Metagenome / Metatranscriptome Family F086874

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086874
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	56 residues
Representative Sequence	MDSPRFFFQSAEIVDRLRCIALSVSERVCVRLRHAERMASAQFDAAAFRLSGRGVF
Number of Associated Samples	78
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.73 %
% of genes near scaffold ends (potentially truncated)	26.36 %
% of genes from short scaffolds (< 2000 bps)	78.18 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (21.818 % of family members)
Environment Ontology (ENVO)	Unclassified (42.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.182 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.95% β-sheet: 0.00% Coil/Unstructured: 44.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04392	ABC_sub_bind	11.82
PF08450	SGL	2.73
PF05494	MlaC	2.73
PF10017	Methyltransf_33	2.73
PF04909	Amidohydro_2	1.82
PF00226	DnaJ	0.91
PF01926	MMR_HSR1	0.91
PF02347	GDC-P	0.91
PF00383	dCMP_cyt_deam_1	0.91
PF00589	Phage_integrase	0.91
PF00211	Guanylate_cyc	0.91
PF01370	Epimerase	0.91
PF01717	Meth_synt_2	0.91
PF00296	Bac_luciferase	0.91
PF00072	Response_reg	0.91
PF09851	SHOCT	0.91
PF13551	HTH_29	0.91
PF01297	ZnuA	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	11.82
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	2.73
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	2.73
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	2.73
COG0403	Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain	Amino acid transport and metabolism [E]	0.91
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.91
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	0.91
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.91
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.00 %
Unclassified	root	N/A	20.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.00 %
Unclassified	root	N/A	20.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.00 %
Unclassified	root	N/A	20.00 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	51.82 %
Unclassified	root	N/A	20.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	51.82 %
Unclassified	root	N/A	20.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	51.82 %
Unclassified	root	N/A	20.00 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	49.09 %
Unclassified	root	N/A	20.00 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	49.09 %
Unclassified	root	N/A	20.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10807837	Not Available	1116	Open in IMG/M
3300000564\|RepKanNP_BrdU_F12BDRAFT_1014887	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300000955\|JGI1027J12803_107068680	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	531	Open in IMG/M
3300000956\|JGI10216J12902_108300070	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	738	Open in IMG/M
3300002562\|JGI25382J37095_10248003	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300004267\|Ga0066396_10096583	Not Available	541	Open in IMG/M
3300005174\|Ga0066680_10118023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1638	Open in IMG/M
3300005174\|Ga0066680_10438193	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300005180\|Ga0066685_10679250	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	707	Open in IMG/M
3300005332\|Ga0066388_100065850	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3890	Open in IMG/M
3300005332\|Ga0066388_100290997	All Organisms → cellular organisms → Bacteria	2277	Open in IMG/M
3300005332\|Ga0066388_100716358	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1605	Open in IMG/M
3300005332\|Ga0066388_108640554	Not Available	506	Open in IMG/M
3300005332\|Ga0066388_108724111	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300005446\|Ga0066686_10007119	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5532	Open in IMG/M
3300005471\|Ga0070698_100449860	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1224	Open in IMG/M
3300005568\|Ga0066703_10563882	Not Available	668	Open in IMG/M
3300005586\|Ga0066691_10534071	Not Available	700	Open in IMG/M
3300005713\|Ga0066905_100037538	All Organisms → cellular organisms → Bacteria	2833	Open in IMG/M
3300005713\|Ga0066905_100239722	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1385	Open in IMG/M
3300005713\|Ga0066905_100572968	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	951	Open in IMG/M
3300005764\|Ga0066903_100162968	All Organisms → cellular organisms → Bacteria	3238	Open in IMG/M
3300005764\|Ga0066903_100275332	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2631	Open in IMG/M
3300006058\|Ga0075432_10023097	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2130	Open in IMG/M
3300006796\|Ga0066665_11533626	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	521	Open in IMG/M
3300006847\|Ga0075431_101553259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	620	Open in IMG/M
3300006852\|Ga0075433_11171491	Not Available	667	Open in IMG/M
3300006854\|Ga0075425_100208523	All Organisms → cellular organisms → Bacteria	2246	Open in IMG/M
3300006854\|Ga0075425_100501078	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1398	Open in IMG/M
3300006854\|Ga0075425_101473242	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	769	Open in IMG/M
3300006871\|Ga0075434_100006961	All Organisms → cellular organisms → Bacteria	10421	Open in IMG/M
3300006871\|Ga0075434_100098858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2923	Open in IMG/M
3300006903\|Ga0075426_10826280	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300007076\|Ga0075435_100550132	Not Available	999	Open in IMG/M
3300007255\|Ga0099791_10006560	All Organisms → cellular organisms → Bacteria	4795	Open in IMG/M
3300009012\|Ga0066710_100310342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2315	Open in IMG/M
3300009094\|Ga0111539_13251660	Not Available	523	Open in IMG/M
3300009100\|Ga0075418_12797267	Not Available	533	Open in IMG/M
3300009137\|Ga0066709_100405372	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1893	Open in IMG/M
3300009147\|Ga0114129_10371437	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1890	Open in IMG/M
3300009147\|Ga0114129_11976338	Not Available	706	Open in IMG/M
3300009162\|Ga0075423_10984257	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	896	Open in IMG/M
3300009162\|Ga0075423_11910401	Not Available	641	Open in IMG/M
3300009792\|Ga0126374_11038761	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300010043\|Ga0126380_10267654	Not Available	1194	Open in IMG/M
3300010043\|Ga0126380_10315397	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1120	Open in IMG/M
3300010043\|Ga0126380_11800649	Not Available	554	Open in IMG/M
3300010046\|Ga0126384_10098774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2148	Open in IMG/M
3300010046\|Ga0126384_11093297	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	731	Open in IMG/M
3300010046\|Ga0126384_11372198	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300010046\|Ga0126384_11614772	Not Available	611	Open in IMG/M
3300010047\|Ga0126382_11427217	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	633	Open in IMG/M
3300010140\|Ga0127456_1006401	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	708	Open in IMG/M
3300010336\|Ga0134071_10140890	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300010358\|Ga0126370_10083520	All Organisms → cellular organisms → Bacteria	2155	Open in IMG/M
3300010359\|Ga0126376_10230100	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1561	Open in IMG/M
3300010359\|Ga0126376_12482710	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	566	Open in IMG/M
3300010360\|Ga0126372_10287386	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1436	Open in IMG/M
3300010361\|Ga0126378_11614889	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	736	Open in IMG/M
3300010362\|Ga0126377_10156761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2144	Open in IMG/M
3300010362\|Ga0126377_10168389	All Organisms → cellular organisms → Bacteria	2074	Open in IMG/M
3300010362\|Ga0126377_10627498	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1121	Open in IMG/M
3300010366\|Ga0126379_10421993	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1388	Open in IMG/M
3300010366\|Ga0126379_13672231	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300010376\|Ga0126381_102016384	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	831	Open in IMG/M
3300010376\|Ga0126381_104710246	Not Available	525	Open in IMG/M
3300010398\|Ga0126383_11051826	Not Available	903	Open in IMG/M
3300010398\|Ga0126383_11362416	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	799	Open in IMG/M
3300011269\|Ga0137392_11605535	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300012189\|Ga0137388_10913401	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	812	Open in IMG/M
3300012202\|Ga0137363_10260047	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300012204\|Ga0137374_10014768	All Organisms → cellular organisms → Bacteria	9028	Open in IMG/M
3300012204\|Ga0137374_10439122	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1027	Open in IMG/M
3300012349\|Ga0137387_10735959	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	713	Open in IMG/M
3300012353\|Ga0137367_10407204	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	964	Open in IMG/M
3300012355\|Ga0137369_10013622	All Organisms → cellular organisms → Bacteria	7905	Open in IMG/M
3300012361\|Ga0137360_10007955	All Organisms → cellular organisms → Bacteria → Proteobacteria	6625	Open in IMG/M
3300012401\|Ga0134055_1289552	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	567	Open in IMG/M
3300012406\|Ga0134053_1425483	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M
3300012532\|Ga0137373_10555476	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	871	Open in IMG/M
3300012917\|Ga0137395_10658818	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	757	Open in IMG/M
3300012930\|Ga0137407_11714977	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300012930\|Ga0137407_12332051	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300012948\|Ga0126375_10923598	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300012972\|Ga0134077_10073972	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1289	Open in IMG/M
3300017656\|Ga0134112_10475392	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300017659\|Ga0134083_10241572	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	754	Open in IMG/M
3300018063\|Ga0184637_10006077	All Organisms → cellular organisms → Bacteria	7349	Open in IMG/M
3300025922\|Ga0207646_10679262	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	922	Open in IMG/M
3300026328\|Ga0209802_1022980	All Organisms → cellular organisms → Bacteria	3393	Open in IMG/M
3300026328\|Ga0209802_1122602	Not Available	1139	Open in IMG/M
3300026524\|Ga0209690_1113165	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1085	Open in IMG/M
3300026529\|Ga0209806_1199827	Not Available	698	Open in IMG/M
3300026537\|Ga0209157_1015862	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4831	Open in IMG/M
3300027527\|Ga0209684_1075200	Not Available	527	Open in IMG/M
3300027646\|Ga0209466_1112723	Not Available	552	Open in IMG/M
3300027655\|Ga0209388_1053823	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300027873\|Ga0209814_10330588	Not Available	665	Open in IMG/M
3300031170\|Ga0307498_10113815	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300031720\|Ga0307469_10057741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2486	Open in IMG/M
3300031720\|Ga0307469_10328654	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300031720\|Ga0307469_10514403	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1052	Open in IMG/M
3300031720\|Ga0307469_10688759	Not Available	925	Open in IMG/M
3300031740\|Ga0307468_100288386	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1183	Open in IMG/M
3300031820\|Ga0307473_10559857	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300032001\|Ga0306922_10499378	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1297	Open in IMG/M
3300032180\|Ga0307471_100158509	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300032180\|Ga0307471_100518509	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1342	Open in IMG/M
3300032180\|Ga0307471_102282920	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300032205\|Ga0307472_100994697	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	785	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.55%
Host-Associated	Host-Associated	15.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.64%
Plants	Host-Associated → Plants	15.45%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.45%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.18%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.09%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000564	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_108078374	3300000550	Soil	MDSPRVFFASAEIADRLRCIALSISQRTCARLAHAERMASQFDAAAFRLSGRGVF*
RepKanNP_BrdU_F12BDRAFT_10148872	3300000564	Soil	MDSPRVFFELAEITDRXRCIALSVSQRICVRLRHAERMASSQFDAAAFRLSGRGVF*
JGI1027J12803_1070686801	3300000955	Soil	MDSPRFFFQSAAIVDRLRCIALSVSERVCVRRRHVERMASAQFDAAAFRLSGRGVF*
JGI10216J12902_1083000702	3300000956	Soil	MDSPHVFFQLAEITDRLRCIALSVSQRTCVRLRHAEHLASAQFDAAAFRLSGRGVF*
JGI25382J37095_102480031	3300002562	Grasslands Soil	MDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFDAAAF
Ga0066396_100965832	3300004267	Tropical Forest Soil	MDSPVVFFELADIADRLRCIALSISRRASVWRRRAERVASARFDAVPFRLAGRGVF*
Ga0066680_101180232	3300005174	Soil	MHSPRFFFQSAEIVDRLRCIALSMSRRVCVRLHHAERMASAQFDVAAFRLSGRGVF*
Ga0066680_104381932	3300005174	Soil	MESLDIFFESAAIADRLRCIAISISQRACVQLRHAERMASQFDAAAFRLSGRGVF*
Ga0066685_106792501	3300005180	Soil	MESLDIFFESAAIADRLRCIAISISQRACVQLRHAERMASQFDAAA
Ga0066388_1000658506	3300005332	Tropical Forest Soil	MDSPVVFFELAEIADRLRCIALSISQRASVRLRRAERMASAQFDAGPFRLYGRGVF*
Ga0066388_1002909975	3300005332	Tropical Forest Soil	MDSPRGFFQSAEIAAHLRCIALSMSQRISVQLLHAERMASAQFAAAAFRLSGRGVF*
Ga0066388_1007163583	3300005332	Tropical Forest Soil	MDAQRVFFQSAEIADSLRCIARSMSQRTCVRLLHAERMGSAQFAAAAFRLSGRGVF*
Ga0066388_1086405541	3300005332	Tropical Forest Soil	MDAERVFFQSAEIADRLRCIALSMSQRTCVRLLHAERLGSAQFAAAAFRLSGRGVF*
Ga0066388_1087241111	3300005332	Tropical Forest Soil	MDSPFVFFELAEIADRLRCIALSISQRASVRLRHGERMASAQFDAVPFRLSGRGVF*
Ga0066686_100071196	3300005446	Soil	MDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFNAAAFRLPGRGVF*
Ga0070698_1004498602	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MESLRVFFESADIANRLRCIAISISQRACVRLRHAERMASQFDAAAFRLSGRGVF*
Ga0066703_105638821	3300005568	Soil	SPRFFFQSAEIVDRLRCIALSMSRRVCVRLHHAERMASAQFDVAAFRLSGRGVF*
Ga0066691_105340711	3300005586	Soil	DVRQGQRQMHSPRFFFQSAEIVDRLRCIALSMSRRVCVRLHHAERMASAQFDVAAFRLSGRGVF*
Ga0066905_1000375386	3300005713	Tropical Forest Soil	MDAQRVFFQSAEIADRLRCIALSMSQRTCVRLLHAERMGSAQFAAAAFRLSGRGVF*
Ga0066905_1002397222	3300005713	Tropical Forest Soil	MDSQRAFFQSAEIVDTLRRIALSVSQRTCVRLLHAERMASAQFSAAAFRLSGRGVF*
Ga0066905_1005729682	3300005713	Tropical Forest Soil	MDSPVVFFESAEIADRLRCIALSIGQRASIRLRHAERMASAQFDAVPFRLSGRGVF*
Ga0066903_1001629681	3300005764	Tropical Forest Soil	MDAQRVFFQSAEIADSLRCIALSMSQRTCVRLLHAERMGSAQFAAAAFRLSGRGVF*
Ga0066903_1002753324	3300005764	Tropical Forest Soil	MDSPVVLFELAEIADRLRCIALSISQSASARLRRAERMASAQFDAVPFRLSGRGVF*
Ga0075432_100230975	3300006058	Populus Rhizosphere	MDSARVFFASAEIADRLRCIALSISQRTCARLAHAERMASQFDAAAFRLSGRGVF*
Ga0066665_115336262	3300006796	Soil	GIFFESAAIADRLRCIAISISQRACVQLRHAERMASQFDAAAFRLSGRGVF*
Ga0075431_1015532592	3300006847	Populus Rhizosphere	MDSQRFFFQSAEIVDRLRCIALSVSERVCLRLRHVERMASAQFDAAAFRLSGRGVF*
Ga0075433_111714913	3300006852	Populus Rhizosphere	SAEIADRLRCIALSMSQRTCARLAHAECMASAQFATAAFRLSGRGVF*
Ga0075425_1002085231	3300006854	Populus Rhizosphere	MDSPRVFFASAEIADRLRCIALSMSQRTCARLAHAECMASAQFATAAFRLSGRGVF*
Ga0075425_1005010782	3300006854	Populus Rhizosphere	MDSPHVFFQLAEIVDRLRCIALSMSQRVGVRLRHAERMASQVDMAAFRLSGRGVF*
Ga0075425_1014732421	3300006854	Populus Rhizosphere	MDSPRFFFQSAEIVDRLRCIALSVSERVCVRLRHVERMASAQFDAAAFRLSGRGVF*
Ga0075434_10000696118	3300006871	Populus Rhizosphere	MASPRIFVESAEIADYLRRIALPLSQRTYVRLLHAERRASAQFDAPAFRLSGRGVF*
Ga0075434_1000988582	3300006871	Populus Rhizosphere	MDAQRVFFQSAEIADRLRCIALSTSQRTCVRLLHAERMGSAQFAAAAFRLSGRGVF*
Ga0075426_108262801	3300006903	Populus Rhizosphere	MDSPRVFFASAEIADRLRCIALSISQRTCARLAHAERMASQFDAAAFRLSGRGVF
Ga0075435_1005501322	3300007076	Populus Rhizosphere	MDSARVFFASAEIADRLRCFALSISQRTCARLAHAERMASQFDAAAFRLSGRGVF*
Ga0099791_100065602	3300007255	Vadose Zone Soil	MDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFDAAAFRLPGRGVF*
Ga0066710_1003103423	3300009012	Grasslands Soil	MDSPRFFFQSAEIVDRLRCIALSMSQQACVWLHHAERMASAQFNAAAFRLPGRGVF
Ga0111539_132516601	3300009094	Populus Rhizosphere	IQVFTVSPVPCDLIYQIVPMDSPRVFFASAEIADRLRCFALSISQRTCARLAHAERMASQFDAAAFRLSGRGVF*
Ga0075418_127972671	3300009100	Populus Rhizosphere	PMDSPRVFFASAEIADRLRCIALSISQRTCARLAHAERMASQFDAAAFRLSGRGVF*
Ga0066709_1004053722	3300009137	Grasslands Soil	MDSPRFFFQSAEIVDRLRCIALSMSQQACVWLHHAERMASAQFNAAAFRLPGRGVF*
Ga0114129_103714373	3300009147	Populus Rhizosphere	MDSPRVFFASAEIADRLRCIALSMSQRTCVRLAHAECMASAQFATAAFRLSGRGVF*
Ga0114129_119763381	3300009147	Populus Rhizosphere	SAEIADRLRCIALSISQRTCARLAHAERMASQFDAAAFRLSGRGVF*
Ga0075423_109842572	3300009162	Populus Rhizosphere	MDSPRFFFQSAEIVDRLRCIALSVSERVCLRLRHVERMASAQFDAAAFRLSGRGVF*
Ga0075423_119104012	3300009162	Populus Rhizosphere	FQSAAIADHLRCIALFMSQRTCVRLLRAERIASAQFAAAAFRLSGRGVF*
Ga0126374_110387611	3300009792	Tropical Forest Soil	MESPRFFFQSAEIIDRLRCIALSVSQRISVRLRDAERIAPQFDAAAFRLSGRGVF*
Ga0126380_102676541	3300010043	Tropical Forest Soil	MDSPRVYFASAEIADRLRCIALSISQRTCARRAHAERMASAQFAAAAFRLSGRGVF*
Ga0126380_103153971	3300010043	Tropical Forest Soil	MDSPVVFFELAGVGDRLRCIALSVSHRASVRLRRAERVASAQFDAVAFR
Ga0126380_118006492	3300010043	Tropical Forest Soil	MDAQRAFFQSAEIADRLRCIALSMSQRTCVRLLHAERMGSAQFAAAAFRLSGRGVF*
Ga0126384_100987742	3300010046	Tropical Forest Soil	MDSPCVFFASAEIADRLHCSALSIRGLAYVRLRHAERMASQFDTATFRLPGRGVF*
Ga0126384_110932971	3300010046	Tropical Forest Soil	MDSQRAFFQSAEIVDTLRRIAFSLSQRTCVRLLHAERMASAQFSAAAFRLSGRGVF*
Ga0126384_113721982	3300010046	Tropical Forest Soil	MDSPRVFFASAELADRLRCIALSISRLARVRLHQAERMASQFDTAAYRLPGRGVF*
Ga0126384_116147721	3300010046	Tropical Forest Soil	MDSPRVFFASAEIADRLRCIALSIRQRPCARLAHAERMASAQFAAAAFRLSGRGVF*
Ga0126382_114272171	3300010047	Tropical Forest Soil	MDSQPAFFQSAEIAEHLRRIAVSMSSRTCVRLHAERMASAQFAAAAFRLSGRGVF*
Ga0127456_10064011	3300010140	Grasslands Soil	PRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFNAAAFRLPGRGVF*
Ga0134071_101408902	3300010336	Grasslands Soil	MDSPRFFFQSAEIVDRLRCIVLSVSQRVCVRLRHAERVASAQFDAAAFRLSGRGVF*
Ga0126370_100835204	3300010358	Tropical Forest Soil	MESPRFFFQSAEIIDRLRCIALSVSQRIAVRLRHAERMAPQFDAVAFRLSGRGVF*
Ga0126376_102301002	3300010359	Tropical Forest Soil	MDSPVVFFELAEIADRLRCIALSISQRASERLRRAERMASAQFDAGPFRLYGRGVF*
Ga0126376_124827102	3300010359	Tropical Forest Soil	MESPRFFFQSAEIIDRLRRIALSVSQRISVRLRDAERIAPQFDAAAFRLSGRGVF*
Ga0126372_102873864	3300010360	Tropical Forest Soil	MDAERVFFQSAEIADRLRCIALSMSQRTCVRLLHAERMASAQFAAAAFRLSGRGVF*
Ga0126378_116148891	3300010361	Tropical Forest Soil	MESPRFFFQSAEIIARLRCIALSVSQRIAVRLRHAERMAPQFDAVAFRLSGRGVF*
Ga0126377_101567613	3300010362	Tropical Forest Soil	MDFPHVFFQLAEIVDRLGCVALSTSRRLCSRLRHAERNASKFDVAPFRLSGRGVF*
Ga0126377_101683893	3300010362	Tropical Forest Soil	MDSPCVFFASAEIADRLHCSALSIRGLACVRLRHAERMASQFDTATFRLPGRGVF*
Ga0126377_106274981	3300010362	Tropical Forest Soil	MGSQRVFFQSAELAAHLRCIALSMSQRTCVRLLHAERMGSAQFAAAAFRLSGRGVF*
Ga0126379_104219932	3300010366	Tropical Forest Soil	MDAQRVFFQSVEIADRLRCIALSMSQRTCVRLLHAERMASAQFAAAAFRLSGRGVF*
Ga0126379_136722311	3300010366	Tropical Forest Soil	MESPRFFFQSAEIIDRLRCIALSVSQRIFVRLRHAERMAPQFDAVAFRLSGRGVF*
Ga0126381_1020163843	3300010376	Tropical Forest Soil	PVVFFELAEIGDRLRCIALAISQRASVRLRHAERMASAQLDAVPFRLSGRGVF*
Ga0126381_1047102461	3300010376	Tropical Forest Soil	MESPRFFFQSAEIIARLRCIALSVSQRIAVRLRHAERMAPQFDAAAFRLAGRGVF*
Ga0126383_110518263	3300010398	Tropical Forest Soil	DSPRVFFASAEIADRLRCIALSIRQRPCAQLAHAESMASAQFAAAAFRLSGRGVF*
Ga0126383_113624161	3300010398	Tropical Forest Soil	MDSPVVFFELAEIAGRLRCIALSISQSASARLRRAERMASAQFDAVPFRLSGRGVF*
Ga0137392_116055351	3300011269	Vadose Zone Soil	LISVGAASMDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFDAAAFRLPGRGVF*
Ga0137388_109134011	3300012189	Vadose Zone Soil	AGAASMDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFDAAAFRLPGRGVF*
Ga0137363_102600471	3300012202	Vadose Zone Soil	MNSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFDAAAFRLPGRGVF*
Ga0137374_1001476811	3300012204	Vadose Zone Soil	MDSPRFFFQSAEIVDRLRCIALSMSQRACVRLHHAERMASSQFDAAAFRLPGRGVF*
Ga0137374_104391223	3300012204	Vadose Zone Soil	MDSPRVFFELAEITDRLRCIALSVSQRACVRLHHAECMASVQFDAAAFRLSGRGVF*
Ga0137387_107359591	3300012349	Vadose Zone Soil	ASMDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFDAAAFRLPGRGVF*
Ga0137367_104072043	3300012353	Vadose Zone Soil	MDSPRFFFQSAEIVDRLRCIALSMSQRACVRLHHAVRVASSQFDAAAFRLPGRGVF*
Ga0137369_100136226	3300012355	Vadose Zone Soil	MDSPRFFFQSAEIVDRLRCIALSMSQRACVRLHHAERVASSQFDAAAFRLPGRGVF*
Ga0137360_100079556	3300012361	Vadose Zone Soil	MDSPRFFFQSAEIVDRLRCIAHSMSQHACVWLHHAERMASAQFDAAAFRLPGRGVF*
Ga0134055_12895522	3300012401	Grasslands Soil	SMDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFNAAAFRLPGRGVF*
Ga0134053_14254831	3300012406	Grasslands Soil	ASMDSPRFFFQSAEIVDRLRCIVLSVSQRVCVRLRHAERVASAQFDAAAFRLSGRGVF*
Ga0137373_105554762	3300012532	Vadose Zone Soil	MDSPRVFFELAEITDRLRCIALSMSQRACVRLHHAERVASSQFDAAAFRLPGRGVF*
Ga0137395_106588181	3300012917	Vadose Zone Soil	MDSPRFFFQSAEIVDRLRCIALSVSERVCVRLRHAERMASAQFDAAAFRLSGRGVF*
Ga0137407_117149771	3300012930	Vadose Zone Soil	MDSPRVFFDLAEITDRLRCIALSVSQRACVRLRHAERMASAQFDAPAFRLSGRGVF*
Ga0137407_123320512	3300012930	Vadose Zone Soil	AASMDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFNAAAFRLPGRGVF*
Ga0126375_109235982	3300012948	Tropical Forest Soil	MDSPLVYFASAEIADRLRCIALSISQRTCARRAHAERMASAQFAAAAFRLSGRGVF*
Ga0134077_100739723	3300012972	Grasslands Soil	MDSPRFFFQSAEIVDRLRCIAISISQRACVQLRHAERMASQFDAAAFRLSGRGVF*
Ga0134112_104753921	3300017656	Grasslands Soil	MDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFDAAAFRLSGRGVF
Ga0134083_102415721	3300017659	Grasslands Soil	MDSPRFFFQSAEIVDRLRCIVLSVSQRVCVRLRHAERVASAQFDAAAFRLSGRGVF
Ga0184637_1000607711	3300018063	Groundwater Sediment	MDSPRVFFELAEITDRLRCIALSVSQRACVRLCHAECMASVQFDAAAFRLSGRGVF
Ga0207646_106792622	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MESLRVFFESADIANRLRCIAISISQRACVRLRHAERMASQFDAAAFRLSGRGVF
Ga0209802_10229803	3300026328	Soil	MHSPRFFFQSAEIVDRLRCIALSMSRRVCVRLHHAERMASAQFDVAAFRLSGRGVF
Ga0209802_11226023	3300026328	Soil	MESLDIFFESAAIADRLRCIAISISQRACVQLRHAERMASQFDAAAFRLSGRGVF
Ga0209690_11131653	3300026524	Soil	HSPRFFFQSAEIVDRLRCIALSMSRRVCVRLHHAERMASAQFDVAAFRLSGRGVF
Ga0209806_11998271	3300026529	Soil	SPRFFFQSAEIVDRLRCIALSMSRRVCVRLHHAERMASAQFDVAAFRLSGRGVF
Ga0209157_10158628	3300026537	Soil	MDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFNAAAFRLPGRGVF
Ga0209684_10752001	3300027527	Tropical Forest Soil	MDSPVVFFELADIADRLRCIALSISRRASVWRRRAERVASARFDAVPFRLAGR
Ga0209466_11127231	3300027646	Tropical Forest Soil	ASMEAQRVFFQSAEIADRLRCIALSMSQRTCVRLLHAERMGSAQFAAAAFRLSGRGVF
Ga0209388_10538232	3300027655	Vadose Zone Soil	MDSPRFFFQSAEIVDRLRCIALSMSQHACVWLHHAERMASAQFDAAAFRLPGRGVF
Ga0209814_103305881	3300027873	Populus Rhizosphere	MASPRIFVESAEIADYLRRIALPLSQRTYVRLLHAERRASAQFDAPAFRLSGRGVF
Ga0307498_101138152	3300031170	Soil	MDFPGVFFEFAEIADRLRCIALSMSQRVCVRLRHAERMASAQFDAAAFRLSGRGVF
Ga0307469_100577412	3300031720	Hardwood Forest Soil	MDSSRVFFASAEIADRLCCIALSISQRTCARLAHAERTASQFDAAAFRLSGRGVF
Ga0307469_103286541	3300031720	Hardwood Forest Soil	MDSLRAFFQSAEIAAHLRCIALSMSQRTCVRLLHAERMASAQFAAAAFRLSGRGVF
Ga0307469_105144032	3300031720	Hardwood Forest Soil	MDAQRVFFQSAEIADRLRCIALSTSQRTCVRLLHAERMGSAQFAAAAFRLSGRGVF
Ga0307469_106887591	3300031720	Hardwood Forest Soil	PCDLIYQIVPMDSPRVFFASAEIADRLRCIALSMSQRTCARLAHAECMASAQFATAAFRLSGRGVF
Ga0307468_1002883862	3300031740	Hardwood Forest Soil	MDSPRVFFASAEIADRLRCIALSMSQRTCARLAHAECMASAQFATAAFRLSGRGVF
Ga0307473_105598571	3300031820	Hardwood Forest Soil	SAEIAAHLRCIALSMSQRTCVRLLHAERMASAQFAAAAFRLSGRGVF
Ga0306922_104993782	3300032001	Soil	MESPRFFFQSAEIIDRLRCIALSVSQRISVRLRHAERMAPQFDAVAFRLSGRGVF
Ga0307471_1001585095	3300032180	Hardwood Forest Soil	MDSSRVFFASAEIADRLCCIALSISQRTCARLAHAERMASQFDAAAFRLSGRGVF
Ga0307471_1005185092	3300032180	Hardwood Forest Soil	MESACAFFESAEIADRLRCIALSMSQRVCVRLRHAERMASQFDTIAFHLSGRGVF
Ga0307471_1022829201	3300032180	Hardwood Forest Soil	MDSPSFFCQSAEIVDRLRWLALSISHRACVRLRHAERKASAQFDSAAFRLSGRGVF
Ga0307472_1009946971	3300032205	Hardwood Forest Soil	MDSPRFFFQSAEIVDRLRCIALSVSERVCVRLRHVERMASAQFDAAAFRLSGRGVF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086874

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences