140	Ga0134090_100614011	F063614	MSYVRLKLTVDTLVKTGLEKVNVLGIDDAQNDLWQIYDMCRELMAFWDSELTEERIDELEEIMAELPLLKKV*
Ga0134090_1007180	Ga0134090_10071806	F038199	MQYTQAEFLQIIKQYNSTDRKVIKANLRRIMNIYGIKPADITALGYSPRNVYAWTNRSTNNAPMFEQALNIGVHFNFSITEFLK*
Ga0134090_1007859	Ga0134090_10078599	F087072	MKSRVFTKRIFSLELSEEELGIIAGALYCADSVDVKCFVDKYKYPCDGFNFDEIAECKEKLSEEINKLIENR*
Ga0134090_1010764	Ga0134090_10107643	F101010	MFIIRDAYATVWSVEDKGNFVRGRISTSEKDKDGKYINSNWFVTFVGKAKEPALALSTKDRIKITSGKISNTTTGKGKDKKSYVNVVVFDFELANQENMQDVPF*
Ga0134090_1012635	Ga0134090_10126351	F038199	MEYTQAEFLQLIQQYNSTDRKVIKANLKRIMDIYGIKPADIISLGYSPRNVYAWTNKSAKNIPLFEQALNIAVHFDFNITEFLK*
Ga0134090_1013061	Ga0134090_10130613	F014634	MQERIKEIFDLERIRDFVEKNIHDSEWIEEECGEKRRILVIDTLFDGGYGAYIPGMVLEMFGQAEGYDLEDPYNLEKNETIYDALEDLENEINDCLNELIPSKGRYYVGYHEYDGSYCLFYEEYERGENAE*
Ga0134090_1013061	Ga0134090_10130614	F048731	METIKRALEYALSINQNPIEIKKNMEDFFALSGYDRRYKFKWCALSGNHKYTFSGIFEYAGQKYYFSKMSGELELERI*
Ga0134090_1013061	Ga0134090_10130615	F020859	MKKIIAKEVNPSHVDFSYYFDDDGLKSVGGENCAVYIVSGDRRWYNGFNMEEYKEIEEKAKAIIDGFRDVSDKWANGYATYKEVMEDNAIPYTSRRCHLLKEWAEHADPYDTSDIAEFLTIITGEEWAVKSFTGYSQGDYCEVVYCVNHYTPEHITEIGKFWLGCGTEFIIDGCSGYYVIDELRWEEGEKLRQYLADCYGCKPEELEIYLYDGEHVVTDYKKMD*
Ga0134090_1013276	Ga0134090_10132764	F038199	MIQYTQAEFLQLLQQYNSTDRKVIKANLKRIMDIYNIKPADIMSLGYSPRNVYAWTNKSTKNIPLFEQALNIAVHFNFNITEFLK*
Ga0134090_1013472	Ga0134090_10134721	F038199	QAEFLQLLQQYNSTDRKVIKANLKRIMDIYNIKPADIISLGYSPRNVYAWTNKSTNNIPLFGQALNIAVHFDFNITEFLK*
Ga0134090_1013843	Ga0134090_10138436	F093744	MIGSSIIGGYNMGFKIGDRVEVNYPVDDFQGHVGIVKKIITDTELIHGKTLVICYWAFLDKEIGFYESSLDLI*
Ga0134090_1015434	Ga0134090_10154342	F099151	MVFREETFKENGQIIKKFYIDDKEVTQDVYFNLTDELYENTKFKQDDHNEEICNCEECQYLLELINEIRQSSDSEALAILKDEIEFRVQEAYIEGQHVLANELGNSLLKHAVKLENELDNLYENGSLDEYNEDI*
Ga0134090_1016186	Ga0134090_10161861	F014003	NKTKTKSWIKKAYKQSLFGYGHGYITDGYAVLVDEPHMHPTILEVCGTLTPDCKYSAEQFQKLLNLPDEPIEVADSQLEYVPDPKSRLRIFYNPKTGKELTINSLYFDLLDNPMDHKFYTNDSMTRLWIVYDEEVVGVVAPFMLKDKLSHISFKAEN*
Ga0134090_1019120	Ga0134090_10191203	F087072	MKSRAFTKRVFSLELSEEELGIIAGALYCANSEDIKCFVDKYKYPCSGYSFDEVAELQEKLSEEVNKLIEGKKE*
Ga0134090_1020154	Ga0134090_10201541	F063614	MTYARLRITIDTLVKTGLEKVNVLGVEESQADLWQIYDICQELLRFWEDEITDDQDYKLEEIITELPLLQRV*
Ga0134090_1021944	Ga0134090_10219442	F075996	QAVGILLPFWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVPLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARRDGLYVNGKRAGSFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSDLEKILDGLSEHDDETLLR*
Ga0134090_1021990	Ga0134090_10219906	F001938	MIEKIYKNKYMATCDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEWKHFCPECQEVKEP
Ga0134090_1021990	Ga0134090_10219907	F010244	MTHKVKFTHSDKSRAHINRAKVREGKEVYRHPRGHFVVLEFQGESGKFREALWPEEVKVG
Ga0134090_1023637	Ga0134090_10236374	F001938	IEKIYKNRYMATCDNCGTGQECDSWSDVMDFMNYEGWTKRLVDGEWKHYCPECQENEQIIERRVEKDGK*
Ga0134090_1024653	Ga0134090_10246531	F001938	NKCMVTCDNCGTGKECDNWADAIDFMNEEGWKKKLADGEWKHYCPECQEEQA*
Ga0134090_1026019	Ga0134090_10260192	F001938	MIEKIYKNKYMVTCDNCGTGQECDSWADVMDFMNEEDWKKRLVEGEFKHYCPECQEGLKC
Ga0134090_1027642	Ga0134090_10276421	F021959	MEVGIVSEQDIARLQEQIKTLFGDVNELKEDVKEIKQQLANRLPLWATILMSLLTGAIGWLIR*
Ga0134090_1028361	Ga0134090_10283612	F099151	MKFREETYKENGRIIKKYFIDDKEVTQDVFFKLTDELYENTKFIQDEHPDEICNCDDCQYLLDLVREIKIASDSEALDILKNEIDFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELENLYENSSSHEYNEDS*
Ga0134090_1030173	Ga0134090_10301731	F091897	MKGVYNMIGSSIPTFLNMQYRCRECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0134090_1034522	Ga0134090_10345221	F087072	MKSKVFTKRIFLLELSEEELGIIAGALYCANSEDIKSFVDKYKYPCSGYSFDEVAELQEKLSEEINKLIENRKIGLYNKEGQLPNG*
Ga0134090_1034852	Ga0134090_10348522	F001938	MIEKIYKNKYMVTCDNCGTGQEFDNWADVMDFMNEEGWKKRLVDGEFKHYCPECLVEKALKDGT
Ga0134090_1035577	Ga0134090_10355772	F021959	MEVGIVSEQDIARLQEQIKTLFGDVNELKEDVKEIKQQLANRLPLWATMLISALTGVIGWLIR*
Ga0134090_1039726	Ga0134090_10397262	F089691	GFSPAFRPFSREGGRERRSSDHKHNKILGGFTMEKKIKYIIREVPPEHTDFSYYFDDDGLTAAGGDYCYNLFIVAQSRHSSGFNEEEYQNIQNEIKNLFEMYEDIVNKSNYAQYSSIGAMLFDLGLINNIHNTRRIKEITEWLEACLSWGNISQTRTVAEYEPEETTAEYLTFKTGKQWAVDEAHGYCQGDYVKIVYCKEHYKDGVKHYGEIWLGAGKEFYTIELDENGEEVNTCGGYIIADCQARNDEDYKRLVCEWAGIPEDETRLEMIDSYKTVTQYTYRAV*
Ga0134090_1049392	Ga0134090_10493921	F101010	MFIIRDGYATVWSVEDKGNFVKGRISTSEKDKNGKYINSNWFAIFVGKAKEPALALSTKDRIKIISGKISNTTTGEGEDRKSFVNVVIFDFENLSNSQNESNDNFDDLPF*
Ga0134090_1052556	Ga0134090_10525561	F101010	MFIIRDAYATVWSVEDKGNFVRGRISTSEKDKDGKYINSNWFVVFVGKAKEPALALSTKDRIKIISGKISNTTTGEGEDKKSFVNVVIFDFENLSNSQNNFQPNESMDDLPF*
Ga0134090_1057209	Ga0134090_10572091	F001938	LIEKIYRNKYMVTCDNCETGQECDSWSEVIDFMNYEGWRKKLVDGEWKHYCPECQEG
Ga0134090_1059477	Ga0134090_10594772	F042860	MARMTREEILKRIEIEDVRIASADRNIEGLILQKNKSLDEQARLFALLEALPDEEPAEETGA*
Ga0134090_1071310	Ga0134090_10713102	F010244	MTHKVKFTHSDKSRAHIDRTKVREGKEVYRHPRGYFVVLEFEGVSGKFRETFWPEEILKQELFL*
Ga0134090_1079959	Ga0134090_10799591	F019942	MIKISGLEHLTASKQMEVLEGLLDISERRVRSKQDVLT
Ga0134090_1080730	Ga0134090_10807301	F009249	MKTHIEYPDIFF*KYNSHYHIEMGTYILIDLL*AGG
Ga0134090_1084301	Ga0134090_10843013	F001938	LIEKIYKNKYMVTCDNCETGQECDSWSEVIDFMNYEGWRKKLVDGEWKHYC
Ga0134090_1102447	Ga0134090_11024472	F001938	MIEKIYKNKYMVICDNCGDGYECDSWADAMEFMLEEGWKKKLFDGEWKHFCPECQEGLR*