3300000564: Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B

Overview

Basic Information

• IMG/M Taxon OID: 3300000564
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0051396 | Gp0054426 | Ga0026729
• Sample Name: Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66568642
• Sequencing Scaffolds: 48
• Novel Protein Genes: 52
• Associated Families: 50

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	7
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11
All Organisms → cellular organisms → Bacteria	14
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → prairie → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000402	Metagenome / Metatranscriptome	1180	Y
F000517	Metagenome / Metatranscriptome	1061	Y
F000569	Metagenome / Metatranscriptome	1018	Y
F000877	Metagenome / Metatranscriptome	851	Y
F001831	Metagenome / Metatranscriptome	628	Y
F002477	Metagenome / Metatranscriptome	555	Y
F002646	Metagenome	540	Y
F003870	Metagenome / Metatranscriptome	464	Y
F004382	Metagenome	440	Y
F007257	Metagenome	354	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
RepKanNP_BrdU_F12BDRAFT_1000814	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1953
RepKanNP_BrdU_F12BDRAFT_1000956	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1759
RepKanNP_BrdU_F12BDRAFT_1001082	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1644
RepKanNP_BrdU_F12BDRAFT_1001451	All Organisms → cellular organisms → Bacteria	1417
RepKanNP_BrdU_F12BDRAFT_1001566	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1365
RepKanNP_BrdU_F12BDRAFT_1001658	All Organisms → cellular organisms → Bacteria	1328
RepKanNP_BrdU_F12BDRAFT_1002032	All Organisms → cellular organisms → Bacteria → Proteobacteria	1217
RepKanNP_BrdU_F12BDRAFT_1002140	All Organisms → cellular organisms → Bacteria	1189
RepKanNP_BrdU_F12BDRAFT_1002681	All Organisms → cellular organisms → Bacteria	1075
RepKanNP_BrdU_F12BDRAFT_1002960	Not Available	1033

Sequences

Scaffold ID	Protein ID	Family	Sequence
RepKanNP_BrdU_F12BDRAFT_1000814	RepKanNP_BrdU_F12BDRAFT_10008141	F084031	VARFVLARLVQSLVALAILSVVVFVLARATGDPLHLILPMSASEE
RepKanNP_BrdU_F12BDRAFT_1000956	RepKanNP_BrdU_F12BDRAFT_10009562	F000517	MPLILLLAVVLALSPLDGVAGEKDIADVKELAGSWRGWVTREEGQEGATMIVSSDGSYRALTTAGASTEGKFYLQDGQLRYRSSRTTGAASLSEDQGTTRLTMMPADPKYHTGRAEYERVKQ*
RepKanNP_BrdU_F12BDRAFT_1001082	RepKanNP_BrdU_F12BDRAFT_10010821	F099517	YESAMKEFSEMARQNNATLQNLRTAEIRRRDYYFSKLERDIREKLVREEWEFKG*
RepKanNP_BrdU_F12BDRAFT_1001451	RepKanNP_BrdU_F12BDRAFT_10014511	F070484	MGRIVYAAAMSHVLYPDYYGQNVGPHGRRMVEELIGVVRAMGQTLTAAAPDALVVVADDHLNVFSFDAVPALCVRVGRSVSRMVQADAIEFDRALEGLPERYPVHEDLANS
RepKanNP_BrdU_F12BDRAFT_1001566	RepKanNP_BrdU_F12BDRAFT_10015661	F013365	MLKCIGLTALATAVAVLTLGCVRGSVSPTAPLQDQIYMAKPMSAPAEIISREATVLWRDIGIYRVSGPLRMAGPMYAVTSYETKAECDAAQQAAMANEALSRMGPTTEQMSDGIKTWDSDRLHYTTFRYLCRLA
RepKanNP_BrdU_F12BDRAFT_1001658	RepKanNP_BrdU_F12BDRAFT_10016583	F042413	VLGITLAVIAALSQAATAWMGIQLSRKGGRRVPLTIAFLALAVTGIGATAWIAARNRSHDAAALAPKVNKDSAPREPRASIRNTTREVTTMGANQLVQVNIGFENSGARPATEVRRVQMVNFIQSPYGEEEAFRLLRAELQSTAGEAVSVAPAERLAFTIEGPRLLASDFAPRGSDDPQVIRDGRPLLVAGIIQYRADDRSEATAEYCFYAMNPKVLVACSGHNN*
RepKanNP_BrdU_F12BDRAFT_1002032	RepKanNP_BrdU_F12BDRAFT_10020322	F001831	MLKATVVGSCRFALFLGACAITNTPQQELAYARWAKCSAPYVSLERVDLDGRITFKISNEGSRQQVLQCLAEAGRTGPPLPEPVGVYPPSGP*
RepKanNP_BrdU_F12BDRAFT_1002140	RepKanNP_BrdU_F12BDRAFT_10021401	F016508	MNAETEAAIQNLSKTFADTADTMKQIANALINIEHTMKQIANALINIELHLQAMRPSNVQTIRGPR*
RepKanNP_BrdU_F12BDRAFT_1002681	RepKanNP_BrdU_F12BDRAFT_10026812	F014514	MTLQADLVLHHRPHGTLTGDATEPAWNGYLLAVACPC*
RepKanNP_BrdU_F12BDRAFT_1002960	RepKanNP_BrdU_F12BDRAFT_10029602	F068242	MKLRDVTRVDGGSVTHVWPPQLLVQIGPMIVQPGEGVLKSVKRFGNRLSLTVEHEGQEAWGGIEVEQDQRPSMNAVERALKASVGKAITEIGDLEVG*
RepKanNP_BrdU_F12BDRAFT_1002980	RepKanNP_BrdU_F12BDRAFT_10029802	F042788	MNMRPLIAGFVVAEIVLNATSLVGQTLDIKPPTTGPEIRPDHDQRRKEKSSVARPGLNEPHFISPFSVKTDAGQLGIAGWTSTNPNVPPGHSLSGDGAGSLGFGVAAEWGARPRSERALIR*
RepKanNP_BrdU_F12BDRAFT_1003445	RepKanNP_BrdU_F12BDRAFT_10034452	F002646	VRQRNRATRNRDIALTTLIDLLVQVIFVFTLILISANAIEGDPQERGWVTPDAWKTLISIFDIDPQNIRGAEAQLSAIKGKYEKLNTDLVACDAKTGACDKQAGRGPGNSPCRNSAGVEMVVAEATIDQRGRITVALGRHARDLQDRQPVSGRAIGIPLSVDEFGSSFRSWREQGLARHPPCAFKVDVRYDPRAPAGNYEPARRAIASFFTLSTPPQRF*
RepKanNP_BrdU_F12BDRAFT_1003864	RepKanNP_BrdU_F12BDRAFT_10038641	F009828	MDFDFTDAERAFAEEVRGFLRANPPETFAIDGMDAGYGS
RepKanNP_BrdU_F12BDRAFT_1003872	RepKanNP_BrdU_F12BDRAFT_10038721	F000402	MEEHGDCTSGVCPGASANGETVSLYVPYNHPLLQLKRALPWEALAEVMTRHWRQAGKNVDGHPGLTWDVALYVPLMVLMVVKNLHARALEAYVAENVVARVFIGRQNAPRPQIRDHSNIARAYAALGKDGVEEVNALILHVAKDLGFADISILSSDTTAQELPIGYPNEPGILRGLAQRCGRALAKLTTRGAWGVDAALAQVQTILRSVKEHHLFAKGKQAKRQVLIRLLTEVGQLLV
RepKanNP_BrdU_F12BDRAFT_1004962	RepKanNP_BrdU_F12BDRAFT_10049621	F061631	EPVSRLCMAITGRAHVDKQGRRIGTLEPGHIVGTTLALTGAPSPVDATFSEPARYMSWPLSSLRTFMDKRPELRVTLQGLVSRDLAGKLERLLS*
RepKanNP_BrdU_F12BDRAFT_1005103	RepKanNP_BrdU_F12BDRAFT_10051031	F069466	DATPGAAQWSEMGRWLDGSQAFTLDVESSRFRVSNLGARPVISVDDAYPGNPPYRIIDTDLRGSGVSLDLKLRWPTAASTGTSGFGALEPYLSFGPMLVAAGSDGARVSQSGAMSLGLSMGAGLSWRFARNAELFGGYRFMQYGRDSMFSRGDRSSSDPEGIGHDVLYGISVRF*
RepKanNP_BrdU_F12BDRAFT_1005993	RepKanNP_BrdU_F12BDRAFT_10059932	F051171	MLKRKVIVAAAIGCVLGVGTLASSQDKKPPTATRAGLHKIYAAGKALEEAHRHLERAEHNFGGHRAKALELVKQAEAEVKEAVAFAKATPPAAPPAAKQ*
RepKanNP_BrdU_F12BDRAFT_1005997	RepKanNP_BrdU_F12BDRAFT_10059971	F019970	MMMEQCGIGMMLVGTLAAGLGLGLLASLIVLVWVVIGRLR
RepKanNP_BrdU_F12BDRAFT_1006232	RepKanNP_BrdU_F12BDRAFT_10062322	F105944	MAAGAGFEGKMKSMKCRLILILCPLAVSSAGMGPVSAEQPRFSTVAPGIAHAIFEVRPADAEPFSGHAFKIDLGVAELRLVPAGEPSARRTVEQIVAPYPLVVAVNASFFDKEGRAMGLAVDEGRVMA*
RepKanNP_BrdU_F12BDRAFT_1006527	RepKanNP_BrdU_F12BDRAFT_10065271	F000877	MDRGTAMLAVVLDVYEGGKDLIPGWKLKEHAESALAAGGVEGLRRYYEGCLSGSDHRLKTTLEGDRRKTLESERARFMAMYLGPARR*
RepKanNP_BrdU_F12BDRAFT_1006852	RepKanNP_BrdU_F12BDRAFT_10068522	F004382	MDHAVGASHASPVEWLLVLAAAIVLVWSLALAIRYTIHPRETEVAHIKRRILDEIDEPEEAPRR*
RepKanNP_BrdU_F12BDRAFT_1006894	RepKanNP_BrdU_F12BDRAFT_10068941	F025675	VPGACASLLEAMVRSGFRLGDPALFMASRLFGRPELXLPSGPILY*
RepKanNP_BrdU_F12BDRAFT_1007022	RepKanNP_BrdU_F12BDRAFT_10070222	F106129	MRGPRGRFLRGAALISALAMLTGCVVVRSLRGEKGPDFSSIQPGAKRSVVETALGSPLQEWVSPTNIRCALHEYNAGIPSHPGDAGTAALLDVVTFGIFEIITYKNNGWRHPGEYDRRRPKVVITYDPRDVILGIFDEGAELPPDGRSGPYRWPRVSSLDRDSPFA*
RepKanNP_BrdU_F12BDRAFT_1007251	RepKanNP_BrdU_F12BDRAFT_10072511	F041748	TQIRACEYEGAVRSLHQAIWDVEQIEDEPLRVEELAEVHQALAEAYRGLKKNQWSGEQRALAQALVEYGRRENDSGSPEAAMAKARTAYQAAQFREAVTGFGQALVELEGLAPTPVRLRSLVDARCHLMLAYFALGRSERAGEEVRRLAALDGATALCARQAPPPVRTLIRSVETSEARFRRD*
RepKanNP_BrdU_F12BDRAFT_1007384	RepKanNP_BrdU_F12BDRAFT_10073842	F073220	NGVCTDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNKFASSVSITSA*
RepKanNP_BrdU_F12BDRAFT_1007766	RepKanNP_BrdU_F12BDRAFT_10077662	F011414	VLDRRGVTLFDAIYAFFQHHRCGDLDSGVEGDRVWMTCTCGAVICRPLEPAA*
RepKanNP_BrdU_F12BDRAFT_1009115	RepKanNP_BrdU_F12BDRAFT_10091152	F068242	MKLRDVTRVDGGAVTHVWPPQLLVQIGPMIVQPGEGVLKSVKRFRSRLSLTVEHEGQEAWGGIEVEQDQRPSVDAVERALKASVGKAIEEIGDLDVS*
RepKanNP_BrdU_F12BDRAFT_1009195	RepKanNP_BrdU_F12BDRAFT_10091951	F031617	MREADRRREIETYYLGISPDEISSHVAASFDLWDSLARYRRELAIGARWLELGGGMGDLAAEAIDHGYDVLMTDVQDALLETAARRHPRLSGRLQR
RepKanNP_BrdU_F12BDRAFT_1009277	RepKanNP_BrdU_F12BDRAFT_10092771	F052083	NTMRTDCLAQAQQAVTLQRTASAGGRFSDAEAYGQILKDKMACADKANQDLVRLQTQAGPGKAALFVSEDRFHQEYRQGLQAQLGALQRLSGGLVGHDSVTYEMFAQQMDALRRQTDTFKNRYIRLLKEPDTQDLAKAVFQASDLLVASAQAWKTQVKAEVDITELAPKGPSAQLARAEAVRDTARTQRVGQWEAAQQLISQAATLAATR*
RepKanNP_BrdU_F12BDRAFT_1009885	RepKanNP_BrdU_F12BDRAFT_10098851	F008113	MSRLVLAFALTVMCAVAACTPSPNPRVNTSGGPRVIFEDELKSPINWPAALGTICKSSYSDGGYVVENIGNSAPCLLGPARPASFPASVRIEVSARQRKGTREGAFGLMFASQGTATDRTFATLGLTANGTYRVASWNGKWVYPVPPTATRSVKTDYGALNTLAVELRDRSIVAYVNGRPVATAELGAE
RepKanNP_BrdU_F12BDRAFT_1009904	RepKanNP_BrdU_F12BDRAFT_10099042	F019576	QRVLLGQGPLVKWLFPKVLPLFLGSPLLPLIQRRIFFGAPLPPLDPAFSFREAAGRV*
RepKanNP_BrdU_F12BDRAFT_1010671	RepKanNP_BrdU_F12BDRAFT_10106712	F070280	LSGMLEAMSPVSLTLTRRGTRAAANSIKGRVHVVDVAKGREYNTFGNVAQAPGHGMHAELRYSLAFTEDGDWLFAPDTHDRGLRLIHVPSGKIFPVLQGDGPFYKAVALAVPASMVAFLRPGSVEGFGPYAIEVWRLEYQARPH*
RepKanNP_BrdU_F12BDRAFT_1011514	RepKanNP_BrdU_F12BDRAFT_10115142	F001831	GGCATLANTPQQDLAYDRWAKCKSPFTLLEWVEVDGRITFRYNSASGQQEVLQCLAQANRSGPALPEPVGVRPPNGV*
RepKanNP_BrdU_F12BDRAFT_1011539	RepKanNP_BrdU_F12BDRAFT_10115392	F035830	MKTVLKLVIAVALLNAVVRGADSLWNYYQLKDAAERALLFGSQRTSQQVHQQIMERALELDVPLKPEDLSVRWTTGRRVAAAAYTQPVEFFPKYPYPIEFSFNVNTV
RepKanNP_BrdU_F12BDRAFT_1011965	RepKanNP_BrdU_F12BDRAFT_10119652	F007257	VRKLLTLLAVVAATGAVAGSAATADEAPISGTVTSIDAAGKTLTLETVAKGKTRDVAIVLKPESKIVRFVRPTDPGKAGFVEQVLSLSDIKPGWIVSVTTTHEGDKEIADVVKVVLER*
RepKanNP_BrdU_F12BDRAFT_1012024	RepKanNP_BrdU_F12BDRAFT_10120242	F012497	EAAMSLVAHLLSPEETVKVMNDSHGQFSPVLDKARAATRDYFNKNDNYRNFGRAAEWFVATGWPGPVTAAAAEVQASNVLTDAPAKVIVDKWSVDQAIDWADKKIKETYDSLGA*
RepKanNP_BrdU_F12BDRAFT_1013430	RepKanNP_BrdU_F12BDRAFT_10134302	F000569	QQRPSMDLHIKKVWLPGAASCLLFFGFYYVLIWLPFDKNRFQFMAIPYLVLPFAGALAAYWSRRMKGSVLQRILSALFPVFAFVALFAVRIVYGLFFEGQPYTLPHFLAGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQLP*
RepKanNP_BrdU_F12BDRAFT_1013470	RepKanNP_BrdU_F12BDRAFT_10134701	F059321	CRIAGLARPELLVEVEVAAVRGARNGIEWIGPDAVDPLDRA*
RepKanNP_BrdU_F12BDRAFT_1013527	RepKanNP_BrdU_F12BDRAFT_10135272	F010452	DRAVGNGGFMAITFTVDSTTGEGTFIRVLRDGRPLGKILDAVGLYRFYEGDHERLGGSAELQDADLGRLKTAIQSRYEGRGR*
RepKanNP_BrdU_F12BDRAFT_1014000	RepKanNP_BrdU_F12BDRAFT_10140001	F015670	ATATSSKGQNLNFALPVNLLRDLPPVAISFAALKPAVLELREGTRLKDLVYFNNIIEQFGLFAEGTTLASLTASLQNRTTETISDVKVLVVIRNPRGEVLDFHLRDFKGTTIPPGLAKQVSIPISTRGFRTWGLGADYLNGTYEIRLLDYRIVGAGVGSAEDPFKRP*
RepKanNP_BrdU_F12BDRAFT_1014239	RepKanNP_BrdU_F12BDRAFT_10142392	F003870	SRVEPHVLPGQIWATEEFRQVLVERPSLWRTTELTTPDGGDRFNVKKEGRSEPDLWVRLYRLEF*
RepKanNP_BrdU_F12BDRAFT_1014587	RepKanNP_BrdU_F12BDRAFT_10145871	F002477	FANRVPEGNPSDPSYVLPLLDKVQSAIDRVRVPQRLRIHSVAGDLGVNETALRQALHARGILTVGIPQSVEPLNPTPTPEEIGAILTEAGLRRQRTPHQVQLACACGYSRPVVESHIASLLARGAGQVRYKGLQGAVIQQGMTVLAHNGATLVRIRQQQLSKRAQKFRRLLGLRHRKTKEIND
RepKanNP_BrdU_F12BDRAFT_1014887	RepKanNP_BrdU_F12BDRAFT_10148872	F086874	MDSPRVFFELAEITDRXRCIALSVSQRICVRLRHAERMASSQFDAAAFRLSGRGVF*
RepKanNP_BrdU_F12BDRAFT_1014973	RepKanNP_BrdU_F12BDRAFT_10149731	F041104	MEKATESLLRELEASPTDLKKLVVSAVWRHCNAIAIESEAISRWERDDPEHWASVQEWLLARGITITVLRSRPATEIPRAAPSLPGQPPAGAQG*
RepKanNP_BrdU_F12BDRAFT_1015135	RepKanNP_BrdU_F12BDRAFT_10151352	F027479	TGIAALAQDVQGIMRKAAGSGAVFRTAVLRSGQTHLVIQPEEVAHGRSIVVVAGGEVSRPGLAYRQFERVTAALAQA*
RepKanNP_BrdU_F12BDRAFT_1016075	RepKanNP_BrdU_F12BDRAFT_10160752	F021741	EAMKAALQGIDQVMIDATERAYRRSQDDAKQREHYSGKKNDIR*
RepKanNP_BrdU_F12BDRAFT_1017130	RepKanNP_BrdU_F12BDRAFT_10171302	F011570	METSKRVRRGVTVAFWWFMIVSQHPGGTLTAATQGPFATQAQCDWARQQIGVTTGLRGGQGVG
RepKanNP_BrdU_F12BDRAFT_1017210	RepKanNP_BrdU_F12BDRAFT_10172101	F047166	AGLSARRMIARALLWMRRVGILLGVALHLSSIIVHADVPTVADMTACNQEAREESRDRSASPTSKDQADAETARRQRTGTAAISGAAGTVTQSEDPQIHGMDAHGATDAAYRAAYRVCMRKRGF*
RepKanNP_BrdU_F12BDRAFT_1017880	RepKanNP_BrdU_F12BDRAFT_10178801	F041503	RAPGTRGADTDEPVAGMTRRNLVGLFVAVAVGAMSIAPALAGEAGIAPHAYYLFLAGAPQSCEDCYVPLLITPRPLEDVSSSGRDGAVLITTYERDSIWKVERGVSLAAADVSAAERVVRLRGRRYRYQAVTPAEVLRLLEKPEGTIPIHRTAPIPDKRSLEDLAGAFR
RepKanNP_BrdU_F12BDRAFT_1018023	RepKanNP_BrdU_F12BDRAFT_10180231	F057717	KVRKAFAPYHVVAELQDYHRKLGFRVYDKDDEIVGTFEDSLIQDLKNPANLKRMILATRAVIERRSKKLKPWKFEA*
RepKanNP_BrdU_F12BDRAFT_1018281	RepKanNP_BrdU_F12BDRAFT_10182812	F044163	MRILVLSPRLTESRRATFRSLAEGLGELHFSGVGEPAPEVGESDAIIVDGPQPARPLAFLGA
RepKanNP_BrdU_F12BDRAFT_1018612	RepKanNP_BrdU_F12BDRAFT_10186122	F084752	MVTATAETHLSFSVDDAWTALGRRTTYLYFPGVTAGNRTPRGALHHALDLPIVDRQEQTATLTVSRAGKGGRR