Metagenome / Metatranscriptome Family F096516

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096516
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	64 residues
Representative Sequence	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Number of Associated Samples	87
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.35 %
% of genes near scaffold ends (potentially truncated)	37.50 %
% of genes from short scaffolds (< 2000 bps)	97.12 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (95.192 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (55.769 % of family members)
Environment Ontology (ENVO)	Unclassified (79.808 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (60.577 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.22% β-sheet: 0.00% Coil/Unstructured: 34.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00931	NB-ARC	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
All Organisms	root	All Organisms	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
cellular organisms	root	All Organisms → cellular organisms	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Panicum sect. Hiantes	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Panicum virgatum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	2.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005330\|Ga0070690_100229932	Not Available	1303	Open in IMG/M
3300005355\|Ga0070671_101993715	Not Available	517	Open in IMG/M
3300005367\|Ga0070667_100210597	Not Available	1727	Open in IMG/M
3300005544\|Ga0070686_100908836	Not Available	717	Open in IMG/M
3300005841\|Ga0068863_101253766	Not Available	748	Open in IMG/M
3300005841\|Ga0068863_102125389	Not Available	571	Open in IMG/M
3300009092\|Ga0105250_10069206	Not Available	1425	Open in IMG/M
3300009973\|Ga0105136_103479	Not Available	819	Open in IMG/M
3300009975\|Ga0105129_100887	Not Available	1193	Open in IMG/M
3300009975\|Ga0105129_118640	Not Available	529	Open in IMG/M
3300009976\|Ga0105128_113328	Not Available	594	Open in IMG/M
3300009977\|Ga0105141_113442	Not Available	710	Open in IMG/M
3300009980\|Ga0105135_122431	Not Available	563	Open in IMG/M
3300009980\|Ga0105135_128594	Not Available	519	Open in IMG/M
3300009981\|Ga0105133_111222	Not Available	687	Open in IMG/M
3300009989\|Ga0105131_125021	Not Available	612	Open in IMG/M
3300009990\|Ga0105132_125365	Not Available	610	Open in IMG/M
3300009992\|Ga0105120_1017666	Not Available	763	Open in IMG/M
3300009992\|Ga0105120_1048898	Not Available	533	Open in IMG/M
3300009995\|Ga0105139_1029877	Not Available	872	Open in IMG/M
3300009995\|Ga0105139_1106627	Not Available	541	Open in IMG/M
3300010371\|Ga0134125_12295277	Not Available	587	Open in IMG/M
3300010396\|Ga0134126_11113313	Not Available	880	Open in IMG/M
3300010396\|Ga0134126_11238524	Not Available	828	Open in IMG/M
3300010397\|Ga0134124_10855504	Not Available	913	Open in IMG/M
3300010399\|Ga0134127_12894164	Not Available	559	Open in IMG/M
3300010399\|Ga0134127_13633155	Not Available	506	Open in IMG/M
3300010400\|Ga0134122_10275293	Not Available	1433	Open in IMG/M
3300010403\|Ga0134123_11343168	Not Available	752	Open in IMG/M
3300012949\|Ga0153798_10088745	Not Available	1503	Open in IMG/M
3300015278\|Ga0182099_1038218	Not Available	607	Open in IMG/M
3300015284\|Ga0182101_1068247	Not Available	576	Open in IMG/M
3300015290\|Ga0182105_1082640	Not Available	556	Open in IMG/M
3300015301\|Ga0182184_1018272	Not Available	884	Open in IMG/M
3300015310\|Ga0182162_1013783	Not Available	1058	Open in IMG/M
3300015310\|Ga0182162_1125519	Not Available	509	Open in IMG/M
3300015311\|Ga0182182_1033131	Not Available	788	Open in IMG/M
3300015311\|Ga0182182_1054722	Not Available	670	Open in IMG/M
3300015312\|Ga0182168_1134935	Not Available	506	Open in IMG/M
3300015318\|Ga0182181_1074734	Not Available	586	Open in IMG/M
3300015324\|Ga0182134_1051897	Not Available	746	Open in IMG/M
3300015325\|Ga0182148_1076827	Not Available	642	Open in IMG/M
3300015327\|Ga0182114_1068986	Not Available	709	Open in IMG/M
3300015333\|Ga0182147_1170337	Not Available	501	Open in IMG/M
3300015335\|Ga0182116_1150907	Not Available	544	Open in IMG/M
3300015336\|Ga0182150_1073942	Not Available	692	Open in IMG/M
3300015336\|Ga0182150_1077235	Not Available	681	Open in IMG/M
3300015338\|Ga0182137_1130509	Not Available	578	Open in IMG/M
3300015339\|Ga0182149_1097332	Not Available	641	Open in IMG/M
3300015339\|Ga0182149_1118555	Not Available	592	Open in IMG/M
3300015339\|Ga0182149_1127467	Not Available	574	Open in IMG/M
3300015340\|Ga0182133_1067399	Not Available	775	Open in IMG/M
3300015340\|Ga0182133_1118937	Not Available	619	Open in IMG/M
3300015348\|Ga0182115_1207272	Not Available	628	Open in IMG/M
3300015349\|Ga0182185_1211502	Not Available	587	Open in IMG/M
3300015352\|Ga0182169_1129483	Not Available	819	Open in IMG/M
3300015353\|Ga0182179_1151746	Not Available	722	Open in IMG/M
3300015354\|Ga0182167_1276958	Not Available	600	Open in IMG/M
3300017408\|Ga0182197_1005513	Not Available	1682	Open in IMG/M
3300017412\|Ga0182199_1047348	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	869	Open in IMG/M
3300017421\|Ga0182213_1064518	Not Available	1002	Open in IMG/M
3300017439\|Ga0182200_1134655	Not Available	540	Open in IMG/M
3300017440\|Ga0182214_1113604	Not Available	584	Open in IMG/M
3300017447\|Ga0182215_1062072	Not Available	804	Open in IMG/M
3300017693\|Ga0182216_1178329	Not Available	552	Open in IMG/M
3300017694\|Ga0182211_1110762	Not Available	645	Open in IMG/M
3300020023\|Ga0182178_1000682	Not Available	1560	Open in IMG/M
3300020023\|Ga0182178_1003667	Not Available	928	Open in IMG/M
3300022465\|Ga0213505_107356	Not Available	929	Open in IMG/M
3300025711\|Ga0207696_1114103	Not Available	731	Open in IMG/M
3300025885\|Ga0207653_10411343	Not Available	530	Open in IMG/M
3300025910\|Ga0207684_11543919	Not Available	539	Open in IMG/M
3300025931\|Ga0207644_11649837	Not Available	537	Open in IMG/M
3300025986\|Ga0207658_10726389	Not Available	898	Open in IMG/M
3300026035\|Ga0207703_10683555	Not Available	975	Open in IMG/M
3300028049\|Ga0268322_1019654	Not Available	714	Open in IMG/M
3300028049\|Ga0268322_1034563	Not Available	597	Open in IMG/M
3300028056\|Ga0268330_1023615	Not Available	710	Open in IMG/M
3300028058\|Ga0268332_1050974	Not Available	594	Open in IMG/M
3300028061\|Ga0268314_1005488	Not Available	1079	Open in IMG/M
3300028062\|Ga0268342_1012405	Not Available	767	Open in IMG/M
3300028262\|Ga0268310_1007189	Not Available	947	Open in IMG/M
3300028472\|Ga0268315_1011548	Not Available	659	Open in IMG/M
3300028474\|Ga0268331_1027519	Not Available	508	Open in IMG/M
3300028527\|Ga0268335_1002094	Not Available	946	Open in IMG/M
3300032464\|Ga0214492_1004329	Not Available	2089	Open in IMG/M
3300032467\|Ga0214488_1014406	Not Available	1535	Open in IMG/M
3300032468\|Ga0214482_1029252	Not Available	1038	Open in IMG/M
3300032468\|Ga0214482_1069254	Not Available	678	Open in IMG/M
3300032469\|Ga0214491_1004484	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	2473	Open in IMG/M
3300032548\|Ga0214483_1033190	Not Available	865	Open in IMG/M
3300032625\|Ga0214501_1038079	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1467	Open in IMG/M
3300032697\|Ga0214499_1222564	Not Available	583	Open in IMG/M
3300032792\|Ga0314744_1002240	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	2654	Open in IMG/M
3300032822\|Ga0314740_1065310	Not Available	542	Open in IMG/M
3300032824\|Ga0314735_1011207	Not Available	1492	Open in IMG/M
3300032843\|Ga0314736_1021443	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	837	Open in IMG/M
3300032890\|Ga0314747_1054197	Not Available	585	Open in IMG/M
3300032914\|Ga0314750_1075167	Not Available	784	Open in IMG/M
3300032915\|Ga0314749_1053787	Not Available	866	Open in IMG/M
3300032932\|Ga0314717_120055	Not Available	720	Open in IMG/M
3300033532\|Ga0314767_1083011	Not Available	795	Open in IMG/M
3300033533\|Ga0314770_1108385	Not Available	867	Open in IMG/M
3300033533\|Ga0314770_1250854	Not Available	554	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	87.50%
Environmental	Environmental	11.54%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	87.50%
Terrestrial	Environmental → Terrestrial	11.54%
Bioreactor	Engineered → Bioreactor	0.96%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	65.38%
Unclassified	Host-Associated → Plants → Unclassified	13.46%
Soil	Environmental → Terrestrial → Soil	11.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Unclassified	Engineered → Bioreactor → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	65.38%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	13.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	7.69%
Loam	Environmental → Terrestrial → Soil → Loam	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	65.38%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	13.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	55.77%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	13.46%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	9.62%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	7.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Switchgrass Degrading	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009973	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaG	Host-Associated	Open in IMG/M
3300009975	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaG	Host-Associated	Open in IMG/M
3300009976	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaG	Host-Associated	Open in IMG/M
3300009977	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_91 metaG	Host-Associated	Open in IMG/M
3300009980	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaG	Host-Associated	Open in IMG/M
3300009981	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaG	Host-Associated	Open in IMG/M
3300009989	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaG	Host-Associated	Open in IMG/M
3300009990	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaG	Host-Associated	Open in IMG/M
3300009992	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaG	Host-Associated	Open in IMG/M
3300009995	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012949	Switchgrass enrichment cultures co-assembly	Engineered	Open in IMG/M
3300015278	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015284	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015290	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015301	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015310	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015311	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015312	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015318	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015324	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015325	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015327	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015333	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015335	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015336	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015338	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015339	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015340	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015348	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015349	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017408	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017412	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017421	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017439	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017440	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017447	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017693	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017694	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300020023	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MG	Host-Associated	Open in IMG/M
3300022465	Metatranscriptome of phyllosphere microbial comminities from switchgrass, Michigan, USA - G5R1_MAIN_12JUL2016_LR1 MT pilot (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300025711	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028049	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028056	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028058	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028061	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028062	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028262	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028472	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028474	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028527	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300032464	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032467	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032468	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032469	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032548	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032625	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032697	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032792	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032822	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032824	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032843	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032890	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032914	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032915	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032932	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_15MAY2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033532	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033533	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070690_1002299322	3300005330	Switchgrass Rhizosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV*
Ga0070671_1019937152	3300005355	Switchgrass Rhizosphere	MKKDSKSLAQAGMLTEIKDVVNLKVLIEEVRLDQDIKAQVLCMSFYVNLSIGCRTIKGDATSVV*
Ga0070667_1002105975	3300005367	Switchgrass Rhizosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQMFCMSFYVNLSIGCRTIKRDATSVV*
Ga0070686_1009088362	3300005544	Switchgrass Rhizosphere	MKEDSKSLTQAGMLTELEDVVNLKILFEEGRLERHESSSVVCMSFYVNLSIG
Ga0068863_1012537661	3300005841	Switchgrass Rhizosphere	MKEDSKSQAQVSMLTEFKDVDNLKILIEEVRLDQDITTQVLCMSFYVNLSIGCRTIKGDVTSVV*
Ga0068863_1021253891	3300005841	Switchgrass Rhizosphere	MKEDPKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV*
Ga0105250_100692061	3300009092	Switchgrass Rhizosphere	MKEDSKSLAQEGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV*
Ga0105136_1034792	3300009973	Switchgrass Associated	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVG*
Ga0105129_1008871	3300009975	Switchgrass Associated	MKENSKSLAQAVMLTEIKDVDNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKRDATSVV*
Ga0105129_1186401	3300009975	Switchgrass Associated	MKEDSKSLTQAGMLTEFKDVDNLKILIEEVRLDQYITTQVLCMSFYVNLSIGCRTIKRDAISVV*
Ga0105128_1133281	3300009976	Switchgrass Associated	MLTEIKDVDNLKILIEEVWPDQDMKAQVFCMSFYVNLSIGCRTIKGDATSVV*
Ga0105141_1134421	3300009977	Switchgrass Associated	GMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCSTIKRDATSVV*
Ga0105135_1224311	3300009980	Switchgrass Associated	MKEDSKSLTQAGMLTEFKDVDNLKILIEEVRLDQDIKAQVLCMSLYVNLSIGCRTIKRDATSVV*
Ga0105135_1285942	3300009980	Switchgrass Associated	MKEDSKSLAQAVMLTEIKDVDNLKILIEEVWPDQDMKAQVFCMSFYVNLSIGCRTIKRDVISVV*
Ga0105133_1112222	3300009981	Switchgrass Associated	MKEDSKSLAQAVMLTEIKDVDNLKILIEEVWPDQDMKAQVFCMSFYVNLSIGCRTIKGDATSVV*
Ga0105131_1250212	3300009989	Switchgrass Associated	MKENSKSLTQTCMLTEIEDVVNLKILIEEVRLDQDITTQVLCMSFYVNLSIGCRTIKGDVTSVV*
Ga0105132_1253651	3300009990	Switchgrass Associated	MKEDSKSLTQAGMLTEFKDVDNLKILIEEVRLDQDITTQVLCMSFYVNLSIGCRTIKG
Ga0105120_10176661	3300009992	Switchgrass Associated	MKQDSKSLAQAGIFTEIKDVDNLKILIEEVWLDQDIKAQVLCMSFYVNLSIGCRTIKGDETSVV*
Ga0105120_10488982	3300009992	Switchgrass Associated	EDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDIKAQVLCMSLYVNLSIGCRAIKGDATSVV*
Ga0105139_10298771	3300009995	Switchgrass Associated	MKEDSKSLVQASMLTEIKDVDNLKILIEEVWPDQDMKAQVFCMSFYVNLSIGCRTIKGDA
Ga0105139_11066272	3300009995	Switchgrass Associated	MKEDSRSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV*
Ga0134125_122952772	3300010371	Terrestrial Soil	MKEDSKSLAQSVMLTEIKDIDNLKILIEEVWFDQDKARVLCMSFYVNLSIGCRTIKGDATSVV*
Ga0134126_111133132	3300010396	Terrestrial Soil	MKEDSKSLTQAGMLTEIEDVVNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKGDATSVV*
Ga0134126_112385241	3300010396	Terrestrial Soil	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKGDVTSVV*
Ga0134124_108555041	3300010397	Terrestrial Soil	MLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV*
Ga0134127_128941641	3300010399	Terrestrial Soil	MTKDSKSLAQAGMHTEIKDVDNLKILIEEVRLDQDITTQVLCMSFYVNLSIGCRTIKGNATSMV*
Ga0134127_136331551	3300010399	Terrestrial Soil	MLTEIKDVDNLKILIEEVRLDQDKKAQVLCMLFYVNLSIGCRTIKRDATSVV*
Ga0134122_102752931	3300010400	Terrestrial Soil	KDGFHSYMKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV*
Ga0134123_113431682	3300010403	Terrestrial Soil	MKKDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKRDATSVV*
Ga0153798_100887452	3300012949	Switchgrass Degrading	MKEDSKSLAQVGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKGDATSVV*
Ga0182099_10382183	3300015278	Switchgrass Phyllosphere	MKKDSKSLAQAGMLTEIKDVDNLKILIEEVRFDQDKAQVLCMSFYVNLSIGCHTIKRDATSVV*
Ga0182101_10682471	3300015284	Switchgrass Phyllosphere	EDLKSLAQAGMLTKIKDVDYLKILIEEVRLDQDIKTQVLCMSFYVNLSIGCRTIKGDVTSVV*
Ga0182105_10826402	3300015290	Switchgrass Phyllosphere	MKEDSKSQAQVSMLTEFKDVDNLKILIEEVRLDQDIKTQVLCMSFYVNLSIGCRTIKGDVTSVV*
Ga0182184_10182721	3300015301	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATS
Ga0182162_10137831	3300015310	Switchgrass Phyllosphere	MKEDSKSPAQAGMLTEIEDVVNLKILIEEVRLDQDMKAQIAQVLCISFFENLSIRCRTIKGGATSVG*
Ga0182162_11255191	3300015310	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDADNLKILIEEVRFDQDKAQVLCMSFYVNLSIGCRTIKGDATSVV*
Ga0182182_10331311	3300015311	Switchgrass Phyllosphere	MKEDSKSLTQAGMLTEFKDVDNLKILIEEVRLDQYMKAQVFCMSFYVNLSIGCRTIKGDATSVV*
Ga0182182_10547221	3300015311	Switchgrass Phyllosphere	MKEDSKSLAQAVMLTEIKDVDNLKILIEEVRLDQDMKTQVFCMSFYVNLSIGCRTIKRDATSVA*
Ga0182168_11349351	3300015312	Switchgrass Phyllosphere	QAGMLTEFKDVDNLKILIEEDRLDQDMKTQVLLCVFFYVNLSIGCRTIKGGCNISGLILP
Ga0182181_10747342	3300015318	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTFKGDATLVV*
Ga0182134_10518971	3300015324	Switchgrass Phyllosphere	VSLFEKNRSDLRIKDGFHSYMNEDLKSLAQAGMLTEIKDVDNLKILIEEVRFDQDKAQVLCMSFYVNLSIGCCTIKGDATSVV*
Ga0182148_10768271	3300015325	Switchgrass Phyllosphere	MKEDSRSLTQAGMLTEIEDVVNLKILIEEVRLDQDMKAQVLCMSFHVNLSIGCHTIKGGATSVV*
Ga0182114_10689861	3300015327	Switchgrass Phyllosphere	MKEESKSLAQAGMLTEIKDVDNLKILIEEVRLDQDIKTQVLCMSFYVILSIGYRTIKEDATSVV*
Ga0182147_11703371	3300015333	Switchgrass Phyllosphere	MKKDSKSLAQAGMLTEIKDVVNLKVLIEEVRLDQDIKAQVLCMSFYVNLSIGCRTIKRDATLVV*
Ga0182116_11509072	3300015335	Switchgrass Phyllosphere	QAGMLTEIKDVDNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTFKGDATLVV*
Ga0182150_10739421	3300015336	Switchgrass Phyllosphere	MKEDSKSLTQAGMLTEIEDVVNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCHTIKEDATSVG*
Ga0182150_10772351	3300015336	Switchgrass Phyllosphere	SYMKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQNIKTQVLCMLFYVILSIGCRTIKGGAISVVDITKSAHSYPM*
Ga0182137_11305092	3300015338	Switchgrass Phyllosphere	MKEDSKSLTQAGMLTEIEDVVNLKILIEEVLLDQDMKAQLLCMSFYVNLSIGCCTIKRGATSVV*
Ga0182149_10973321	3300015339	Switchgrass Phyllosphere	FYMKEDSNSPTQVGMLTEIEDVVNLKILIEEVRLDQDRKAQVLCMSFYVNLSIGCRTIKGGATSVV*
Ga0182149_11185551	3300015339	Switchgrass Phyllosphere	EDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV*
Ga0182149_11274671	3300015339	Switchgrass Phyllosphere	EDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCISFYVNLSIGCRTIKGDATSVV*
Ga0182133_10673991	3300015340	Switchgrass Phyllosphere	MKEDSKSPAQAGMLAEFKDVDNIKILIEEVQLDQDIKTQVLCMSFYVNLSIGCRTIKGDATLVV*
Ga0182133_11189371	3300015340	Switchgrass Phyllosphere	MKQDSKSLAQAGIFTEIKDVDNLKILIEEVWLDQDIKAQVLCMSFYVNLSIGRRTIKGD
Ga0182115_12072721	3300015348	Switchgrass Phyllosphere	SYMKEDSKSLAQAGMLTEFKDVDNLKILTEEVRLDQGIKKTQVLCVSFYVNLSIGCRTIKGNATSVV*
Ga0182185_12115021	3300015349	Switchgrass Phyllosphere	IKDEFHFYMKKDSKLLAQTGMLTEFKDVDNLKILTEEVRLHQDIKKTQVLCVSFYANLSIGCRTIKGDATSVV*
Ga0182169_11294831	3300015352	Switchgrass Phyllosphere	MKQDSKSLAQAGIFTEIKDVDNLKILIEDVWLDQDIKAQVLCMSFYVNLSIGRRTIKGDATSVVLHYQKCS*
Ga0182179_11517461	3300015353	Switchgrass Phyllosphere	GFHSYMKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDKKAQVLCMLFYVNLSIGCRTIKRDATSVV*
Ga0182167_12769581	3300015354	Switchgrass Phyllosphere	CMKKDSKSLAQVGMLTNFKDVDNLKILTEEVQLDQDIKRAQVLCVSFYVNLSIGCRTIKGDAT*
Ga0182197_10055132	3300017408	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKDQMFCMSFYVNLSIGCRTIKRDATSVV
Ga0182199_10473481	3300017412	Switchgrass Phyllosphere	KDGFQSYMKQDSKSLAQAGIFTEIKDVDNLKILIEEVWLDQDIKAQVLCMLFYVNLSIGCRTIKGDATSVVLHYQKCS
Ga0182213_10645181	3300017421	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKYVVNLKVLIEEVRLDQDIKAQVLFMSFYVNLSIGCHTIKGDVTSVV
Ga0182200_11346551	3300017439	Switchgrass Phyllosphere	SKSLAQVGMLTEIKDVDNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKGDATSVV
Ga0182214_11136041	3300017440	Switchgrass Phyllosphere	LVNGCDLWIKDGFDSYMKEDSKSLTQAGMVTEIEDIVNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0182215_10620721	3300017447	Switchgrass Phyllosphere	LRIKDEFHSYMKEDSKSQAQAGMLTEFKDVDNLKILTEEVRLDQDIKKTQVLCVSFYVNLSIGCRTIKGNATSVV
Ga0182216_11783292	3300017693	Switchgrass Phyllosphere	MKEDSKSLTQAGMLTEFKDVDNLKILIEEVRLDQDITTQVLCMSFYVNLSIGCRTIKGDVTSVV
Ga0182211_11107621	3300017694	Switchgrass Phyllosphere	VNQSGFHSYMKEDSKSLAQVTCEEVRLDQDIKAQVLCMSFYVNLSIGCRTIKRDATSVV
Ga0182178_10006821	3300020023	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0182178_10036671	3300020023	Switchgrass Phyllosphere	MKEDSKSLTQAGMLTEIEDVVNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTI
Ga0213505_1073561	3300022465	Switchgrass Phyllosphere	MKEDSRSLTQASMLTEIEDVVNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKGDATSVV
Ga0207696_11141032	3300025711	Switchgrass Rhizosphere	MKEDSKSLAQEGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0207653_104113431	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MKEDSKSLAQAGMLNEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0207684_115439192	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	FHSYMKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0207644_116498371	3300025931	Switchgrass Rhizosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKR
Ga0207658_107263891	3300025986	Switchgrass Rhizosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVGLT
Ga0207703_106835551	3300026035	Switchgrass Rhizosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGC
Ga0268322_10196542	3300028049	Phyllosphere	MKEDSKSLVQAGMLTEIKDVDNLKILIEEVRLDQDIKTQVLCMSFYVILSIGYRTIKEDATSVV
Ga0268322_10345631	3300028049	Phyllosphere	MKEDSKSLTQAGMLTEFKNVDNLKILIEEVWLDQDITTQVLCMSFYVNLSIGCRTIKGDVTSVV
Ga0268330_10236151	3300028056	Phyllosphere	MKEDSKSLTQAGMLTEIEDVVNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKGDATSVI
Ga0268332_10509741	3300028058	Phyllosphere	MKEDSKSLAQVGMLTEFKDVDNLKILIEEVRLDQDIKTQVLCMSFYVNLSIGCRTIKGDVTSVV
Ga0268314_10054881	3300028061	Phyllosphere	MKEDSKSLAQADMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0268342_10124051	3300028062	Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQMFCMSFYVNLSIGCRTIKRDATSVV
Ga0268310_10071891	3300028262	Phyllosphere	VNQGXILDLXIKGEFYFYVKEDSKSLAQAGMLTEFKDVDNFNILIEEDRLDQDMKTHVLLCVFFYVNLSIGCRTIKGDATSVGXYYHK
Ga0268315_10115482	3300028472	Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCISFYVNLSIGCRTIKGDATS
Ga0268331_10275191	3300028474	Phyllosphere	DSKSLAQVGMLTEIKDVDNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKGDATSV
Ga0268335_10020941	3300028527	Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVQLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0214492_10043292	3300032464	Switchgrass Phyllosphere	MKEDSKLLTQAGMLTEIEDIVNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKGGAISVV
Ga0214488_10144062	3300032467	Switchgrass Phyllosphere	MKEDLKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0214482_10292521	3300032468	Switchgrass Phyllosphere	EDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0214482_10692541	3300032468	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQLFCMSFYVNLSIGCRTIKRDATSVVLHYQKCS
Ga0214491_10044843	3300032469	Switchgrass Phyllosphere	MKEDSKLLTQAGMLTEIEDIVNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIK
Ga0214483_10331902	3300032548	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEIRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0214501_10380791	3300032625	Switchgrass Phyllosphere	GMLTEFKDVDNLKILTEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0214499_12225641	3300032697	Switchgrass Phyllosphere	AQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYMNLSIGCRTIKRDATSVV
Ga0314744_10022401	3300032792	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVVLHYQKCS
Ga0314740_10653101	3300032822	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQLFCMSFYVNLSIGCRTIKRDATSVV
Ga0314735_10112071	3300032824	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTKIKDVDNLKILIEEVRLDQDIKAQVLCMSFYVNLSIGCRTIKGGAISVV
Ga0314736_10214431	3300032843	Switchgrass Phyllosphere	MKEDSKSPTQAGMLTEIEYVVNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0314747_10541971	3300032890	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRD
Ga0314750_10751672	3300032914	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIACRTIKRDATSVV
Ga0314749_10537872	3300032915	Switchgrass Phyllosphere	LENGSDLIKDGFHSYMKEDSKSLAQAGMLTEIKDVDNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0314717_1200551	3300032932	Switchgrass Phyllosphere	MKEDSKSLAQAGMLTEIEDIVNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKGGAISVV
Ga0314767_10830111	3300033532	Switchgrass Phyllosphere	MKEDSKLLTQAGMLTEIEDIVNLKILIEEVRLDQDMKAQVLCMSFYVNLSIGCRTIKRDATSVVXHYQ
Ga0314770_11083852	3300033533	Switchgrass Phyllosphere	MKEDSKSLTQAGMLTEIEDIVNLKILIEEVRLDQDIKAQVLCMSFYVNLSIGCRTIKGGAISVV
Ga0314770_12508542	3300033533	Switchgrass Phyllosphere	MKEDSKSLAQTGMLTEIKDVDNLKILIEEVQLDQDMKAQMFCMSFYVNLSIGCRTIKRDATSVV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096516

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences