Metagenome / Metatranscriptome Family F089945

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089945
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	42 residues
Representative Sequence	VTTFADGFAHPLALLVDRDGGLLVADWGRGVVYRIQARGRT
Number of Associated Samples	102
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.86 %
% of genes near scaffold ends (potentially truncated)	93.52 %
% of genes from short scaffolds (< 2000 bps)	93.52 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.074 % of family members)
Environment Ontology (ENVO)	Unclassified (34.259 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.556 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 21.74% Coil/Unstructured: 78.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00472	RF-1	10.19
PF07099	DUF1361	6.48
PF13189	Cytidylate_kin2	5.56
PF13344	Hydrolase_6	5.56
PF12697	Abhydrolase_6	5.56
PF01293	PEPCK_ATP	3.70
PF11798	IMS_HHH	2.78
PF11354	DUF3156	2.78
PF05988	DUF899	2.78
PF00171	Aldedh	2.78
PF11790	Glyco_hydro_cc	1.85
PF02151	UVR	1.85
PF00211	Guanylate_cyc	1.85
PF01435	Peptidase_M48	1.85
PF02608	Bmp	1.85
PF04307	YdjM	1.85
PF03061	4HBT	0.93
PF02873	MurB_C	0.93
PF01391	Collagen	0.93
PF07730	HisKA_3	0.93
PF13520	AA_permease_2	0.93
PF00480	ROK	0.93
PF13229	Beta_helix	0.93
PF00150	Cellulase	0.93
PF01887	SAM_HAT_N	0.93
PF13302	Acetyltransf_3	0.93
PF03853	YjeF_N	0.93
PF00440	TetR_N	0.93
PF01743	PolyA_pol	0.93
PF12680	SnoaL_2	0.93
PF00817	IMS	0.93
PF03551	PadR	0.93
PF01520	Amidase_3	0.93
PF01436	NHL	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	10.19
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	10.19
COG4330	Uncharacterized membrane protein, DUF1361 domain	Function unknown [S]	6.48
COG1866	Phosphoenolpyruvate carboxykinase, ATP-dependent	Energy production and conversion [C]	3.70
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	2.78
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	2.78
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	2.78
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	2.78
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.85
COG1988	Membrane-bound metal-dependent hydrolase YbcI, DUF457 family	General function prediction only [R]	1.85
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.85
COG1744	Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN	Signal transduction mechanisms [T]	1.85
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.93
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.93
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.93
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.93
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.93
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.93
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	0.93
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.93
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.93
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.93
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0812	UDP-N-acetylenolpyruvoylglucosamine reductase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0617	tRNA nucleotidyltransferase/poly(A) polymerase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	0.93
COG0062	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domain	Nucleotide transport and metabolism [F]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.00 %
Unclassified	root	N/A	16.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	46.30 %
Unclassified	root	N/A	16.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.41 %
Unclassified	root	N/A	16.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	30.56 %
Unclassified	root	N/A	16.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.56 %
Unclassified	root	N/A	16.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.56 %
Unclassified	root	N/A	16.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.93 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.56 %
Unclassified	root	N/A	16.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.93 %
Micromonospora rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora rhizosphaerae	0.93 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.56 %
Unclassified	root	N/A	16.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Streptomyces sp. Ag109_O5-1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Ag109_O5-1	0.93 %
Micromonospora rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora rhizosphaerae	0.93 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10432352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	691	Open in IMG/M
3300002568\|C688J35102_119858180	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300004114\|Ga0062593_102902404	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300004153\|Ga0063455_100663948	All Organisms → cellular organisms → Bacteria → Terrabacteria group	693	Open in IMG/M
3300004157\|Ga0062590_102342524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300004479\|Ga0062595_100325543	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300004479\|Ga0062595_100459698	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300005093\|Ga0062594_102451972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	571	Open in IMG/M
3300005178\|Ga0066688_10695889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300005347\|Ga0070668_100616241	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300005365\|Ga0070688_100397877	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300005438\|Ga0070701_10584993	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300005441\|Ga0070700_101192575	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300005457\|Ga0070662_100176671	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300005458\|Ga0070681_10690055	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300005518\|Ga0070699_101184443	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300005545\|Ga0070695_101655176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300005554\|Ga0066661_10901744	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005617\|Ga0068859_102794815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300005719\|Ga0068861_100049054	All Organisms → cellular organisms → Bacteria	3195	Open in IMG/M
3300005842\|Ga0068858_102198729	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006058\|Ga0075432_10138760	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300006953\|Ga0074063_10079890	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300006954\|Ga0079219_10456500	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300009094\|Ga0111539_11667965	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300009176\|Ga0105242_10580809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1079	Open in IMG/M
3300010036\|Ga0126305_11136909	Not Available	538	Open in IMG/M
3300010038\|Ga0126315_10061370	All Organisms → cellular organisms → Bacteria	2071	Open in IMG/M
3300010039\|Ga0126309_10450310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	782	Open in IMG/M
3300010041\|Ga0126312_11106777	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300010166\|Ga0126306_10118953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1931	Open in IMG/M
3300010321\|Ga0134067_10312456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M
3300010373\|Ga0134128_10655457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1167	Open in IMG/M
3300010397\|Ga0134124_11882850	All Organisms → cellular organisms → Bacteria → Terrabacteria group	633	Open in IMG/M
3300010401\|Ga0134121_11614631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	668	Open in IMG/M
3300010863\|Ga0124850_1084898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	932	Open in IMG/M
3300011992\|Ga0120146_1012668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1726	Open in IMG/M
3300011992\|Ga0120146_1030716	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300012207\|Ga0137381_11573618	Not Available	548	Open in IMG/M
3300012212\|Ga0150985_110225847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	770	Open in IMG/M
3300012482\|Ga0157318_1030626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300012501\|Ga0157351_1015897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	748	Open in IMG/M
3300012502\|Ga0157347_1012217	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	923	Open in IMG/M
3300012903\|Ga0157289_10218115	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300012910\|Ga0157308_10029863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1293	Open in IMG/M
3300012937\|Ga0162653_100088780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300012939\|Ga0162650_100003295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1754	Open in IMG/M
3300012961\|Ga0164302_10730036	Not Available	738	Open in IMG/M
3300012975\|Ga0134110_10047331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1694	Open in IMG/M
3300013770\|Ga0120123_1023560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1252	Open in IMG/M
3300014326\|Ga0157380_11328771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	767	Open in IMG/M
3300014823\|Ga0120170_1054126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	891	Open in IMG/M
3300014969\|Ga0157376_11279191	Not Available	763	Open in IMG/M
3300015201\|Ga0173478_10145014	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300015371\|Ga0132258_12244750	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300017789\|Ga0136617_10153688	All Organisms → cellular organisms → Bacteria	1963	Open in IMG/M
3300018052\|Ga0184638_1267194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300018072\|Ga0184635_10081458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1270	Open in IMG/M
3300018076\|Ga0184609_10139718	Not Available	1110	Open in IMG/M
3300018078\|Ga0184612_10506386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	589	Open in IMG/M
3300018081\|Ga0184625_10607865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300020202\|Ga0196964_10465473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora rhizosphaerae	615	Open in IMG/M
3300021510\|Ga0222621_1121089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300022467\|Ga0224712_10051428	Not Available	1604	Open in IMG/M
3300022534\|Ga0224452_1240872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554	Open in IMG/M
3300022756\|Ga0222622_10373144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	999	Open in IMG/M
3300022756\|Ga0222622_11238836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	549	Open in IMG/M
3300022898\|Ga0247745_1051224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300025907\|Ga0207645_10130857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1633	Open in IMG/M
3300025922\|Ga0207646_11222459	Not Available	658	Open in IMG/M
3300025925\|Ga0207650_10272425	All Organisms → cellular organisms → Bacteria → Proteobacteria	1376	Open in IMG/M
3300025929\|Ga0207664_10307519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1396	Open in IMG/M
3300025934\|Ga0207686_10364236	All Organisms → cellular organisms → Bacteria → Proteobacteria	1092	Open in IMG/M
3300025937\|Ga0207669_10152723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1620	Open in IMG/M
3300026041\|Ga0207639_10665214	Not Available	964	Open in IMG/M
3300026067\|Ga0207678_10500973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1059	Open in IMG/M
3300026078\|Ga0207702_11518864	Not Available	663	Open in IMG/M
3300026807\|Ga0207547_105856	Not Available	552	Open in IMG/M
3300027907\|Ga0207428_10070649	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2744	Open in IMG/M
3300027907\|Ga0207428_10527147	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300028281\|Ga0247689_1041807	Not Available	637	Open in IMG/M
3300028707\|Ga0307291_1149914	Not Available	594	Open in IMG/M
3300028708\|Ga0307295_10014042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1918	Open in IMG/M
3300028711\|Ga0307293_10272239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300028718\|Ga0307307_10190312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	648	Open in IMG/M
3300028719\|Ga0307301_10192015	Not Available	662	Open in IMG/M
3300028744\|Ga0307318_10117241	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300028778\|Ga0307288_10170338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	828	Open in IMG/M
3300028778\|Ga0307288_10469662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300028784\|Ga0307282_10000792	All Organisms → cellular organisms → Bacteria	10547	Open in IMG/M
3300028791\|Ga0307290_10308549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300028796\|Ga0307287_10150675	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300028799\|Ga0307284_10130116	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300028811\|Ga0307292_10070128	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300028811\|Ga0307292_10205909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	809	Open in IMG/M
3300028814\|Ga0307302_10065300	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300028819\|Ga0307296_10364134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	790	Open in IMG/M
3300028828\|Ga0307312_10561459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300028872\|Ga0307314_10065687	All Organisms → cellular organisms → Bacteria → Terrabacteria group	938	Open in IMG/M
3300028875\|Ga0307289_10444548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300028876\|Ga0307286_10308834	Not Available	585	Open in IMG/M
3300028878\|Ga0307278_10095794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1335	Open in IMG/M
3300028881\|Ga0307277_10356207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300030336\|Ga0247826_10973758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Ag109_O5-1	673	Open in IMG/M
3300031938\|Ga0308175_102235845	Not Available	613	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.70%
Host-Associated	Host-Associated	21.30%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.44%
Plants	Host-Associated → Plants	21.30%
Aquatic	Environmental → Aquatic	9.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.96%
Sediment	Environmental → Aquatic → Sediment	8.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.41%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.85%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.56%
Loam	Environmental → Terrestrial → Soil → Loam	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.56%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Ice	Environmental → Aquatic → Freshwater → Ice	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.93%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.56%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.63%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.85%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.85%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300011992	Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012482	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.130510	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300020202	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026807	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-11 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028281	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK30	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_104323522	3300000891	Soil	RVTVFASGFAHPLALLVDRRGGLLVADWGPGIVYRIHARS*
C688J35102_1198581801	3300002568	Soil	PKRVTTFASGFDHPLALVVDKSGGLLVSDWGRGVIYRIQSRGG*
Ga0062593_1029024042	3300004114	Soil	TKFASGFDHPLALAVDRTGGLLVADWGRGVIYRIQSRGG*
Ga0063455_1006639481	3300004153	Soil	PARVTSFASGFVHPLALLVDHRGGLLVADWGRGVVYRIRPA*
Ga0062590_1023425241	3300004157	Soil	ELRRDGRARRVVSFASGFEHPLALLIDRRGGLLVADWGNGMVYRIQADGQP*
Ga0062595_1003255431	3300004479	Soil	QSRVSVFARGFDHPIVVLADPAGGLLVADWGRGTIYRIRAPVS*
Ga0062595_1004596981	3300004479	Soil	FASGFAHPLALLADRGGGLLVADWGRGIVYRIQARATRRS*
Ga0062594_1024519722	3300005093	Soil	RIHFGPPRRVTTFARGFDHPLALVVDKSGALLVADWGRGAIYRIRSD*
Ga0066688_106958891	3300005178	Soil	VSFASGFVHPLALLVDRRGGLLVADWGRGVAYRIQADGRP*
Ga0070691_106318142	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VTRFAGGFAHPLALAFDGKGALLVADWERGTIYRIQRRGKP*
Ga0070668_1006162411	3300005347	Switchgrass Rhizosphere	RVTVFASGFAHPLALLADRGGGLLVADWGRGIVYRIQARATRRS*
Ga0070688_1003978771	3300005365	Switchgrass Rhizosphere	VTVFASGFAHPLALLADRGGGLLVADWGRGIVYRIQARATRRS*
Ga0070701_105849932	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	ARHVTTFASGFAHPLALLVDRKGGLLVADWGRGVVYRISQR*
Ga0070700_1011925752	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	SAFASGFGHPLALLVDPGGGLLVADWGRGVVYRIQARGHS*
Ga0070662_1001766713	3300005457	Corn Rhizosphere	VRLRPGRRAQVTSFASGFAHPLALLAGRRGGLLVADWGRGVVYRIAPR*
Ga0070681_106900551	3300005458	Corn Rhizosphere	TARKVSVFASGFAHPLALLPDRAGGLLVADWGRGIVYRIHGS*
Ga0070699_1011844433	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ELKKDGTASRVTVFASGFAHPLALLADRGGGLLVADWGRGIVYRIQARATRRS*
Ga0070695_1016551762	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	RDGRARRVVSFASGFEHPLALLIDRRGGLLVADWGSGIVYRIQADGQP*
Ga0066661_109017442	3300005554	Soil	LDRAGYARRTSVFATGFDHPLALATDRLGALLVADWGSGTIYRIQARGRR*
Ga0068859_1027948153	3300005617	Switchgrass Rhizosphere	SGFAHPLALLVDRRGGLLVADWGRGVVYRITPTA*
Ga0068861_1000490541	3300005719	Switchgrass Rhizosphere	LRPNGTARRVTVFASGFAHPLALLVDRRGGLLVADWGPGIVYRIHVRS*
Ga0068858_1021987293	3300005842	Switchgrass Rhizosphere	FAHPLALLADRGGGLLVADWGRGIVYRIQARATRRS*
Ga0075432_101387601	3300006058	Populus Rhizosphere	VSTFATGFDHPIAVTVDQRGALLVADYGRGVVYRIQARGKR*
Ga0074063_100798902	3300006953	Soil	VTTFARGFDHPLALAVDPKGGLLVADWGTGVIYRIQSRGG*
Ga0079219_104565001	3300006954	Agricultural Soil	IQLRPNGTARRVSVFASGFAHPLALLADQRGGLLVADWARGVVYRFS*
Ga0111539_116679653	3300009094	Populus Rhizosphere	VRVHLGPPRRVTTFARGFDHPLALVVDKSGALLVADWGRGAIYGIQSTGR*
Ga0105242_105808091	3300009176	Miscanthus Rhizosphere	AQSRVSVFARGFDHPIAVLADPAGGLLVADWGRGTIYLIRAPVS*
Ga0126305_111369092	3300010036	Serpentine Soil	HLGPPRRVTTFARGFDHPLALVVDKSGALLVADWGRGVIYRIQSTGR*
Ga0126315_100613705	3300010038	Serpentine Soil	EGRPAAVSTFATGFEHPIAVALDPAGGLLVADYGRGVVYRISKR*
Ga0126309_104503102	3300010039	Serpentine Soil	FAHPLALLVDRRGGLLVADWDRGVVYRIQARGRR*
Ga0126312_111067771	3300010041	Serpentine Soil	PGAVSTFATGFDHPIAVTVDPLGALLVADYGRGVVYRIQARGKR*
Ga0126306_101189532	3300010166	Serpentine Soil	VSTFADGFSHPLALLVDRSGGVLVADWGPGVVYRIQARGRP*
Ga0134067_103124563	3300010321	Grasslands Soil	VPFASGFEHPLALLVDRRGGLLVADWGSGIVYRIQADGRR*
Ga0134128_106554573	3300010373	Terrestrial Soil	GKASTFARGFDHPLALVVDKTGALLVADWGRGVIYRIQSAGG*
Ga0126381_1037812461	3300010376	Tropical Forest Soil	KAETFATGFSHPLALAVGPAGDLLVADWSRGVIYAIRKT*
Ga0134124_118828502	3300010397	Terrestrial Soil	VTSFASGFAHPLALLAGRRGGLLVADWGRGVVYRIAPR*
Ga0134121_116146311	3300010401	Terrestrial Soil	SVFASGFAHPLALLPDRAGGLLVADWGRGIVYRIHGS*
Ga0124850_10848981	3300010863	Tropical Forest Soil	RRVTVFASGFAHPLALLVDRRGGLLVADWGPGIVYRIHAGS*
Ga0120146_10126682	3300011992	Permafrost	VSTFADGFAHPLALLVDRNGGLLVADWGPGVVYRIQASGRA*
Ga0120146_10307161	3300011992	Permafrost	ATGFDPPLALAVGPSGDLLVADWGRGTIYAIRKP*
Ga0137381_115736181	3300012207	Vadose Zone Soil	GFDHPLALAVDRRGALLVADWGRGVIYRIQSLGGA*
Ga0150985_1102258473	3300012212	Avena Fatua Rhizosphere	ATTFASGFSHPLALLVDRRGGLLVADWGRGVVYRISRR*
Ga0157318_10306261	3300012482	Arabidopsis Rhizosphere	VVRVDLRPNGTARRVTVFASGFAHPLALLVDRSGGLLVADWGP
Ga0157351_10158972	3300012501	Unplanted Soil	RGRRISSFASGFAHPLALLVDHDGGLLVADWGRGVVYRIQARGRR*
Ga0157347_10122172	3300012502	Arabidopsis Rhizosphere	RISSFASGFAHPLALLVDHDGGLLVADWGRGVVYRIQARGRR*
Ga0157289_102181151	3300012903	Soil	KKDETARRVTTFASGFAHPLALLVDRGGGLLVADWGRGLVYRIVPR*
Ga0157308_100298631	3300012910	Soil	KDGTARRVTTFASGFAHPLALLGDRSGGLLVADWGRGLVYRIVPR*
Ga0162653_1000887802	3300012937	Soil	NHAETLALRARRDGIASRVTSFASGFAHPLALLVDKRGGLLVADWGRGLVYRIQARGKP*
Ga0162650_1000032953	3300012939	Soil	VSIFASGFGHPLALLVDPGGGLLVADWGRGVVYRIQARGRS*
Ga0164302_107300361	3300012961	Soil	TSFASGFAHPLALLAYRAGGLLVADWGRGVVYRISRLAT*
Ga0134110_100473313	3300012975	Grasslands Soil	FAHPLALLVDRRGVLLVADWGRGVVYRIQAAGFR*
Ga0120123_10235601	3300013770	Permafrost	VSTFAEGFAHPLALLVDRNGGLLVADWGPGVVYRIQASGRA*
Ga0157380_113287711	3300014326	Switchgrass Rhizosphere	SGKASTFARGFDHPLALVVDKTGALLVADWGRGVIYRVRKR*
Ga0120170_10541262	3300014823	Permafrost	RSVSSFAGGFSHPLALAFDPEGALLVADWGRGTIYRIQARDKP*
Ga0157376_112791911	3300014969	Miscanthus Rhizosphere	LRPNGTARRVSVFASGFAHPLALLADQRGGLLVADWARGVVYRIS*
Ga0173478_101450141	3300015201	Soil	KFASGFDHPLALAVDRAGGLLVADWGRGVIYRIQSRGG*
Ga0132258_122447501	3300015371	Arabidopsis Rhizosphere	GFDHPLALVVDPKGGLLVADWGRGVIYRIQSRGG*
Ga0136617_101536881	3300017789	Polar Desert Sand	TTVFADGFEHPLALAVDRLGGLLVTDFGRGVIYRIQAAGRR
Ga0184638_12671941	3300018052	Groundwater Sediment	GFDHPLALAVDRLGGLLVGDWGRGLIYRIQAKGKP
Ga0184635_100814581	3300018072	Groundwater Sediment	ARGFDHPLALVVDPKGGLLVADWGRGVIYRIQSRGG
Ga0184609_101397181	3300018076	Groundwater Sediment	GRAAAVSTFATGFDHPIAVTVDRLGALLVADYGRGVIYRIQARGNG
Ga0184612_105063861	3300018078	Groundwater Sediment	TFASGFDHPLALAVDRLGGLLVGDWGRGLIYRIQAKGKP
Ga0184625_106078652	3300018081	Groundwater Sediment	GPAQVTTFATGFEHPLAVIVDPDGALLVADHGRGVVYRIVKTR
Ga0196964_104654731	3300020202	Soil	ARPFADGFEHPLAVAVDRQNALLVADWGRGVVYRIQRRGEP
Ga0222621_11210891	3300021510	Groundwater Sediment	SAFASGFGHPLALLVDPGGGLLVADWGRGVVYRIQARGHS
Ga0224712_100514282	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	TTFATGIDHPLALAVDPSGGLLVADWGRGAIYEIVRV
Ga0224452_12408721	3300022534	Groundwater Sediment	VTTFASGFAHPLALLVDRGGGLLVADRGRGVVYRIQA
