NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F078111

Metagenome / Metatranscriptome Family F078111

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078111
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 43 residues
Representative Sequence MGWMNGIPWVDCHTLEARTVVVEQEGWEISILSQLRTELMCHLA
Number of Associated Samples 87
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 30.17 %
% of genes near scaffold ends (potentially truncated) 21.55 %
% of genes from short scaffolds (< 2000 bps) 100.00 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.966 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(61.207 % of family members)
Environment Ontology (ENVO) Unclassified
(86.207 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(74.138 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.44%    β-sheet: 0.00%    Coil/Unstructured: 55.56%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A93.97 %
All OrganismsrootAll Organisms6.03 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005365|Ga0070688_100842594Not Available720Open in IMG/M
3300005617|Ga0068859_102906812Not Available524Open in IMG/M
3300005841|Ga0068863_100917536Not Available877Open in IMG/M
3300005841|Ga0068863_102438609Not Available532Open in IMG/M
3300005843|Ga0068860_102626569All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis523Open in IMG/M
3300009553|Ga0105249_11669474Not Available710Open in IMG/M
3300009972|Ga0105137_108061Not Available556Open in IMG/M
3300009976|Ga0105128_104961Not Available784Open in IMG/M
3300009981|Ga0105133_113995Not Available648Open in IMG/M
3300009989|Ga0105131_122844Not Available630Open in IMG/M
3300009989|Ga0105131_129509Not Available580Open in IMG/M
3300009990|Ga0105132_124656Not Available615Open in IMG/M
3300009992|Ga0105120_1004866All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii1149Open in IMG/M
3300009994|Ga0105126_1021380Not Available707Open in IMG/M
3300009995|Ga0105139_1091206Not Available581Open in IMG/M
3300010371|Ga0134125_11027560All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum903Open in IMG/M
3300010396|Ga0134126_12447108Not Available568Open in IMG/M
3300010396|Ga0134126_12838301Not Available525Open in IMG/M
3300010400|Ga0134122_11267472Not Available742Open in IMG/M
3300010401|Ga0134121_12550246Not Available554Open in IMG/M
3300014325|Ga0163163_13348790Not Available500Open in IMG/M
3300014326|Ga0157380_11082290All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum840Open in IMG/M
3300014326|Ga0157380_12024950Not Available638Open in IMG/M
3300014968|Ga0157379_11386944Not Available681Open in IMG/M
3300015270|Ga0182183_1032131Not Available705Open in IMG/M
3300015270|Ga0182183_1089691Not Available513Open in IMG/M
3300015273|Ga0182102_1022199Not Available617Open in IMG/M
3300015273|Ga0182102_1025329Not Available596Open in IMG/M
3300015278|Ga0182099_1016659Not Available755Open in IMG/M
3300015278|Ga0182099_1048634Not Available568Open in IMG/M
3300015280|Ga0182100_1002630Not Available1479Open in IMG/M
3300015280|Ga0182100_1035483Not Available712Open in IMG/M
3300015293|Ga0182103_1097072Not Available514Open in IMG/M
3300015297|Ga0182104_1100228Not Available539Open in IMG/M
3300015301|Ga0182184_1034259Not Available724Open in IMG/M
3300015301|Ga0182184_1057522Not Available611Open in IMG/M
3300015306|Ga0182180_1017412Not Available930Open in IMG/M
3300015311|Ga0182182_1012136Not Available1068Open in IMG/M
3300015312|Ga0182168_1052962Not Available719Open in IMG/M
3300015313|Ga0182164_1009186Not Available1242Open in IMG/M
3300015313|Ga0182164_1088987Not Available596Open in IMG/M
3300015313|Ga0182164_1122273Not Available527Open in IMG/M
3300015316|Ga0182121_1045775Not Available788Open in IMG/M
3300015318|Ga0182181_1029155Not Available801Open in IMG/M
3300015319|Ga0182130_1056801Not Available692Open in IMG/M
3300015319|Ga0182130_1102293Not Available563Open in IMG/M
3300015320|Ga0182165_1099758Not Available588Open in IMG/M
3300015325|Ga0182148_1074471Not Available649Open in IMG/M
3300015325|Ga0182148_1116667Not Available549Open in IMG/M
3300015325|Ga0182148_1136514Not Available516Open in IMG/M
3300015327|Ga0182114_1153619Not Available514Open in IMG/M
3300015331|Ga0182131_1096074Not Available611Open in IMG/M
3300015332|Ga0182117_1119908Not Available585Open in IMG/M
3300015334|Ga0182132_1138211Not Available548Open in IMG/M
3300015335|Ga0182116_1172958Not Available510Open in IMG/M
3300015336|Ga0182150_1060084Not Available746Open in IMG/M
3300015339|Ga0182149_1050161Not Available821Open in IMG/M
3300015339|Ga0182149_1085811Not Available673Open in IMG/M
3300015339|Ga0182149_1104879Not Available622Open in IMG/M
3300015348|Ga0182115_1107744Not Available879Open in IMG/M
3300015348|Ga0182115_1205833Not Available630Open in IMG/M
3300015349|Ga0182185_1211555Not Available587Open in IMG/M
3300015350|Ga0182163_1133841Not Available766Open in IMG/M
3300015350|Ga0182163_1228275Not Available583Open in IMG/M
3300015352|Ga0182169_1185675Not Available680Open in IMG/M
3300015352|Ga0182169_1270086Not Available551Open in IMG/M
3300015354|Ga0182167_1187753Not Available758Open in IMG/M
3300017422|Ga0182201_1087685Not Available599Open in IMG/M
3300017432|Ga0182196_1125344Not Available544Open in IMG/M
3300017432|Ga0182196_1126824Not Available541Open in IMG/M
3300017432|Ga0182196_1139138Not Available524Open in IMG/M
3300017439|Ga0182200_1058124Not Available722Open in IMG/M
3300017439|Ga0182200_1078811All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis651Open in IMG/M
3300017447|Ga0182215_1134642Not Available565Open in IMG/M
3300017691|Ga0182212_1068285Not Available787Open in IMG/M
3300017692|Ga0182210_1154536Not Available511Open in IMG/M
3300017694|Ga0182211_1070826Not Available806Open in IMG/M
3300017694|Ga0182211_1086565Not Available729Open in IMG/M
3300017694|Ga0182211_1124428Not Available609Open in IMG/M
3300017792|Ga0163161_10992345Not Available716Open in IMG/M
3300020023|Ga0182178_1014038Not Available596Open in IMG/M
3300020223|Ga0182118_111981Not Available544Open in IMG/M
3300028049|Ga0268322_1030633Not Available621Open in IMG/M
3300028049|Ga0268322_1036433Not Available586Open in IMG/M
3300028050|Ga0268328_1009198Not Available988Open in IMG/M
3300028050|Ga0268328_1065293Not Available521Open in IMG/M
3300028053|Ga0268346_1014791Not Available710Open in IMG/M
3300028056|Ga0268330_1014253Not Available832Open in IMG/M
3300028061|Ga0268314_1020666Not Available706Open in IMG/M
3300028139|Ga0268355_1013235Not Available564Open in IMG/M
3300028140|Ga0268334_1019883Not Available501Open in IMG/M
3300028143|Ga0268348_1011052Not Available658Open in IMG/M
3300028151|Ga0268308_1012689Not Available689Open in IMG/M
3300028152|Ga0268336_1021099Not Available569Open in IMG/M
3300028153|Ga0268320_1022371Not Available553Open in IMG/M
3300028248|Ga0268312_1011683Not Available728Open in IMG/M
3300028248|Ga0268312_1028166Not Available557Open in IMG/M
3300028469|Ga0268337_1019381Not Available507Open in IMG/M
3300028471|Ga0268323_1007554Not Available688Open in IMG/M
3300028474|Ga0268331_1019012Not Available571Open in IMG/M
3300028476|Ga0268329_1025738Not Available526Open in IMG/M
3300028477|Ga0268309_1011397Not Available608Open in IMG/M
3300032464|Ga0214492_1020595Not Available1220Open in IMG/M
3300032465|Ga0214493_1125636Not Available602Open in IMG/M
3300032465|Ga0214493_1157014Not Available525Open in IMG/M
3300032466|Ga0214503_1278035Not Available516Open in IMG/M
3300032514|Ga0214502_1135917Not Available943Open in IMG/M
3300032514|Ga0214502_1142361Not Available920Open in IMG/M
3300032550|Ga0321340_1029734Not Available775Open in IMG/M
3300032551|Ga0321339_1114382Not Available609Open in IMG/M
3300032757|Ga0314753_1038853Not Available865Open in IMG/M
3300032812|Ga0314745_1016089All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii1474Open in IMG/M
3300032826|Ga0314732_128802Not Available532Open in IMG/M
3300032890|Ga0314747_1050533Not Available611Open in IMG/M
3300033526|Ga0314761_1030387All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii1154Open in IMG/M
3300033538|Ga0314755_1150610Not Available592Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere61.21%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere17.24%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated7.76%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.31%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.45%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.59%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.86%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.86%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009972Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaGHost-AssociatedOpen in IMG/M
3300009976Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaGHost-AssociatedOpen in IMG/M
3300009981Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300009992Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaGHost-AssociatedOpen in IMG/M
3300009994Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015270Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015273Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015278Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015306Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015318Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017691Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017692Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017694Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300020023Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MGHost-AssociatedOpen in IMG/M
3300020223Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_31MAY2016_LD2 MGHost-AssociatedOpen in IMG/M
3300028049Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028053Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028056Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028061Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028139Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028140Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028143Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028151Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028152Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028153Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028248Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028469Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028471Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028474Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028476Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028477Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032464Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032465Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032466Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032514Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032550Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12SEP2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032551Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032757Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032812Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032826Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032890Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033526Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033538Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070688_10084259423300005365Switchgrass RhizosphereMGWMNGIPWVDWHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0068859_10290681213300005617Switchgrass RhizosphereMGWMNGIPCVDCHMLEARTDVVEEEGWEISILSQLRTELMCHLA*
Ga0068863_10091753623300005841Switchgrass RhizosphereMGWMNGIPWVDCHTLEARTVVVEQEGWEISILSQLWTELMCHLA*
Ga0068863_10243860923300005841Switchgrass RhizosphereMGWMNGILWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0068860_10262656923300005843Switchgrass RhizosphereMGWLNGIPWVDCHTLEARTIVVEQEGWEISILSQLRTE
Ga0105249_1166947413300009553Switchgrass RhizosphereMGWMNGIPCVDCHMLEARTDVVEQEGWEISISSQLRTELMCHLA*
Ga0105137_10806113300009972Switchgrass AssociatedMGWMNGIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0105128_10496123300009976Switchgrass AssociatedMGWMNGIPCVDCHMLEARTDVVEQEGWEISILSQLRTELMCHLA*
Ga0105133_11399513300009981Switchgrass AssociatedMMGWMNGILCVDCHTLEARTDVVEQEGWEISILSQLRTGLTCRLA*
Ga0105131_12284413300009989Switchgrass AssociatedMNGIPRVDCHTLEARTVVVEQEGWEISILSQLRTELMCHLA*
Ga0105131_12950913300009989Switchgrass AssociatedMRWMNGIPWVDCHALEARIIVVEQGGWEIAILSQLRTELMCHLA*
Ga0105132_12465613300009990Switchgrass AssociatedMGWMNGIPCVDCHMLEARTDVVEQEGWEMSILSQLRTELMCHLV*
Ga0105120_100486623300009992Switchgrass AssociatedMGWMNGILWVDCHVLEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0105126_102138013300009994Switchgrass AssociatedMGWMNGIPWVDCHTLEARTVVVEKEGWEISILSQLRTELMCHLA*
Ga0105139_109120613300009995Switchgrass AssociatedMKWMNGIPWVDCHALEARTIVVEQEGWEISILTQLRTELMCHLA*
Ga0134125_1102756013300010371Terrestrial SoilMNGIPCVDCHMLEARTNVVEQEGWEISILSQLRTELM
Ga0134126_1244710813300010396Terrestrial SoilMGWMNGIPWVDCHTLEARTVVVEQEGWEISILSQLRTELMCHLA*
Ga0134126_1283830123300010396Terrestrial SoilMGWMNGIPWVVCHALEAHTIVVEQGGWEIAILSQLRTKLMCHLT*
Ga0134122_1126747213300010400Terrestrial SoilMNGIPWVDCHALEARTIVVEQGGWEIAIMSQLRTEL
Ga0134121_1255024613300010401Terrestrial SoilMGWMNGIPWVDCHALEVQTIVVEQGGLEIVILSQLRTELMCHLD*
Ga0163163_1334879013300014325Switchgrass RhizosphereMGWMNGILCVDCHMLEARTDVVEQEGWEISILSQLRTELMCHLA*
Ga0157380_1108229023300014326Switchgrass RhizosphereMGWMNGIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLS*
Ga0157380_1202495013300014326Switchgrass RhizosphereMGWMNGIPWVDCHTLEACTVVVEQEGWEISILSQLRTELMCHLA*
Ga0157379_1138694423300014968Switchgrass RhizosphereMGWMNGIPWVDCHVLEARTVVVEQEGWEISILSQLRTELMCHLA*
Ga0182183_103213113300015270Switchgrass PhyllosphereMGCMNGIPCVDCHMLEARTDVVEQEGWETYILSQLRTELMRHLA*
Ga0182183_108969113300015270Switchgrass PhyllosphereNIKMGWMNGIPWKDCHASEARTVVVEQEGWEISIMSQLRTELMCHLA*
Ga0182102_102219913300015273Switchgrass PhyllosphereMNGIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0182102_102532923300015273Switchgrass PhyllosphereMGWMNGIPCVDCHMLEARTDVVEQEGWEIVIAIN*
Ga0182099_101665913300015278Switchgrass PhyllosphereMGWMHGIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0182099_104863413300015278Switchgrass PhyllosphereMGWMNGIPWEDCHASEARTVVVEQEGWEISILSQLRTELMCHLA*
Ga0182100_100263033300015280Switchgrass PhyllosphereMGSMNGIPWVDCHTLEARTVVVEQEGWEISILSQLRTELMCHLA*
Ga0182100_103548313300015280Switchgrass PhyllosphereMGWMNGISWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0182103_109707213300015293Switchgrass PhyllosphereMGWMIGIPWVDCHALDARTIVVEQEGWEIFILSQLRTELMCHRA*
Ga0182104_110022813300015297Switchgrass PhyllosphereMGWMNGIPWVDCHALEARTIVVEQRGWEIAILSQLRTELMCHLA*
Ga0182184_103425913300015301Switchgrass PhyllosphereMGWTNGISVYIAVLEARTVVVEQGGWEISISSKLRTELMCHLA*
Ga0182184_105752213300015301Switchgrass PhyllosphereMGWMNDIPCVDCHMLEARADVVEQEGWEISILSQLRTELMCHLA*
Ga0182180_101741213300015306Switchgrass PhyllosphereMGWMNGIPWVDCHTLEAHTIVIEQEGWEISILSQLRTELMCHLA*
Ga0182182_101213613300015311Switchgrass PhyllosphereVKMGWMNGIPWVDCHTLEARTVVVEQEGWEISILSQLWTELMCHLA*
Ga0182168_105296213300015312Switchgrass PhyllosphereMGWMNGIPWVDCHTLEARTVVVEQEGWEISILSQLWTELMCHLA
Ga0182164_100918613300015313Switchgrass PhyllosphereMGWMNGIPWVDCHTLEARTVVVEQEGWEISIVSQLWTELMCHLA*
Ga0182164_108898713300015313Switchgrass PhyllosphereMGWMNGIPCVECHMLEARTDVVEQEGWEISISSQLRTELMCHLV*
Ga0182164_112227313300015313Switchgrass PhyllosphereMGWMNGIPWKDCHASEARTIVVEQEGWEISIQSQLRTELMCHLA*
Ga0182121_104577513300015316Switchgrass PhyllosphereMGWMNGIPWVDCHTLEAHTVVVEQEGWEISILSQLRTELMCHLA*
Ga0182181_102915523300015318Switchgrass PhyllosphereMGSMNGIPWVDCHTLEARTVAVEQEGWEISIVSQLWTELMCHLA*
Ga0182130_105680123300015319Switchgrass PhyllosphereMGWMNGIPYVDCHMLEARTDVVEQEGWDTELMCHLA*
Ga0182130_110229313300015319Switchgrass PhyllosphereEDCHVSEASTVVVEQEGCEISILSQLRTELMCHLA*
Ga0182165_109975813300015320Switchgrass PhyllosphereMGWMNGIPCVDCHMLEARTDVVEQEGWEISILLQLRTELMCHLA*
Ga0182148_107447113300015325Switchgrass PhyllosphereMNCIPWVDCHVLEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0182148_111666713300015325Switchgrass PhyllosphereMGWLNGIPWVDCHTLDARTIVVEQEGWEISILSQLRTELMCHLV*
Ga0182148_113651423300015325Switchgrass PhyllosphereMNGIPWVDCHALEARTIVVEQGGWEIATLLQLRTELMC
Ga0182114_115361913300015327Switchgrass PhyllosphereMGWMNDIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0182131_109607413300015331Switchgrass PhyllosphereMGWMNGIPCVDCHMLEARTDVVEQEGWEISILSQL
Ga0182117_111990813300015332Switchgrass PhyllosphereGWMNGIPCVDCHMLEARADVVEQEGWEISILSQLRTELMCHLA*
Ga0182132_113821123300015334Switchgrass PhyllosphereMGWMNGIPCVDCHMLEARTNVVEQEGWEISILSQLRTELMCHLA*
Ga0182116_117295813300015335Switchgrass PhyllosphereMGWMNGITCVDCHMLEARTDVVEQEGWEISILSQLRTELMCHLA*
Ga0182150_106008423300015336Switchgrass PhyllosphereMGWMTGIYCVDCHMLEARTDVVEQEGWEISILSQLRTELMCHLT*
Ga0182149_105016113300015339Switchgrass PhyllosphereMGWMNGIPWVDCHTLEARTVVVEQEGWEISILSQLRTELMCYLA*
Ga0182149_108581113300015339Switchgrass PhyllosphereVDCHTLEAHTVVVEQEGWEISILSQLRTELMCHLA*
Ga0182149_110487913300015339Switchgrass PhyllosphereNCIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0182115_110774413300015348Switchgrass PhyllosphereDCHTLEARTVVVEQEGWEISILSQLWTELMCHLA*
Ga0182115_120583313300015348Switchgrass PhyllosphereMNGILWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0182185_121155513300015349Switchgrass PhyllosphereMGWMDGILWVDCHALEARTVVVEQEGWEISILSQLKTELMCHLV*
Ga0182163_113384113300015350Switchgrass PhyllosphereNGILWVDCHALEARTVVVEQEGWEISILSQLKTELMCHLV*
Ga0182163_122827513300015350Switchgrass PhyllosphereMGLMNDIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA*
Ga0182169_118567513300015352Switchgrass PhyllosphereMGWMNGIPWVDCHTLEARTVVVEQEGWEISILSQLR
Ga0182169_127008613300015352Switchgrass PhyllosphereMGWMNGIYWVDCHALEALTVVVEQEGWEISILSQLRTELMCHLA*
Ga0182167_118775313300015354Switchgrass PhyllosphereMGWTNDISVYIAVLEARTVVVEQGGWEISISSKLRTELMCHLA*
Ga0182201_108768513300017422Switchgrass PhyllosphereMGWMNGIPWVDCHTLEARTIVVEQGGWEIAILSQLRTELMCHLT
Ga0182196_112534413300017432Switchgrass PhyllosphereMGWMDGILWVDCHALEARTVVVEQEGWEISILSQLKTELMCHLV
Ga0182196_112682413300017432Switchgrass PhyllosphereMMGWMNDIPWVDCRALEARTVVIEQEGWEISILSQQMTELMCHLA
Ga0182196_113913823300017432Switchgrass PhyllosphereMGWMNVIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA
Ga0182200_105812423300017439Switchgrass PhyllosphereMGWMNGIPWVDCHALEVRTIVVEQGGLEIAILSQLRTELMCHLV
Ga0182200_107881123300017439Switchgrass PhyllosphereMGWMNGIPCVDCHMLEARTVVVEPEGWEICILSQLR
Ga0182215_113464213300017447Switchgrass PhyllosphereMGWMIGIPWVDCHALEARTVVVEQEGWEIFILSQLRTELMCHLA
Ga0182212_106828513300017691Switchgrass PhyllosphereMEWMIGIPWVDCHALEARTIVVEQGGWEIAILSQLRTKLMCHLA
Ga0182210_115453613300017692Switchgrass PhyllosphereMGWMNDIPWVDCHALEARTVVVEQEGWEISILAQLRTELMCHLA
Ga0182211_107082613300017694Switchgrass PhyllosphereMGWMNDIPWVGCHALEARTVVVEQEGWEISILSKLRTELMCYLA
Ga0182211_108656513300017694Switchgrass PhyllosphereMNGIPWVDSHALEARTIVVEQGGWEIAILSQLRTELMCHLA
Ga0182211_112442813300017694Switchgrass PhyllosphereMGWMNGIPCVDCHMLEARTGVVEQEGWEISILSQLRTELMCHLA
Ga0163161_1099234523300017792Switchgrass RhizosphereMGWMNGIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCYLA
Ga0182178_101403813300020023Switchgrass PhyllosphereMGWMNGIPCVDCHMLEARTDVVEQEGWEISILSQLRTELMCHLA
Ga0182118_11198113300020223Switchgrass PhyllosphereMGWMNGIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA
Ga0268322_103063323300028049PhyllosphereMGWMNGIPCVDCHMLEARTDVVEQEGWEISILSQLRT
Ga0268322_103643313300028049PhyllosphereMEWMNGIPGVDCHMLEARTDVVEQEGWEISILSQLRTELMYHLA
Ga0268328_100919813300028050PhyllosphereNVIPWVDCHTLEARTVVVEQEGWEISIVSQLWTELMCHLA
Ga0268328_106529313300028050PhyllosphereMGWMNGIPWVDCHTLEAHTVVVEQEGWEISILSQLRTELMCHLA
Ga0268346_101479113300028053PhyllosphereMGWMIGIPWVDCHALEARTVGVEQEGWEIAILSQLRTELMCHLA
Ga0268330_101425313300028056PhyllosphereMGWMNGIPWVDCHTLEARTVVVEQEGWEISIVSQLWTELMCHLA
Ga0268314_102066613300028061PhyllosphereMNGIPWVDCHTLEARTVVVEQEGWEISIVSQLWTELMCHLA
Ga0268355_101323523300028139PhyllosphereMGWMNGIPCVDCHMLEARTDVVEQEGWEISILSQLRTE
Ga0268334_101988313300028140PhyllosphereMGWMNGIPWVDCHALEACTIVVEQGDWEIAILSQLRTELMCHLA
Ga0268348_101105223300028143PhyllosphereMGWVNGILWVDCHALEARTIVVEQGGWEIAILSQLRTKLMCHLA
Ga0268308_101268923300028151PhyllosphereMGWMNGIPWVDCHTLDARTVVVEQEGWEISIVSQLWTELMCHLA
Ga0268336_102109913300028152PhyllosphereMGWMTGIYCVDCHMLEARTDVVEQEGWEISILSQLRTELMCHLA
Ga0268320_102237123300028153PhyllosphereMGWMNGISWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA
Ga0268312_101168313300028248PhyllosphereMGWMNGIPWVDCHTLEAHTVVVEQEGWEISILSQLRTKLICHLA
Ga0268312_102816623300028248PhyllosphereMGWMNGIPWVDCHVLGARTIVVEREGWEISILSQLRTELMCHLA
Ga0268337_101938113300028469PhyllosphereMGWMNGIPWVDCHTLEACTVVVEQEGWEISILSQLRTELMCHLA
Ga0268323_100755413300028471PhyllosphereMGWMNGIPWVDCHTLEARTVVVEQEGWEISILSQLRTELMCHLA
Ga0268331_101901213300028474PhyllosphereMGWMNGIPCVDCHMLEARTDVVEQEGWEISILSQLRTELTCHL
Ga0268329_102573813300028476PhyllosphereKEKNVKMRWMNGIPCVDCHILEARTDVVEQEGWEISILSQLRTELMCHLA
Ga0268309_101139713300028477PhyllosphereMGWMNGIPWKDCHASEARTIVVEQEGWEISILSQLRTELMCHLA
Ga0214492_102059513300032464Switchgrass PhyllosphereMGWMNGIPWEDCHASEARTVVVEQEGWEISILSQLRTELMCHLA
Ga0214493_112563613300032465Switchgrass PhyllosphereMGWMNGILWVDCHVLEARTIVVEQGGWEIAILSQLRIELMCHLA
Ga0214493_115701413300032465Switchgrass PhyllosphereMGWMNSIPRVDCHALEARTVVVEKEGWEISILSQLRTELMCHLT
Ga0214503_127803513300032466Switchgrass PhyllosphereGWMNGIYWVDCHALEALTVVVEQEGWEISILSQLRTELMCHLA
Ga0214502_113591713300032514Switchgrass PhyllosphereMNGIPWVDCHVLEARTIVVEQGGWEIAILSQLRTELMCHLT
Ga0214502_114236113300032514Switchgrass PhyllosphereMGWMNGIPCVDCHMLEARTDVVEQEDWEISILSQLRTELMCHLA
Ga0321340_102973413300032550Switchgrass PhyllosphereMGWMNGIPSVDCHALEARNVVVEQEGWEISILSQLRTELMCHLA
Ga0321339_111438213300032551Switchgrass PhyllosphereMGWMNGIPCVDCHMLEARTDVVEQEGWEISILSQLRTKLMCHLA
Ga0314753_103885313300032757Switchgrass PhyllosphereMGWMNSIPRVDCHALEARTVVVEKEGWEISILSQLRTELMCHLG
Ga0314745_101608913300032812Switchgrass PhyllosphereMGWMNGIPWEDCHASEARTVVVEQESWEISILSQLRTELMCHLA
Ga0314732_12880213300032826Switchgrass PhyllosphereMGWMNSIPWVDCHALEARTIVVEQGGWEIAILSQLRTELMCHLA
Ga0314747_105053323300032890Switchgrass PhyllosphereMGWMNGIPWEDCHASEARTVVVEQEGWEISILSQLSTELMWHFA
Ga0314761_103038713300033526Switchgrass PhyllosphereVKMGWMNGIPWEDCHASDARTVVVEQEGWEISILSQLRTELMCHLA
Ga0314755_115061013300033538Switchgrass PhyllosphereMGWMNGIPWEDCHASEARTVVVEQEGWEISILSQLSTELMCHLA


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