Metagenome / Metatranscriptome Family F102094

Overview

Basic Information

• Family ID: F102094
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 102
• Average Sequence Length: 47 residues
• Representative Sequence: MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKQPHA
• Number of Associated Samples: 92
• Number of Associated Scaffolds: 102

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 0.98 %
• % of genes from short scaffolds (< 2000 bps): 0.98 %
• Associated GOLD sequencing projects: 85
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (99.020 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.706 % of family members)
• Environment Ontology (ENVO): Unclassified (34.314 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (57.843 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 12.33%
  β-sheet: 30.14%
  Coil/Unstructured: 57.53%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04392	ABC_sub_bind	22.55
PF00216	Bac_DNA_binding	5.88
PF02110	HK	2.94
PF07885	Ion_trans_2	1.96
PF11737	DUF3300	1.96
PF07976	Phe_hydrox_dim	1.96
PF00072	Response_reg	0.98
PF00106	adh_short	0.98
PF03976	PPK2	0.98
PF03729	DUF308	0.98
PF01037	AsnC_trans_reg	0.98
PF02566	OsmC	0.98
PF00685	Sulfotransfer_1	0.98
PF12821	ThrE_2	0.98
PF08543	Phos_pyr_kin	0.98
PF02581	TMP-TENI	0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	22.55
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	5.88
COG0063	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate dehydratase domain	Nucleotide transport and metabolism [F]	2.94
COG2145	Hydroxyethylthiazole kinase, sugar kinase family	Coenzyme transport and metabolism [H]	2.94
COG0351	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Coenzyme transport and metabolism [H]	0.98
COG0352	Thiamine monophosphate synthase	Coenzyme transport and metabolism [H]	0.98
COG0524	Sugar or nucleoside kinase, ribokinase family	Carbohydrate transport and metabolism [G]	0.98
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.98
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.98
COG2240	Pyridoxal/pyridoxine/pyridoxamine kinase	Coenzyme transport and metabolism [H]	0.98
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.98
COG2870	ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.98

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
All Organisms	root	All Organisms	0.98 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
cellular organisms	root	All Organisms → cellular organisms	0.98 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300032174|Ga0307470_10225587	All Organisms → cellular organisms → Bacteria → Proteobacteria	1218

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.73%
Host-Associated	Host-Associated	36.27%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.80%
Plants	Host-Associated → Plants	35.29%
Aquatic	Environmental → Aquatic	3.92%
Human	Host-Associated → Human	0.98%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.73%
Sediment	Environmental → Aquatic → Sediment	3.92%
Digestive System	Host-Associated → Human → Digestive System	0.98%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.20%
Loam	Environmental → Terrestrial → Soil → Loam	19.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	19.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.96%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300001433	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated
3300003321	Sugarcane bulk soil Sample H1	Environmental
3300003349	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM	Host-Associated
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental
3300023260	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6	Environmental
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated
3300026741	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-C (SPAdes)	Environmental
3300026807	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-11 (SPAdes)	Environmental
3300026939	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-12 (SPAdes)	Environmental
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental
3300027425	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-10 (SPAdes)	Environmental
3300027431	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-11 (SPAdes)	Environmental
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_115332212	3300000891	Soil	MYVLIIVIGVLSQGASIVPVGVTSQIVGKFKNLDE
JGI24036J14985_1031451	3300001433	Corn, Switchgrass And Miscanthus Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKQPHAAGPIADITVV
JGI24750J21931_10502682	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAA
JGI24742J22300_100643002	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNXDECKAAA
soilH1_102431462	3300003321	Sugarcane Root And Bulk Soil	MYALIIVIGMVSPGAAVTPVGATGQIVGKFKTLDRCKESRK*
JGI26129J50193_10165151	3300003349	Arabidopsis Thaliana Rhizosphere	MYVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDECKAAAKQPH
Ga0058860_121665652	3300004801	Host-Associated	LIIVIGVLSSDKPAGSAVSIGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS*
Ga0066823_100896002	3300005163	Soil	MYALIIVIGVISSGSSVIPVGVTSQIVGKFKNLDECKAAASQPHAGGPVADI
Ga0066869_100465921	3300005165	Soil	MYALIMVIGMLSPATSAVVPVGVTSQIVGKFKTKDECEAAASRPVAGGTISDLSL
Ga0066810_100632611	3300005169	Soil	MYALIIVIGMLSQGAGSAVMPVGVTSQIVGKFKNLDECKAAASQPHA
Ga0065712_100916593	3300005290	Miscanthus Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS*
Ga0070676_105732821	3300005328	Miscanthus Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAK
Ga0070676_109219502	3300005328	Miscanthus Rhizosphere	MRRLSDVLIIVIGVLSQGASIVPVGVTSQIVRKFKNLDECKA
Ga0068869_1000269271	3300005334	Miscanthus Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAA
Ga0070682_1001464383	3300005337	Corn Rhizosphere	MYALIIVIGMLSQGAGSAVMPVGVTSQIVGKFKNLDECKTAASQPHAGGPV
Ga0070660_1001983132	3300005339	Corn Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKQPH
Ga0070691_108345611	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MYALIIVIGMLSQGAAGSAVIPVGVTSQIVGKFKNLDECKAAASQPHAGGPV
Ga0070691_110191661	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	IGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS*
Ga0070703_100043386	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAK
Ga0070710_104388163	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MYTLIIVIGVLSQGASIMPIGVTSQIVGKFKNLDECQAAAKQPHAA
Ga0070711_1003197491	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MYTLIIVIGVLSQGASIMPIGVTSQIVGKFKNLDECQAAAKQPHAAG
Ga0070711_1005464041	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MYALIIVIGMLSQGAAGSAVIPVGVTSQIVGKFNNLDEYKAAASQPHAGGPVSDL
Ga0070705_1006828952	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MYALIIVIGVLSSGSPGLGIPIGVTSQIVGNFKTLDECKAAASEP
Ga0070700_1001207393	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKQPHAAGP
Ga0070694_1012772242	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MYALIIVIGVLSPGSPGLGIPIGVTSQIVGKFQTLDECKAAASEPYATG
Ga0070662_1000347766	3300005457	Corn Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHAAGPI
Ga0070681_108921451	3300005458	Corn Rhizosphere	MRRLSDVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDECKAAA
Ga0070681_118828751	3300005458	Corn Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHAAGPIADITV
Ga0070679_1000536426	3300005530	Corn Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQ
Ga0070704_1003365131	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKQPHAAGPIADITV
Ga0070664_1002407791	3300005564	Corn Rhizosphere	MYALIIVIGMLSQGASSAVMPVGVTSQIVGKFENLDQ*
Ga0068858_1002764701	3300005842	Switchgrass Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKQPHAAGPIA
Ga0075023_1001145721	3300006041	Watersheds	MYALIIVIGVLSSGSSVVPIGVTSQIVGKFKNLDECKAAASQPHAAGPVADI
Ga0105243_116317281	3300009148	Miscanthus Rhizosphere	MYALIIVIGMLSQGAAGSAVIPVGVTSQIVGKFKN
Ga0105248_110348471	3300009177	Switchgrass Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAATKHPTPQVLLRISLS*
Ga0105238_105535963	3300009551	Corn Rhizosphere	MYALIIVIGMLSQGAGSAVMPVGVTSQIVGKFKNLDECKTAASQ
Ga0134126_101449871	3300010396	Terrestrial Soil	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS*
Ga0157319_10102712	3300012497	Arabidopsis Rhizosphere	MYVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDECKAAAKQ
Ga0137398_108882411	3300012683	Vadose Zone Soil	MYALIIIIGMSGVSGGVTSQIVGKFKSLDECKAAASQPHAGGPIADLGLSATWG
Ga0157308_102637631	3300012910	Soil	MYALIIVIGVLSSDKPAGSAVSIGVTSQIVGKFKNLDECKAAASQPHATAPAED
Ga0164300_100325503	3300012951	Soil	MYMLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS*
Ga0164303_100235781	3300012957	Soil	ITGGLAMYALIIVIGMLSQGASSAVMPVGVTSQIVGKFENLDQ*
Ga0164299_100252715	3300012958	Soil	MYALIIVIGMLSQGAGSAVMPVGVTSQIVGKFKNLDECKAAASQPHAGGPIS
Ga0164299_102768101	3300012958	Soil	MYVLIIVIGVLSQGASIVPVGVTSQIVGKFKNLDECK
Ga0164299_104503152	3300012958	Soil	MYALIIVIGVLSSGSPGLGIPIGVTSQIVGNFKTLDECKAA
Ga0164307_101072711	3300012987	Soil	MYALIIVIGMLSQGAGSAVMPVGVTSQIVGKFKNLDECKTAASQPHA
Ga0164306_100536131	3300012988	Soil	MYALIIVIGMLSQGAGSAVMPVGVTSQIVGKFKNLDECKTA
Ga0157307_10185051	3300013096	Soil	MRRLSDVLIIVIGVLSQGASIVPVGVTSQIVGKFKN
Ga0157307_10736311	3300013096	Soil	ILTKSLFAGCTTLGGSAMYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS*
Ga0157375_101393891	3300013308	Miscanthus Rhizosphere	HTIICYKATTGGLAMYALIIVIGMLSQGASSAVMPVGVTSQIVGKFENLDQ*
Ga0157380_127021732	3300014326	Switchgrass Rhizosphere	MYRLIIVIGMLSPATGSVVPVGVTSQVVGKFESLEQCKAAASQPGAGGTISEL
Ga0157377_103485232	3300014745	Miscanthus Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKQPHA
Ga0157379_113546561	3300014968	Switchgrass Rhizosphere	MYMLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKA
Ga0182039_114396502	3300016422	Soil	MYTLIIVIGMLSPPSTTGSVTPLGVTSQIVGKFKSLD
Ga0184608_103205262	3300018028	Groundwater Sediment	MYALIIVIGVLSSGSSVIPVGVTPQLIGKFKNLDDCKAAASQPHAGGTIPDFNFPTTGAN
Ga0173481_103562611	3300019356	Soil	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS
Ga0222622_108612732	3300022756	Groundwater Sediment	MYALIIVIGVLSSGSSVIPVGVTPQLIGKFKNLDECKAAASQPHAGGTIPDFNFPTTGAN
Ga0247792_10010557	3300022880	Soil	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHAAG
Ga0247798_10666761	3300023260	Soil	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDE
Ga0247800_10064811	3300023263	Soil	MYVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDEC
Ga0207653_100052461	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAATK
Ga0207682_100801552	3300025893	Miscanthus Rhizosphere	MYTLIIVIGMLSPATGSVVPVGVTSQVVGKFESLEQCKAAASQPG
Ga0207685_100871893	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MYALIIVIGMLSQGAAGSAVIPVGVTSQIVGKFKNLDECKAAASQPHAGGPVSDLSLS
Ga0207643_1000056824	3300025908	Miscanthus Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRIS
Ga0207707_103165913	3300025912	Corn Rhizosphere	MYALIIVIGMLSQGAAGSAVIPVGVTSQIVGKFKNLDECKAAASQPHAG
Ga0207693_111467561	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MYALIIVIGMLSPTTSLAAGVTSQIVGKFEDLDQCRAA
Ga0207687_1000260713	3300025927	Miscanthus Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHAAGP
Ga0207670_104703022	3300025936	Switchgrass Rhizosphere	GGSAMYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS
Ga0207669_102971831	3300025937	Miscanthus Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHAA
Ga0207711_102444401	3300025941	Switchgrass Rhizosphere	MYALIIVIGMLSQGAAGSAVIPVGVTSQIVGKFKNLDECKAA
Ga0207711_121164101	3300025941	Switchgrass Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFENLDQ
Ga0207661_109059552	3300025944	Corn Rhizosphere	MYALIIVIGMLSQGAAGSAVIPVGVTSQIVGKFKNLDEYKAAA
Ga0207667_111949941	3300025949	Corn Rhizosphere	MYALIIVIGMLSQGAGSAVMPVGVTSQIVGKFKNLDECKTAASQPHAGGP
Ga0207651_100084905	3300025960	Switchgrass Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHAAGPIADSLS
Ga0207712_116312221	3300025961	Switchgrass Rhizosphere	VLIIVIGVLSQGASIVPVGVTSQIVRKFKNLDECK
Ga0207658_107061801	3300025986	Switchgrass Rhizosphere	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKQPHAA
Ga0207658_109443121	3300025986	Switchgrass Rhizosphere	MYALIIVIGMLSQGAAGSAVIPVGVTSQIVGKFKNLDECKAAASQP
Ga0207703_1000558512	3300026035	Switchgrass Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQ
Ga0207648_102807361	3300026089	Miscanthus Rhizosphere	MYVLIIVIGVLSQGASIVPVGVTSQIVGKFKNLDECKAAAKQPHAAGPVADITVV
Ga0207510_1043511	3300026741	Soil	MYVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDECKAAAKQPHAAGPIAD
Ga0207547_1008561	3300026807	Soil	TLGGSAMYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS
Ga0207542_1003841	3300026939	Soil	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHA
Ga0208525_10066413	3300027288	Soil	MYALIIVIGVISSGSSVIPVGVTSQIVGKFKNLDECKAAASQPHAGGPVADITL
Ga0207522_1022031	3300027425	Soil	MYVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDECKAAAKHPTPQVLLRISLS
Ga0207437_1008782	3300027431	Soil	MYVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDECKAAAKQPHAA
Ga0210002_10075351	3300027617	Arabidopsis Thaliana Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDEC
Ga0209974_101924771	3300027876	Arabidopsis Thaliana Rhizosphere	MYVLIIVIGVLSQGASIVPVGVTSQIVGKFKNLDECKAAAKQPHAAGPVADIT
Ga0207428_104549881	3300027907	Populus Rhizosphere	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKHPTPQVL
Ga0209583_100375591	3300027910	Watersheds	MYALIIVIGVLSSGSSVVPIGVTSQIVGKFKNLDE
Ga0268265_109233163	3300028380	Switchgrass Rhizosphere	MYTLIIVIGMLSPATGSVVPVGVTSQVVGKFESLEQCKAAASQPGAGGTISELNL
Ga0307299_102273911	3300028793	Soil	MYALIIVIGVLSSGSSVIPVGVTPQLIGKFKNLDECKAAASQPHAGGTIPDFNFPTT
Ga0307287_103614241	3300028796	Soil	MYTLIIVIGMSGVSGGVTSQIVGKFRNLDDCKSAASQPHAAGT
Ga0307292_103092791	3300028811	Soil	MYALIVVIAVLGGTVTPVGVGSQVVGKFKNLDQCKAAASQPSAGGAISDLGL
Ga0170834_1136830011	3300031057	Forest Soil	MYALIIVIGVLSSGSSVVPIGVTSQIVGKFKNLEECKAAASQP
Ga0307497_102813031	3300031226	Soil	MYALITVIGVLSSGSSVIPVGVTSQLVGKFKTLDDCKAAASQPHAGGTIPDFNF
Ga0170824_1083623462	3300031231	Forest Soil	MYALIIVIGVLSTGSSVIPVGVTSQIVGKFKNLDECKAAASQPHA
Ga0170818_1075637872	3300031474	Forest Soil	MYALIIVIGVLSTGSSVIPVGVTSQIVGKFKNLDECKAAASQPHAAGPVADIT
Ga0170818_1129345511	3300031474	Forest Soil	MYALIIVIGVLSSGSSVVPIGVTSQIVGKFKNLDECKAAASQPHAAGPVADIT
Ga0310888_101578491	3300031538	Soil	MYVLIVVIGVLSQGASVVPVGVTSQIVGKFKNLDECKAAAKHPTPQVLLRISLS
Ga0306923_110994932	3300031910	Soil	MYALIIVIGMLSPNTSIAAGVTSQIVGKFENLDQC
Ga0310902_110993051	3300032012	Soil	MYALIVVIGMLSPATGSVVPVGVTSQIVGKFENLDQCKAAGSQPMAGGTI
Ga0307470_102255875	3300032174	Hardwood Forest Soil	MYALIIVIGVMSSAIPVGVTSQTVGKFESLDKCKAAASEPQAGGAVLDLN