Ga0222622_103731441	3300022756	Groundwater Sediment	AGVSTFATGFVHPIAVVADASGGLLVADYGRGVVYRITKK
Ga0222622_112388361	3300022756	Groundwater Sediment	SFASGFAHPLALLVDKRGGLLVADWGRGVVYRIQARGKP
Ga0247745_10512243	3300022898	Soil	GPPKRVTTFARGFDHPLALVVDKSGALLVADWGTGVIYRIQSAGG
Ga0207645_101308571	3300025907	Miscanthus Rhizosphere	TASRVTVFASGFAHPLALLADRGGGLLVADWGRGIVYRIQARATRRS
Ga0207646_112224592	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RRGRVTTFATGFDHPLALAVDPSGGLLVADWGRGVIYEIRKR
Ga0207650_102724253	3300025925	Switchgrass Rhizosphere	FARGFDHPIAVLADPAGGLLVADWGRGTIYRIRPPVS
Ga0207664_103075191	3300025929	Agricultural Soil	GRGCARRVVSFASGFEHPLALLIDRRGGLLVADWGSGIVYRMQADGHP
Ga0207686_103642361	3300025934	Miscanthus Rhizosphere	AQSRVSVFARGFDHPIAVLADPAGGLLVADWGRGTIYLIRAPVS
Ga0207669_101527231	3300025937	Miscanthus Rhizosphere	GFGHPLALLVDPGGGLLVADWGRGVVYRIQARGHS
Ga0207639_106652141	3300026041	Corn Rhizosphere	SRVTVFASGFAHPLALLADRGGGLLVADWGRGIVYRIQARATRRS
Ga0207678_105009731	3300026067	Corn Rhizosphere	NGTARKVSVFASGFAHPLALLPDRAGGLLVADWGRGIVYRIHGS
Ga0207702_115188641	3300026078	Corn Rhizosphere	GGHATTFATGFDHPLALAVGPSRDLLVADWGRGAIYSIAKRP
Ga0207547_1058562	3300026807	Soil	QPGPPKRVTTFARGFDHPLALVVDKSGALLVADWGTGVIYRIQSAGG
Ga0207428_100706491	3300027907	Populus Rhizosphere	VVLRPGRPAAVSTFATGFDHPIAVTVDQRGALLVADYGRGVVYRIQARGKR
Ga0207428_105271473	3300027907	Populus Rhizosphere	TSASGWSKPRRVTTFARGFDHPLALVVDKSGALLVADWGRGAIYGIQSTGR
Ga0247689_10418071	3300028281	Soil	LRPNGTARRVSVFASGFAHPLALLADQRGGLLVADWGRGAVYRIS
Ga0307291_11499142	3300028707	Soil	SFASGFAHPLALLVDRRGGLLVADWGRGVVYRIQADGHR
Ga0307295_100140421	3300028708	Soil	ASNVTTFASGFAHPLALLVDRGGGLLVADWGRGVVYRIQAASRG
Ga0307293_102722392	3300028711	Soil	SATTFASGFDHPLALAVDRLGGLLVGDWGRGVIYRIQAKGKP
Ga0307307_101903121	3300028718	Soil	DGTARRVSVFASGFAHPLALLVDHRGGLLVADWGRGTVYRIQARGRR
Ga0307301_101920152	3300028719	Soil	ARKAVTTFARGFDHPLALVVDPKGGLLVADWGRGVIYRIQSRGG
Ga0307318_101172412	3300028744	Soil	TTFARGFDHPLALVVDPNGGLLVADWGRGVIYRIQSRGG
Ga0307288_101703381	3300028778	Soil	AEGFAHPLALLVDRNGGLLVADWGRGVVYRIQARGRT
Ga0307288_104696622	3300028778	Soil	TTFASGFAHPLALLLDRKGGLLVADWGRGVVYRIQKP
Ga0307282_1000079214	3300028784	Soil	VTTFARGFDHPLALVVDPNGGLLVADWGRGVIYRIQSRGG
Ga0307290_103085491	3300028791	Soil	TARRVTVFASGFAHPLALLVDHRGGLLVADWGRGTVYRIQARGRL
Ga0307287_101506752	3300028796	Soil	TRFASGFDHPLALAVDRSGGLLVADWGRGVIYRIQSRGG
Ga0307284_101301162	3300028799	Soil	GVTTFARGFDHPLALVVDPNGGLLVADWGRGVIYRIQSRGG
Ga0307292_100701281	3300028811	Soil	ARVVSFASGFAHPLALLVDRRGGLLVADWGRGVVYRIQADGHR
Ga0307292_102059092	3300028811	Soil	VTTFADGFAHPLALLVDRDGGLLVADWGRGVVYRIQARGRT
Ga0307302_100653001	3300028814	Soil	AAGFDHPLALLIDPDGGLLVADWGRGVIYRIQARGKP
Ga0307296_103641342	3300028819	Soil	RRATVFASGFAHPLALLVDHRGGLLVADWGRGTVYRIQARGRL
Ga0307312_105614591	3300028828	Soil	LELRPDGTARRVTVFASGFAHPLALLVDHRGGLLVADWGRGTVYRIQARGRR
Ga0307314_100656872	3300028872	Soil	SFASGFAHPLALLAGLGGGLLVADWGRGVVFRITRN
Ga0307289_104445482	3300028875	Soil	ARRVSVFASGFAHPLALLVDHRGGLLVADWGRGIVYRIQARGRP
Ga0307286_103088341	3300028876	Soil	SGKTSTFARGFDHPLALVVDKTGALLVADWGTGVIYRIQSGG
Ga0307278_100957943	3300028878	Soil	TARRVSVFASGFAHPLALLVDHRGGLLAADWGRGTVYRIQARGRL
Ga0307277_103562071	3300028881	Soil	DGFAHPLAVLVDRNGGLLVADWGPGVVYRIQARGRP
Ga0247826_109737583	3300030336	Soil	RVTVFASGFAHPLALLADRGGGLLVADWGRGIVYRIQARATRRS
Ga0306918_108373222	3300031744	Soil	KADTFATGFSHPLALAVGPAGDLLVADWSRGVIYAIRKG
Ga0308175_1022358451	3300031938	Soil	VATTFATGFDHPLALTVGPSGDLLVADWGRGAIYAIRRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089945

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences