NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026807

3300026807: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026807 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0095510 | Gp0072072 | Ga0207547
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size30319618
Sequencing Scaffolds38
Novel Protein Genes43
Associated Families43

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
Not Available15
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC68601
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium4
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeagricultural fieldagricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F001757Metagenome / Metatranscriptome641N
F002103Metagenome / Metatranscriptome593Y
F002315Metagenome / Metatranscriptome572Y
F004456Metagenome / Metatranscriptome437Y
F007536Metagenome / Metatranscriptome349Y
F007885Metagenome / Metatranscriptome343Y
F007987Metagenome / Metatranscriptome341Y
F010784Metagenome / Metatranscriptome299Y
F011676Metagenome288Y
F013520Metagenome / Metatranscriptome270Y
F015863Metagenome / Metatranscriptome251Y
F020078Metagenome / Metatranscriptome226Y
F021340Metagenome219Y
F025086Metagenome / Metatranscriptome203Y
F026499Metagenome197N
F029474Metagenome188Y
F032172Metagenome / Metatranscriptome180Y
F034358Metagenome / Metatranscriptome175Y
F034564Metagenome / Metatranscriptome174Y
F036981Metagenome169Y
F042428Metagenome158Y
F043097Metagenome157N
F045732Metagenome / Metatranscriptome152N
F052832Metagenome142N
F063410Metagenome / Metatranscriptome129N
F068533Metagenome124N
F069384Metagenome / Metatranscriptome124Y
F069422Metagenome / Metatranscriptome124Y
F070441Metagenome / Metatranscriptome123Y
F073626Metagenome120Y
F076203Metagenome / Metatranscriptome118Y
F078804Metagenome116N
F080568Metagenome / Metatranscriptome115Y
F084328Metagenome112N
F089577Metagenome / Metatranscriptome109Y
F089945Metagenome / Metatranscriptome108Y
F090480Metagenome / Metatranscriptome108Y
F094081Metagenome / Metatranscriptome106Y
F094088Metagenome106N
F098110Metagenome104N
F102094Metagenome / Metatranscriptome102Y
F103567Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207547_100025All Organisms → cellular organisms → Bacteria2203Open in IMG/M
Ga0207547_100036All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2067Open in IMG/M
Ga0207547_100077All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium1839Open in IMG/M
Ga0207547_100505All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1230Open in IMG/M
Ga0207547_100648Not Available1136Open in IMG/M
Ga0207547_101157All Organisms → cellular organisms → Bacteria953Open in IMG/M
Ga0207547_101221All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860938Open in IMG/M
Ga0207547_101262Not Available927Open in IMG/M
Ga0207547_101300Not Available917Open in IMG/M
Ga0207547_101611Not Available852Open in IMG/M
Ga0207547_101653All Organisms → cellular organisms → Bacteria845Open in IMG/M
Ga0207547_101705Not Available837Open in IMG/M
Ga0207547_101865All Organisms → cellular organisms → Bacteria813Open in IMG/M
Ga0207547_102135All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium780Open in IMG/M
Ga0207547_102195Not Available772Open in IMG/M
Ga0207547_102334All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium755Open in IMG/M
Ga0207547_102647Not Available724Open in IMG/M
Ga0207547_103306All Organisms → cellular organisms → Bacteria672Open in IMG/M
Ga0207547_103552All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium655Open in IMG/M
Ga0207547_103709Not Available645Open in IMG/M
Ga0207547_103868All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium635Open in IMG/M
Ga0207547_104192All Organisms → cellular organisms → Bacteria → Proteobacteria618Open in IMG/M
Ga0207547_104580All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium599Open in IMG/M
Ga0207547_104943Not Available585Open in IMG/M
Ga0207547_104991All Organisms → cellular organisms → Bacteria583Open in IMG/M
Ga0207547_105790Not Available553Open in IMG/M
Ga0207547_105856Not Available552Open in IMG/M
Ga0207547_105950All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia548Open in IMG/M
Ga0207547_106022Not Available546Open in IMG/M
Ga0207547_106557Not Available530Open in IMG/M
Ga0207547_106743Not Available524Open in IMG/M
Ga0207547_106811All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium523Open in IMG/M
Ga0207547_106838All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia522Open in IMG/M
Ga0207547_107015All Organisms → cellular organisms → Bacteria517Open in IMG/M
Ga0207547_107031All Organisms → cellular organisms → Bacteria517Open in IMG/M
Ga0207547_107043Not Available517Open in IMG/M
Ga0207547_107506All Organisms → cellular organisms → Bacteria → Acidobacteria505Open in IMG/M
Ga0207547_107633All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207547_100025Ga0207547_1000251F007536LTPPSPPGRGARVEELTCFVNMRLAMDMLNLHLRLIRSALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR
Ga0207547_100036Ga0207547_1000361F084328MRPKNAAPSVSDACPDWEAPAFTKLPIASRTGSGANVANDAPRAIEPEAPGQPLSKLGFSFEMSFPMSS
Ga0207547_100077Ga0207547_1000773F073626MGKKEKNTIAAKAKKLLNTSTSPELLTKPVSASVTPLKQEPGKPETDFYSKP
Ga0207547_100505Ga0207547_1005052F021340MRHSKLQTFQAHRTIARANVARSQFWHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWG
Ga0207547_100648Ga0207547_1006481F070441MRISTLDISGTTTTVRRHEALLRFARYLLVYNLAIISWVVISKLSQMPSFEGLLEWLTGPTWKFAALVLGSVGASYLILAHRLWWAYAVIMLAQVVYFFSAGSAELAVMRASVLFAYGVITLPPMRPLAPLATDIAVMVICFCYIMIVLCLYSAAWVASGGRVPQGAYGRRPTPLEPLRPSRLLDTFLPGHRSQDVTLWEGAVFALSSLLFVAASMAPFYGIRRVQNAFQSTFATQVQQVCPAQPPEAMIACWAQFYPWSRVAIDLGAPIVIAVICLVLANRLRHFGRQHFINRLAELKVLPAASTLFLRAFRDDQVRIRRA
Ga0207547_100856Ga0207547_1008561F102094TLGGSAMYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS
Ga0207547_101157Ga0207547_1011572F032172ISMMQLEGEEPVQIIRGRFGPSGGIVPELDKDGQVVPTGHFNNRLGFHALMQAVGVDERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF
Ga0207547_101221Ga0207547_1012212F013520MHPAETYRRRAERAERDFENARDPKAKRFAQVAAQRWRELAELAERQETEGAPIPPHFRDASEAVHYAQAQGYLLYWKGTPAFTKRQRELGGRFATLPVFTRKGSTYVGLVPLDRQKKKA
Ga0207547_101262Ga0207547_1012621F020078VDVLFKEFGPTIATAMLQAEKREMRTAIIIRWQSGAIALTAIVLAFLVPGVLLCKLVPLVSIASAIAITTLIAGAGLYLAGRLIEKRTPRSERVDHYLQASIFVIAAGLLWLHVIFQTGAWQDRSIEPGTALAIATGCGIAGALLLIRRT
Ga0207547_101300Ga0207547_1013003F045732IDTHKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWVATVIDWTRRAA
Ga0207547_101611Ga0207547_1016111F078804MNFVYATLCSVAVLVLCGATVPAFGHVKKAPTNQSAGKAIKKQASVFDSDGYRLVSPNSTMRCAQTLRGTLDCKE
Ga0207547_101653Ga0207547_1016531F076203SRPQESGSGRFSKGAVMASNDGQQKGPQKHAEGQHGDAAHAAFIDDLHGKHGGSEESEGAPQAENSDLPIAGNHRLSEDREQHDEAEKNSEANRLRR
Ga0207547_101705Ga0207547_1017052F002315MKRVAALSMAIVATAAFAAENKTFRYTCRGGMFAVTAAIDASGKWSKDEPVILQIGVEPPQTLVADPDAPDADSYRNKDYEFYALQTFITLTRKSHGVVVKTYNACRVE
Ga0207547_101865Ga0207547_1018651F025086MKKPIYAALDLHSRMSVLGSMDHDGQTQPRMRFPTEASILRGEVERLRRKRRPLYLTMEAGALTRWASGIVRPLVERLIICEPRHNRLINSNPTKSDEADVEGMCLLLRLGKLKEVWMGTDRTREIYRALVYELLNWRDAQRELKALIKARYRGWGVLRLHGIRVFSAKGRQEYLAQLPAEEERRMMRRLYGQLDHALKQWKETLQEVQRVGGKFWEVEQ
Ga0207547_102135Ga0207547_1021351F094088FSLHTPSIKIKVYPADISRLKNYHDIKDIVQTPKESAHSKTNSVIGLIAVIVLIIVLWAVLKRRRIKSKTLAKKGMLNSIDWILEQLTLLEKKQIPDKDAVKEYYQQLYQLCRQYFSIEFDINVLYCTTEEWVGILEGVELDKKNKAAFYELVKKADSVRFADRDIAEKQNEEISTARNFVKALHRLKTGSPDKN
Ga0207547_102195Ga0207547_1021951F043097WLQLYLPPRFRRTQRYSQLQVCYLWTNDLQKLKRVFIILEFLAGFIFGVLGGYAFSFFDRYNSLDTSIVLAFTSAFIALLTGVGIIGFIHLKKIGRARYFAQSVAFSFLGLVVFVVWYILIELVTYQALPYYIGSFLLPIILPLTGAVLGFNFKIFRSASQ
Ga0207547_102334Ga0207547_1023341F007885EQKWYALTGRVVDAKVEADGDIHIALEDATGNNVGTVSAEIPVGPKWCEIRQTVFGWTTQKFPFGVKTAHALKIREPHVITVTGKAFYDIGHAPADHSNRRSTPTGYAVWEIHPVMKMEVIP
Ga0207547_102647Ga0207547_1026472F090480MNKIFACIVFTATSGFSFAVATAMPLVPMGTEQARLTIPVADGCGFNRYRDARGICRKKYVITRHQGRQPVYTGCGGLNS
Ga0207547_103306Ga0207547_1033061F052832AFRDGFYDGRQGCPMRRLATRKARWLYALGRIFANLAPTNLQVYEQRHATEAAVAAFKAMPVRYMAR
Ga0207547_103552Ga0207547_1035521F002103MSTDEPFRTDYELLKGVDYIFVSLDRNLSGEECHQLAEKYFETHQGMTLPGQALRVDLRPAFGKPLADVTPKFRAVSIGYTFTPQR
Ga0207547_103709Ga0207547_1037091F080568MAATPSIKITKQFTYRGVTKQFSNRYHFNGGTPADNAHWTTLADAIVTAEKVCYSSVVTIVKATGYAAGSEVPVFTKTYSTVGTSVWTGGTQTPGDCAAVVRYATAVRTAKNHPIYLFNYYHGAYNAAGAPDTLIAAQSGQLQAYANTWIGAGFSDGTTSYNRAGPNGA
Ga0207547_103868Ga0207547_1038682F001757MMRVLKPLQDKATTGAGKRLVLPEPRRIRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVSRGRPDRPDRTKVV
Ga0207547_104192Ga0207547_1041922F068533LFLASVQFARSDQGLTGDVRTTFIEAATRSCLKTQLDAPTNKDVPVSALYDYCKCNASGMADKTSNDEVKTLEATGSEEKYRTAMQTRMESSAKTCLDEIRKSLPK
Ga0207547_104580Ga0207547_1045802F034358LVLRVGFPLRFVFAILRSSLLLIDFAIWRDAPLSDDLERLPRFAASAAPVAICCFF
Ga0207547_104943Ga0207547_1049431F015863MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVKRFYTEQLTAAGFEVSDLGLMGLNPMTAAYLGVDGMLSAKRHATDDAIDV
Ga0207547_104991Ga0207547_1049911F000268MRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMVQPQKLIPGRVYAAFATDVQGGSSGVTFGFDKNGKMIFPDSFDSMSGE
Ga0207547_105037Ga0207547_1050371F094081MRDDQGKILKKEFVERFDKAKGRLQQSVPEIQHLLKTSNVVEAARKIIDPAQSIFKQFADDIQLKDLFAKAEALVANLTVAKSVSRDTPPTETSPSETPASKLPSKKASLKKAPSKGVRSRKPLKKTPLKTR
Ga0207547_105790Ga0207547_1057901F034564NGRTQTGGMNRSGRLSGYWYGAVCIAGLGFGLLGERRPFGQGILAHPFIVYAFVVAAGLLVIRVVRQQPVPELIPERALGLGCAAGVALFLAGNFIAAHLIGR
Ga0207547_105856Ga0207547_1058562F089945QPGPPKRVTTFARGFDHPLALVVDKSGALLVADWGTGVIYRIQSAGG
Ga0207547_105864Ga0207547_1058641F010784MLTASIFEGDRHGRSAPIGPQDADGSHRCSRAAHLSPLMLLAVGICFFALPALGAQTSDSQTGDADKSWTATTESQSDNVNPTRTSVSHTQTGNRTLDSQSIQRRGPDGHFEPYQDIEKETVKVDATTVRTITRAFARDADGAKILVQVTEEERHTSPAGDSSVVRSVSNPD
Ga0207547_105901Ga0207547_1059012F069422IDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG
Ga0207547_105950Ga0207547_1059502F098110NDQRKGDEGEQNVRRQHWKINCCQPTAKAGRFFPDVNVIGDIANEKKGGGNDRCNHANDVALPKISPDKIPAGRNENGTNKIERGIDCR
Ga0207547_106022Ga0207547_1060221F026499LARQSAELNRRLTEILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQQKSMLEIRLQEKEALAATQAATIKQLEGVRDELDK
Ga0207547_106079Ga0207547_1060791F063410VENAGVPDTPQGEQAANAISGWADKTRTDLEDAQDSLDDEADTLADAIAQLTDAARAITGAVTGGVKAVADVARTDPELAAALRDSSTCQQLREETTS
Ga0207547_106557Ga0207547_1065571F103567TLVSASKADNPDSFAVFYGEDCVGHIMRTQKSPPGKPWFWTIFVSDKHSSIVDRGYAATHEQAMADFEALWLRLLRSLEKERTPGTIRPRLFTQTPHQKSTQPN
Ga0207547_106743Ga0207547_1067432F069384TIHNLNEMKAAVQENDSQTKLLVLGLGEAILTTCGMARVFLGNNPSFGDEPKSTS
Ga0207547_106811Ga0207547_1068111F089577GGADPLLVSHGDESGPKKLRFSAEDDYQRRHGHGTAVWLSAF
Ga0207547_106838Ga0207547_1068382F036981MESHAFVVGLIVGILATVTMDVVAMMALWLGIASRGPRRTGPDLIGRWIGYLLQGKFRHTDILQT
Ga0207547_107015Ga0207547_1070151F029474KEFQDLLAQAKGDTSELIRQNAQELEARLILLKKRKIDKEDFDFFVENQKRDLRVFVDSQPAQAQERAEKLTLHILEIAATKVVPVLIMMI
Ga0207547_107031Ga0207547_1070311F007987MAKQTSNKAVGQAEQECSFSATTIAALLFLAAKFPHRQFNSSELCVLSGIGRTAMSQIKNTADSPFSLGKCTLQRLDGWLAKHPGFKQQ
Ga0207547_107043Ga0207547_1070431F042428RLRLSYGEALLGNAQYAEACGELEKLKGKGLGPRDLGLPAARACMLKGDADAAIAWLTTIPTRFLPPDVQTDAVFAPLRTREDFRALFSSR
Ga0207547_107506Ga0207547_1075061F004456MAYKETFWMACDSTEQLRAEYGPFHTREEAESEARKLGFGYLLRYEHIMGEDDEIQEVRCVFIELPGAGATVIPIRPNLHTRCATCGESATHDEPW
Ga0207547_107633Ga0207547_1076331F011676FGHPHVTVADDGRLVLGGKTVRGPLAISNFAVRAQLTGAAMVARGADYELWRPKGTPRMALFVGGLYHTGWLAPAGHLTVWPARSGRVKGTLRVPLSLPAGTKRTVLHLEGPGVDRRVAVSPGQNRVVTIGVDYRGPWTLSFHSSRIGYLQPDDTPVSVRSATPRFS

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