 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300032890 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128851 | Gp0330601 | Ga0314747 |
| Sample Name | Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 96487130 |
| Sequencing Scaffolds | 56 |
| Novel Protein Genes | 71 |
| Associated Families | 55 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 9 |
| Not Available | 18 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum | 5 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae | 2 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 2 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae | 5 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum | 3 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 5 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae → Eragrostidinae → Eragrostis → Eragrostis curvula | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 42.3956 | Long. (o) | -85.3757 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000459 | Metagenome / Metatranscriptome | 1109 | Y |
| F000927 | Metagenome / Metatranscriptome | 831 | Y |
| F001705 | Metagenome / Metatranscriptome | 648 | Y |
| F003727 | Metagenome / Metatranscriptome | 471 | Y |
| F008406 | Metatranscriptome | 333 | N |
| F009114 | Metagenome / Metatranscriptome | 322 | Y |
| F009305 | Metagenome / Metatranscriptome | 319 | Y |
| F010664 | Metagenome / Metatranscriptome | 300 | Y |
| F012755 | Metagenome / Metatranscriptome | 277 | Y |
| F014470 | Metatranscriptome | 262 | Y |
| F015691 | Metagenome / Metatranscriptome | 252 | Y |
| F018299 | Metagenome / Metatranscriptome | 235 | Y |
| F018302 | Metagenome / Metatranscriptome | 235 | Y |
| F019078 | Metagenome / Metatranscriptome | 231 | Y |
| F019940 | Metagenome / Metatranscriptome | 226 | Y |
| F019942 | Metagenome / Metatranscriptome | 226 | Y |
| F020484 | Metagenome / Metatranscriptome | 223 | Y |
| F023769 | Metagenome / Metatranscriptome | 208 | Y |
| F024696 | Metagenome / Metatranscriptome | 204 | Y |
| F026180 | Metagenome / Metatranscriptome | 198 | Y |
| F028371 | Metagenome / Metatranscriptome | 191 | Y |
| F032517 | Metagenome / Metatranscriptome | 179 | Y |
| F032897 | Metagenome / Metatranscriptome | 178 | Y |
| F040444 | Metagenome / Metatranscriptome | 161 | Y |
| F040454 | Metagenome / Metatranscriptome | 161 | N |
| F041531 | Metatranscriptome | 159 | Y |
| F042357 | Metagenome / Metatranscriptome | 158 | Y |
| F042712 | Metagenome / Metatranscriptome | 157 | Y |
| F043180 | Metagenome / Metatranscriptome | 156 | Y |
| F046814 | Metagenome / Metatranscriptome | 150 | N |
| F051618 | Metagenome / Metatranscriptome | 143 | Y |
| F056211 | Metagenome / Metatranscriptome | 137 | Y |
| F056280 | Metagenome / Metatranscriptome | 137 | Y |
| F057813 | Metagenome / Metatranscriptome | 135 | Y |
| F059570 | Metagenome / Metatranscriptome | 133 | Y |
| F060513 | Metagenome / Metatranscriptome | 132 | Y |
| F062397 | Metagenome / Metatranscriptome | 130 | Y |
| F065372 | Metagenome / Metatranscriptome | 127 | Y |
| F068385 | Metagenome / Metatranscriptome | 124 | Y |
| F069563 | Metagenome / Metatranscriptome | 123 | N |
| F072104 | Metagenome / Metatranscriptome | 121 | N |
| F075544 | Metagenome / Metatranscriptome | 118 | Y |
| F078111 | Metagenome / Metatranscriptome | 116 | Y |
| F079537 | Metagenome / Metatranscriptome | 115 | N |
| F085070 | Metagenome / Metatranscriptome | 111 | Y |
| F086518 | Metagenome / Metatranscriptome | 110 | Y |
| F089752 | Metagenome / Metatranscriptome | 108 | N |
| F091151 | Metagenome / Metatranscriptome | 107 | Y |
| F094644 | Metagenome / Metatranscriptome | 105 | N |
| F096410 | Metagenome / Metatranscriptome | 104 | Y |
| F096411 | Metagenome / Metatranscriptome | 104 | Y |
| F096516 | Metagenome / Metatranscriptome | 104 | Y |
| F102218 | Metatranscriptome | 101 | N |
| F102612 | Metagenome / Metatranscriptome | 101 | N |
| F104270 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0314747_1002777 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 2114 | Open in IMG/M |
| Ga0314747_1003637 | Not Available | 1949 | Open in IMG/M |
| Ga0314747_1004858 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum | 1777 | Open in IMG/M |
| Ga0314747_1006653 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae | 1602 | Open in IMG/M |
| Ga0314747_1009878 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 1380 | Open in IMG/M |
| Ga0314747_1013418 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 1214 | Open in IMG/M |
| Ga0314747_1015108 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax | 1152 | Open in IMG/M |
| Ga0314747_1015648 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae | 1134 | Open in IMG/M |
| Ga0314747_1016328 | Not Available | 1111 | Open in IMG/M |
| Ga0314747_1016859 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae | 1095 | Open in IMG/M |
| Ga0314747_1017520 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 1076 | Open in IMG/M |
| Ga0314747_1023705 | Not Available | 929 | Open in IMG/M |
| Ga0314747_1024059 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum | 921 | Open in IMG/M |
| Ga0314747_1025461 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum | 896 | Open in IMG/M |
| Ga0314747_1026006 | Not Available | 886 | Open in IMG/M |
| Ga0314747_1027136 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum | 867 | Open in IMG/M |
| Ga0314747_1027169 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum | 866 | Open in IMG/M |
| Ga0314747_1030260 | Not Available | 817 | Open in IMG/M |
| Ga0314747_1030712 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 810 | Open in IMG/M |
| Ga0314747_1032506 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae | 786 | Open in IMG/M |
| Ga0314747_1036276 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 740 | Open in IMG/M |
| Ga0314747_1036922 | Not Available | 732 | Open in IMG/M |
| Ga0314747_1037932 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 721 | Open in IMG/M |
| Ga0314747_1038566 | Not Available | 715 | Open in IMG/M |
| Ga0314747_1040526 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 695 | Open in IMG/M |
| Ga0314747_1041302 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae | 688 | Open in IMG/M |
| Ga0314747_1042106 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae | 680 | Open in IMG/M |
| Ga0314747_1045263 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 652 | Open in IMG/M |
| Ga0314747_1045475 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae → Eragrostidinae → Eragrostis → Eragrostis curvula | 650 | Open in IMG/M |
| Ga0314747_1045990 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae | 646 | Open in IMG/M |
| Ga0314747_1046653 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 640 | Open in IMG/M |
| Ga0314747_1049004 | Not Available | 622 | Open in IMG/M |
| Ga0314747_1049659 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 617 | Open in IMG/M |
| Ga0314747_1050166 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 613 | Open in IMG/M |
| Ga0314747_1050533 | Not Available | 611 | Open in IMG/M |
| Ga0314747_1051863 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum | 601 | Open in IMG/M |
| Ga0314747_1053264 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae | 592 | Open in IMG/M |
| Ga0314747_1053569 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 590 | Open in IMG/M |
| Ga0314747_1054197 | Not Available | 585 | Open in IMG/M |
| Ga0314747_1055441 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 577 | Open in IMG/M |
| Ga0314747_1055469 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria | 577 | Open in IMG/M |
| Ga0314747_1056691 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 570 | Open in IMG/M |
| Ga0314747_1059177 | Not Available | 555 | Open in IMG/M |
| Ga0314747_1059296 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum | 554 | Open in IMG/M |
| Ga0314747_1061583 | Not Available | 542 | Open in IMG/M |
| Ga0314747_1061693 | Not Available | 541 | Open in IMG/M |
| Ga0314747_1061752 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum | 541 | Open in IMG/M |
| Ga0314747_1062030 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum | 539 | Open in IMG/M |
| Ga0314747_1063411 | Not Available | 532 | Open in IMG/M |
| Ga0314747_1063726 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | 530 | Open in IMG/M |
| Ga0314747_1063813 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum | 530 | Open in IMG/M |
| Ga0314747_1063944 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 529 | Open in IMG/M |
| Ga0314747_1064565 | Not Available | 526 | Open in IMG/M |
| Ga0314747_1067596 | Not Available | 511 | Open in IMG/M |
| Ga0314747_1067899 | Not Available | 509 | Open in IMG/M |
| Ga0314747_1068936 | Not Available | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0314747_1000884 | Ga0314747_10008844 | F096410 | VSRFLTFLYFLDKLCTVPLSWVGSTVHAVNSNRSRILGKIRLAWFVISLNLEIGFLRVKSGFLKGQVSPSI |
| Ga0314747_1001284 | Ga0314747_10012841 | F094644 | MIKLCRTWLIFLFLNFSKVALNEIYFPIMSIKIPTISFRHMASLLLLFNANKCSLHSGYCHTCALRLLCNSNTWILQIXGKDIHLPFASPSSGFQQRMXCCQNHKXLFTLSFIKDLRSMAIYIRMDALECGYHFPSENDQVXQISHFNKSVIVQIHEHRNAKSNIWLNYTSNSLETSEFFGIFXSSLQQATLEKVHISIGNNISLNSYYHMWYVVHYKNIMYLRHDIHILLPCLYMGFNQMEIKHV |
| Ga0314747_1002777 | Ga0314747_10027774 | F009114 | MHPSFKYYLSNHYSNEKVPETKVIDLEILNNFGIQEFFI |
| Ga0314747_1003637 | Ga0314747_10036371 | F086518 | PVEGEAEPPRKRARPSGLMGLGRPAYPLSGPPRSHLSHVDSWHLLEFMSFTIAPLWALLSWRYLQRKDRIGNPSLNLYLLCLIPKYLDLIFVGLVLWALLEDGCA |
| Ga0314747_1003637 | Ga0314747_10036372 | F062397 | MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPCHFMLQNRPKTCQNEVPPKYMCQCKNDQ |
| Ga0314747_1004858 | Ga0314747_10048584 | F001705 | PKLTWDELVKRDLKDWNISKEIALDRSAWRLAINVSEP |
| Ga0314747_1006653 | Ga0314747_10066531 | F042712 | MGYLLDESGRQKFLQLFADRLALELIEASQALLHRLGVGSDVKGVLGDLPWYARHVRGAPREDVCVGAEKIDEHHFLFAVEGGADLQRLVVGVIRVEQMTYNKIFNTSIK |
| Ga0314747_1008171 | Ga0314747_10081713 | F000459 | PPEAPVRNGVLERVDNVKRGRGRLKLTWDESVTRDFKEWNISKEVVLDRSA |
| Ga0314747_1009878 | Ga0314747_10098781 | F019942 | TPYGARVLRAPYMIKISGLEHLTASKQMEVLEGLLDISEGRVRSK |
| Ga0314747_1013418 | Ga0314747_10134181 | F026180 | VHPTARHSAADCREIQKLAKRVSGRREQSSKDGSPPPRQRAGKEKASDSGAAAGEKELGYQSPARELKGVYHDDDSDSDNGDRRKKLYVMYGGSWELVSRRDVKTLRREVLSVKPGVPKA |
| Ga0314747_1015108 | Ga0314747_10151081 | F019940 | TTHDICHHIFMFDGRDKNINSQTNSSTKHILNTYGGVMQNEIYCN |
| Ga0314747_1015648 | Ga0314747_10156481 | F041531 | GDDTVISANRDILVQDYPSGYRRNLDKTIRAGNTAEVNSTVFLWSKGKWREVRHLRRGGAVTDYPGMLHMAKAVTVSPRFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRTYTPLPEPSDGCVFPEEMVRITGRDPTPVEQEALRAVQWRHGRWGGSKRDVFSPSCGKVRRSYHYRARPGFSYLSFVGPGKTKLSPLWEKGADWGLVPADFRSEEEERGLAKLEQFRADWDSGFIAIGD |
| Ga0314747_1016328 | Ga0314747_10163281 | F019940 | NTTHDICHHIFMYDGRDKNTSSQTKGSTKHILNTYGGAQNEIYCN |
| Ga0314747_1016859 | Ga0314747_10168591 | F001705 | LTWDESVKRDLKDWNISKEISLDRSAWRLAINMAEP |
| Ga0314747_1017520 | Ga0314747_10175202 | F056280 | LLSSLAPVFCFFFFVLTAFLLCYQGFPPQRFFYHRWHISRCPGGSDLGIDSDGGSRCGTLRYGVLLLTP |
| Ga0314747_1017633 | Ga0314747_10176331 | F008406 | VGRLSLEVEKTKTSVSPEFGSLNSTLCRRFGAFYRVVATVRMGMLRESESLDTLSKGFDDFIAGLKGSLRFPAAMAWFSWNIGKIRPLGLTTWDLGFRGPLAYRATKKFGLRLGPSLQSIPSLKVENGLSLDCEYVDPDLLDQDEKKENLAELAAWKWRTAFQVSSRPRRYFIFYLAISATRRDEPDFKPYLYGGESGVLSRNVGGAKIFRQRVQRKDRGFPLLIPMRGKLPSYEEFLAGEVDVGSVELHAKDKK |
| Ga0314747_1019319 | Ga0314747_10193192 | F000459 | VRNGVLERVDNVKRGRGRPKLTCDESVKRDLKDWNISKEIALDRSVWRLAINVPEA |
| Ga0314747_1023501 | Ga0314747_10235012 | F000459 | DNIKRGRDRPKLTWDELVKRDFKDWNISKEIALYRSVWRLAINVPKL |
| Ga0314747_1023600 | Ga0314747_10236001 | F000459 | GVLKRVDKVKRGRGRPKLTWDKSVKRDLKDWDISEELALDRSAWRLSINVPEP |
| Ga0314747_1023680 | Ga0314747_10236801 | F085070 | VTDGSCWSELPAGSELTGGVAVVEALVLALPGRGSVDVVTGSAKEVSTSDVVSAEAAGCVDC |
| Ga0314747_1023705 | Ga0314747_10237053 | F040454 | LEFKGASPRERLKPTEEEKGQAGRPRGVGPAGLLPVGLHFFGFFFCELFDASQDYVLLNFALDSTVFPSK |
| Ga0314747_1024059 | Ga0314747_10240591 | F096411 | SQGWEEGKELEPLHLGAQGHHHQYEGASNGVGSKGDLNPKNGIGGFGGLAHKLK |
| Ga0314747_1025461 | Ga0314747_10254611 | F104270 | VIRTRWCKEHKDLDRFGPPERNTLRPVWWFVFPLILFDVLEGSLF |
| Ga0314747_1026006 | Ga0314747_10260061 | F089752 | LTCLVKVVHLLGAPERGPGGCDNTPVGIVRPWGVYFEARASLFVCLKDKTCLRAEGGQGDDGACCSAAGAFVVLSRASGHRPWLPWLLCGAPFEGGRPEPMLRRSASRGSAPLYFVRSRLGVVTEGIFCPWSAVSSRATQASAFRQAWSLVPGTAINRGRGVSPSSPASQLFLPALPKSCNVSFALS |
| Ga0314747_1027136 | Ga0314747_10271361 | F075544 | LRPLHVGDDVLGHLNGAVPTPFLLPNLVSNHLAICFLLDNIGGAIALVPPVGFGVDERTLDC |
| Ga0314747_1027169 | Ga0314747_10271692 | F091151 | VRPGLDNRFLRVGPSSGPRLPREDRVGWHHIGGQDVELTLYRRRGYRIVFRTRFLTSTVYFNSMVCI |
| Ga0314747_1028757 | Ga0314747_10287571 | F000459 | MSNGGLLRRWCSSGVLERVDNVKRGGGKPKLTWDESVKRDLKDWNISKEIVLDRSAWRVAINVPEP |
| Ga0314747_1030260 | Ga0314747_10302601 | F000927 | MDYSSCFTFLYRTFNMGSGATNFMGATSKHILSTEIFPDFIHLYSRGDKKNKNSKILTKINSPESFTRDMPLKFLPETIHGLNILQKIFKDLTHYDKLVMQLT |
| Ga0314747_1030712 | Ga0314747_10307121 | F032517 | SLPFMNLSLSSSSFDKIINPYSEFLGLYGGGADDLVERRGGGGIPSVNLMEEFLGSLIPPRSNMLLLGAGLSSSMLRGDSETECLREELADASDVDERVLLLPVTNLMMPLMVTPCCTHSKTNTPGVSCRRENNTSKSGAN |
| Ga0314747_1032506 | Ga0314747_10325061 | F072104 | MFIDRAGVPDLSVSGDKFDLAEDDPHDPTTTSEPEAPMQSLNQLPVVTDLVDARSA |
| Ga0314747_1036276 | Ga0314747_10362761 | F042357 | MDLKPIRNSLGRNPLSDALHRNPGVVINGQGSDRHPSKGASYRDLGMMISEQGSGRHLNGALHLRSGVVKNEQGSSHFPRRVRRVRKLAEPTRIRIGS |
| Ga0314747_1036373 | Ga0314747_10363731 | F000459 | VDNVKRGRGRPKLTWDESVKGDLKDWNISKEIGLDRSAWRLAINVPEP |
| Ga0314747_1036922 | Ga0314747_10369221 | F028371 | LVELFFNVGFNESLLDSSSNSGLNVSGLLNFSSGFFLELLLTDFDSVVSQVPLSEGSSIDLDDGTLDQGVGSDQFVVRSIVDDLEDLSLSGDLFRRPGVVTGVELEGLELVVTTSNTESSDSLFTDLGKGSGTTGFVLLLLLVDGHTTTGKSSLVSGVSRDTHVLFFNFY |
| Ga0314747_1037932 | Ga0314747_10379321 | F059570 | VAYQSSPEPITSMPPVQADFSRTNGFTSYGVPPYATMTYNPYTMPPQNLGYSYGTMPNHGYSQQTPYTQPNHAPQMLNSSSANVQRPNYFYFNQILEKYKKDLAVMFKESFGIELKDKTLVCQKSYPESFDSIPYSQHFKVPEFIKFTGEDSRTKWEHVSQFNAQMRIYGSLDHLKIRMFPLSLSGTAFSWFSALAPNSVQT |
| Ga0314747_1038566 | Ga0314747_10385661 | F043180 | MVSITPFVAPAASRSETIHFGSQEFPAIPRNGSWAPPPFQPSQTFQFGSLEFVTDQLGALCLHEDEAAPAAAEESVPPPKLHKLKRRWSIRWCIRKRKPSQPTRVMLRGIMLMMATNPAVED |
| Ga0314747_1040526 | Ga0314747_10405261 | F079537 | APIFIAIFILFMLPVWASKKLRSQQRRPPFQLERQPTMAPAKKKATAGTTSTSTEPGRILDGPQPQHEGANPRIEDITNKAALHGDPIDNTENTEAHQLIEAALKLKALETKKKNIEAQLATKKRALDQANKLAEARRRLAEMEAEVESLQRAYQEMPEGSSQQENRVILQTAFTHNENQRPPPINLPFDPTSPLSVALQRTSWPLGYKPTQLPEYNATTDPTQFLMAYEA |
| Ga0314747_1041302 | Ga0314747_10413021 | F014470 | CVFPEEMVRVTGRDPTPVEQEALRSVQWKHGRWGGAKRDVFSPSCGKVRRSYHYRARPGFAYLSFVGPGRPKLSPLWEKGADWGLVPASFQTEEEERGLAELEQFRRDWDSGFISIGD |
| Ga0314747_1042106 | Ga0314747_10421061 | F023769 | ETLLTWSMPCADLHKNAFQRSSSRVAHVTRPVDNSTSGSTVKRCRDCLRGERDTKETIHNGLLLLRVRYGLPYAELPDCGPGDLSRFLSFLLLQGKERTSVAFPRRQRPGENGLCTLQRLCRRDRWALAHGCSSIKRNLPKGCFRHTPSVFAAWEAAALSQPPPLTPGYLEHVRRVVTGIFRPGWDRNYNSFVGSHVPNPSARACKTRADVLWRRRRDEFFTATTS |
| Ga0314747_1043854 | Ga0314747_10438541 | F000459 | VRNGVLERVDNVKRGRGRPKLTWDESVKGDLKDWNISKEIALDRSAWRLAINV |
| Ga0314747_1045263 | Ga0314747_10452631 | F018302 | EDAYPSGVGGGAAAGCGLLAQRRLQEMRRQMHEAALTTVDLGKGGRVHVPSDGHQQSRRFATIFTREQSVVSAVGVGNLQLYSSNGSGGGSLFVVGGDALPSSTAFRYRPPRGRLRWTRSQLIPGGRTRAPLSFRWSPWDPGGDIRTDPARGRCSPYLQESSKIKSHSLFKISRDVKGLFLGVRFASSGVIVSVIVRLQLEDKLHVQVGCSVRGVKG |
| Ga0314747_1045475 | Ga0314747_10454751 | F012755 | MGLVSMVRSHPRQNLGNISPLFSGYTISLPGRVSGEQRGGAAEILSW |
| Ga0314747_1045990 | Ga0314747_10459901 | F102218 | MEEGVADVMGYASEATKSPRGFRMVVLANVTRLARQKIKTVHRLPGDLIAQVLASKRLKYAISARPAAEEPVLTNLFPVVPMPDGYDLSREEEAATLRREVKRAREDESWTGLHKQKIKARETKREMLILPGERIPGRKIWKMLQPEKTTPMETTLSCFAKAWEQKRKEALLADSPGDDPMMIVSDLSGIDRLVDAIKYWKQTKEKLGVCAVEA |
| Ga0314747_1046653 | Ga0314747_10466532 | F065372 | VHGKRPRPQGGNGGSCPVYPTARHSAADCREIQKLVKRVSGRREQSSKDGSPPPRQRSDKEKASDSEIAAGEKELGYQSPARELKGVYSHDNSDSDNEEHRKK |
| Ga0314747_1047789 | Ga0314747_10477891 | F000459 | VRSGVLKRVDKVKRGRGRPKLTWDESVKRDLKDWDISQELALDRSAWRLAINVPEP |
| Ga0314747_1049004 | Ga0314747_10490041 | F020484 | MARTLDVARSEIRQDRLQRWDAMDITLLFGISIGRMMTCWKGKFVHFAMEQYFSTCSVLEIERKIREDEAAMGQRGIEGGDDDVKQ |
| Ga0314747_1049659 | Ga0314747_10496591 | F040444 | GEAELSGHPGKEVEEGGEGLRLGAQRESLRVMRDIINSDQIISIARHAEYRRCPQVTVNEIKSMRSMRRRKRKRKSNTTT |
| Ga0314747_1050166 | Ga0314747_10501661 | F032897 | CHQKTIALEYVSSEQQLADFFTKAQTREHHRLHLLKLNASDPP |
| Ga0314747_1050533 | Ga0314747_10505332 | F078111 | MGWMNGIPWEDCHASEARTVVVEQEGWEISILSQLSTELMWHFA |
| Ga0314747_1051863 | Ga0314747_10518631 | F015691 | GCRTITLLGVVWYEVWVFFVFKAFWDVLSFGLGVAEWVLVLLLTVLLVDGLSFVHSVVYNVHKQAHNQNTENKDLSLSSNRIHIKCGAQSNFFEWFLNGMAGTKLREAW |
| Ga0314747_1053264 | Ga0314747_10532641 | F102218 | KYAISARPETEDPILTNLFPVVPMPDGYDLTREEEAATLRREVERAREDELWSGLHAQKKRARSLKKDQRALPGVKLPGRKIWKLLQPKKTIPLETTLSCFAKEWKSKRMEALRAVSTGDDPPLIVSDLSGIDRLIDTIKYWKKTKEKVGVCAVEAPVQGADFLAFELTNETPRISNPVMGCDNVASRYVLP |
| Ga0314747_1053569 | Ga0314747_10535691 | F003727 | LGQKHASKDRIELAVFKSFRGFLIEVLSFGLEVAELVLVRLLAVLLVDGLSFVHTVIYDVYKQTHNQEKEIKVLSLSLNRKQLRYGDRSNILGRFPNGMYKTML |
| Ga0314747_1054197 | Ga0314747_10541971 | F096516 | MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRD |
| Ga0314747_1055441 | Ga0314747_10554412 | F032897 | ELTKHIGVDVSFTRYHCRQKTVDIQYVPSEAQLADFFTKAQTRAQHQFHLLKLNASDPPLPP |
| Ga0314747_1055469 | Ga0314747_10554691 | F102612 | QQRLETLYQSLPDLVTTEQEDRTGIEALEQDVSKLDVKEQNLQDRANKYCQEFLYIGGPTPHKQDPTST |
| Ga0314747_1056691 | Ga0314747_10566911 | F009305 | VEMSXXDEALSNELGSFIELIFILNLICXXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPYMAXLIVCPHHKTGIFGLALFFFALFHQPTLHGFNENGSYYKRRLLFSSNKIKQKVFFKQSYINVELNLFFQVTYTFFVMCGLYTFTFLPYGRFYNRLGGNVGMLFAYMYVFFYLGVTSLRR |
| Ga0314747_1059177 | Ga0314747_10591772 | F024696 | GRIYRSTWLGGQVASPRDKEGYPGITINPKLTISGVA |
| Ga0314747_1059296 | Ga0314747_10592961 | F056211 | FNVPHANISSMNTSITKSTTATGTGVSRGKGDVWHPYINDPSYGQRLLEVVSFLIILAAIPAFLGGVYSCFVMAFGAALGLLGMHAWTRRHSILFIISAAVFGVWLVVVIILNAVRDVSTVVPFYSDVVINGLGYSPGQYNGSRIFTYIDHGILIVLTAIAFFTAIKVA |
| Ga0314747_1059964 | Ga0314747_10599641 | F000459 | VHNGVLERVDNVKRCRGRPKLAWDESIKRDLKNWNISKEIASDRSDWRLAI |
| Ga0314747_1060503 | Ga0314747_10605031 | F018299 | DIQLHLTLDSQSGELSVTSDELSVRSVNSQLSFFLKSGVVRCGVWSESPLGTDDDFLSTGELELASSEGFDSVGNVLFNKSDGVEDLVDLNSGDFTDGLTESTSHTGLKSISTGAGKHFVNSDNVPRVDSTSQVETFFTTLFDQVLVGSNTAGFHSFGRDLFLFKRYKVDSVGEFFDFSLLL |
| Ga0314747_1061583 | Ga0314747_10615832 | F026180 | VHPTARHSAADCREIQKLAKRVSGRREQSSKDGSPPPRQRAGKEKASDSGAAAGEKELGYQSPARELKGVYHDDDSDSDNGDRRKKLYVMYGGSWELVSRRDVKTLRREVLSVKPGVPKAAPHQRWMNTTISFGPSDCPENMAGAG |
| Ga0314747_1061693 | Ga0314747_10616931 | F069563 | GLMGDEERGVLEIGEVEEGTTHLARSMATVARPVGVEAGSHLLVGVDCAEGSLRGPEVYGSVLPGGGSGMSRLHHRH |
| Ga0314747_1061752 | Ga0314747_10617521 | F003727 | VFIKLRQNHASKDGIELAVFKSFRKVLIEALSFGFGVAELVLVHLLTVLLVDGLSFVHTVIYGAHKQAHNKEKEIEVLTLSLKQEKLRYGDRKNIFGRFSNS |
| Ga0314747_1062030 | Ga0314747_10620301 | F056211 | SITKSTTVTGTGVSRGKGDVWHPYINDPSYGQRLLEVVSYLIILAAVPAFLGGVYSCFVMAYGAALGLLGMHAWTRRHAMIFIISAAVFGVYLVVVIILNAVRDVSTVVPFYDDIVIQSLNPQRYSSGQFNGSRIFAYIDHGILIVLTAIAFFTAIKVAGERRPEPGTLVHQTTTSTTN |
| Ga0314747_1063411 | Ga0314747_10634111 | F019078 | MSAEQKDLGDSAMGDGEKTCPCCQFYGVPCRQVRATEDEATTRRNQRLFSSTKRKRSHQEQLAEDSLFIDSPSVDELQTIQKRKDPECSRDTQVENQALYDYINGLT |
| Ga0314747_1063726 | Ga0314747_10637261 | F060513 | MNTTEAPEATGQTACADRSDRSSPVRCTEPTGQTGHPDRSDRSNTEWLQQRLDQYRARTNNMCEAIEDSDDLDKLGQGFASADPLEKVDIGDGTIPR |
| Ga0314747_1063813 | Ga0314747_10638131 | F001705 | GGRPKLTWDELVKRDLKDWNISKEIALDRSAWRLAINVAEP |
| Ga0314747_1063944 | Ga0314747_10639441 | F051618 | MCEAIEDFGDFDKLGQGFTSANPLEKVDIGDGSIPRLTFVNANLSDDL |
| Ga0314747_1064565 | Ga0314747_10645651 | F068385 | MIRLVSYEIXNETPQFETIMRAKDLISKIKDLSSLK |
| Ga0314747_1067596 | Ga0314747_10675961 | F010664 | MGDNHSNENHGAQPQPPPSLAQAVAALIADRNEQTELIRQLVQAIAGRGRQAPPPPAAETDYVGFLATQPP |
| Ga0314747_1067899 | Ga0314747_10678991 | F046814 | VKEDDNKQDNLGFGFWNPVDLMSCSNEEFSLPNIDGASNLEMKNTDMIIARN |
| Ga0314747_1068936 | Ga0314747_10689362 | F057813 | MVIVNYRNIKKYAKYISVYIKVKLYEILYFSETSKYDLSYMRYYIVIVIRELMIFFWTIRRP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |