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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F073220 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 120 |
| Average Sequence Length | 45 residues |
| Representative Sequence | TDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Number of Associated Samples | 96 |
| Number of Associated Scaffolds | 120 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 14.17 % |
| % of genes near scaffold ends (potentially truncated) | 90.83 % |
| % of genes from short scaffolds (< 2000 bps) | 89.17 % |
| Associated GOLD sequencing projects | 91 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.52 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (87.500 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.833 % of family members) |
| Environment Ontology (ENVO) | Unclassified (23.333 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (44.167 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.39% β-sheet: 0.00% Coil/Unstructured: 48.61% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 120 Family Scaffolds |
|---|---|---|
| PF14104 | DUF4277 | 85.83 |
| PF04365 | BrnT_toxin | 0.83 |
| PF01609 | DDE_Tnp_1 | 0.83 |
| PF02371 | Transposase_20 | 0.83 |
| PF01797 | Y1_Tnp | 0.83 |
| PF00480 | ROK | 0.83 |
| PF05685 | Uma2 | 0.83 |
| PF01814 | Hemerythrin | 0.83 |
| PF08722 | Tn7_TnsA-like_N | 0.83 |
| COG ID | Name | Functional Category | % Frequency in 120 Family Scaffolds |
|---|---|---|---|
| COG1940 | Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain | Transcription [K] | 1.67 |
| COG1943 | REP element-mobilizing transposase RayT | Mobilome: prophages, transposons [X] | 0.83 |
| COG2929 | Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system | Defense mechanisms [V] | 0.83 |
| COG3039 | Transposase and inactivated derivatives, IS5 family | Mobilome: prophages, transposons [X] | 0.83 |
| COG3293 | Transposase | Mobilome: prophages, transposons [X] | 0.83 |
| COG3385 | IS4 transposase InsG | Mobilome: prophages, transposons [X] | 0.83 |
| COG3547 | Transposase | Mobilome: prophages, transposons [X] | 0.83 |
| COG4636 | Endonuclease, Uma2 family (restriction endonuclease fold) | General function prediction only [R] | 0.83 |
| COG5421 | Transposase | Mobilome: prophages, transposons [X] | 0.83 |
| COG5433 | Predicted transposase YbfD/YdcC associated with H repeats | Mobilome: prophages, transposons [X] | 0.83 |
| COG5659 | SRSO17 transposase | Mobilome: prophages, transposons [X] | 0.83 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 87.50 % |
| All Organisms | root | All Organisms | 12.50 % |
| Visualization |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 20.83% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 20.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 5.83% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 5.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 5.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.17% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 3.33% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 3.33% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 2.50% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 1.67% |
| Thermal Springs | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs | 1.67% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.67% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.67% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.67% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.67% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.67% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.67% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 1.67% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.67% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere | 1.67% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.67% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.83% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.83% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.83% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.83% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.83% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.83% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.83% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.83% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.83% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.83% |
| Agave | Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave | 0.83% |
| Visualization |
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000559 | Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly | Environmental | Open in IMG/M |
| 3300000564 | Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B | Environmental | Open in IMG/M |
| 3300000596 | Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC | Environmental | Open in IMG/M |
| 3300000709 | Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance | Environmental | Open in IMG/M |
| 3300000754 | Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB | Environmental | Open in IMG/M |
| 3300000890 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300002899 | Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607) | Environmental | Open in IMG/M |
| 3300003373 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Host-Associated | Open in IMG/M |
| 3300003659 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Host-Associated | Open in IMG/M |
| 3300005174 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 | Environmental | Open in IMG/M |
| 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 | Host-Associated | Open in IMG/M |
| 3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
| 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 | Environmental | Open in IMG/M |
| 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Host-Associated | Open in IMG/M |
| 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
| 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
| 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005540 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 | Environmental | Open in IMG/M |
| 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Environmental | Open in IMG/M |
| 3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Host-Associated | Open in IMG/M |
| 3300006049 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 | Host-Associated | Open in IMG/M |
| 3300006058 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 | Host-Associated | Open in IMG/M |
| 3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
| 3300006846 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Host-Associated | Open in IMG/M |
| 3300006847 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Host-Associated | Open in IMG/M |
| 3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Host-Associated | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300006914 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Host-Associated | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009157 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 | Environmental | Open in IMG/M |
| 3300009168 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 | Environmental | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300009691 | Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2 | Environmental | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
| 3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
| 3300015053 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300019767 | Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T | Environmental | Open in IMG/M |
| 3300025149 | Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2 (SPAdes) | Environmental | Open in IMG/M |
| 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026326 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes) | Environmental | Open in IMG/M |
| 3300027718 | Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027873 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027909 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028592 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30 | Environmental | Open in IMG/M |
| 3300028889 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2 | Environmental | Open in IMG/M |
| 3300030546 | Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb11 (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030570 | Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb12 (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Host-Associated | Open in IMG/M |
| 3300031561 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 | Environmental | Open in IMG/M |
| 3300031573 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 | Environmental | Open in IMG/M |
| 3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031751 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031777 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031797 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031940 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2 | Environmental | Open in IMG/M |
| 3300031941 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080 | Environmental | Open in IMG/M |
| 3300031944 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300031981 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25 | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032041 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22 | Environmental | Open in IMG/M |
| 3300032060 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 | Environmental | Open in IMG/M |
| 3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
| 3300032068 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21 | Environmental | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300033290 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15 | Environmental | Open in IMG/M |
| 3300033551 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| F14TC_1002298843 | 3300000559 | Soil | MINIYPLIDIEQVLREKKSFTLRCMLDDIKELQGRVAHWNRFASSVSITED* |
| RepKanNP_BrdU_F12BDRAFT_10073842 | 3300000564 | Soil | NGVCTDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNKFASSVSITSA* |
| KanNP_Total_noBrdU_T14TCDRAFT_10034843 | 3300000596 | Soil | LILFTDIEQVLIEKKPFILRCMLDCIKKRQGRIVIWNRFTLSVSIT* |
| KanNP_Total_F14TBDRAFT_10008551 | 3300000709 | Soil | XPDIEQVLREKKSFTLRGMLDGIKTLQGRVVTWNRFASSVSIT* |
| KanNP_Total_F14TBDRAFT_10009871 | 3300000709 | Soil | SYIDIEQVLREKKSFTLRCMLDDIKELQGRVAQWNRFASSVSIT* |
| KanNP_Total_F14TBDRAFT_10011922 | 3300000709 | Soil | TDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNKFASSVSITSA* |
| JGI11851J11668_10066371 | 3300000754 | Soil | IDIEQVLREKKSFTLRCMLDDIKELQGRVAQWNRFASSVSIT* |
| JGI11643J12802_102954561 | 3300000890 | Soil | CRATYGFILFLTDIEQVLREKKSFTLRGMLDGIKTLQGRVVTWNRFASSVSIT* |
| JGI11643J12802_118753773 | 3300000890 | Soil | EQVLGEKNPFILPCMLDGIKELQGRAIKWNRCASSVSIT* |
| JGIcombinedJ43975_100077512 | 3300002899 | Soil | ITDIEQVLREKKSFTLRGMLDGIKTLQGRVVTWNRFASSVSIT* |
| JGIcombinedJ43975_100134031 | 3300002899 | Soil | TDIEQVLREKKPFILRCMLDGIKKLQGRIVKWNRCALSVSITWA* |
| JGI25407J50210_100197201 | 3300003373 | Tabebuia Heterophylla Rhizosphere | LVGDXTDIEQVLREKKPFILRCMLDGIQKRQGRMVKWHRFALSVSIT* |
| JGI25407J50210_100200661 | 3300003373 | Tabebuia Heterophylla Rhizosphere | TDIEQVLREKKSFTLRCMLDGIKTLQGRVVTWNRFASSVSIT* |
| JGI25404J52841_100139262 | 3300003659 | Tabebuia Heterophylla Rhizosphere | ADIEQVLREKKSFTLRFVLDCIKELQGRVAIWNRCASSVSIISA* |
| Ga0066680_108152462 | 3300005174 | Soil | DIEQVLREKKSFTLRCMLDGIKELQGRAAKWNRFASSVSITWA* |
| Ga0065704_101231452 | 3300005289 | Switchgrass Rhizosphere | SDIEQVLREKKSFTLRCMLNCIKELQGRVAKWNRFASSVSII* |
| Ga0065705_100104061 | 3300005294 | Switchgrass Rhizosphere | PDIEQVLREKKSFTLRCMLDCIQELQGRVAKWNRFVSSVSII* |
| Ga0065707_100191403 | 3300005295 | Switchgrass Rhizosphere | EPSRIPDIEQVLREKKSFTLRCMLDCIQELQGRVAKWNRFVSSVSII* |
| Ga0070676_105514861 | 3300005328 | Miscanthus Rhizosphere | ADIEQVLREKKPFILRCMLDGLKKLQGSMVQWNRCVLSVSITWACLLL* |
| Ga0066388_1003493221 | 3300005332 | Tropical Forest Soil | TDIEQVLREKKSFTLRCILDGIQELQGRIVTWNRCASSVSITSACSLL* |
| Ga0066388_1040487152 | 3300005332 | Tropical Forest Soil | SDIEQVLREKKPFILRCMLDGIKKLQGRIVKWYRCALSVSITWA* |
| Ga0066388_1041178871 | 3300005332 | Tropical Forest Soil | MSLKILESDSDIEQVLREKKPFILRCMLAGIKKLQGRMVQWNRCALS |
| Ga0068869_1014983101 | 3300005334 | Miscanthus Rhizosphere | TDIEQVLREKKPFILRGMLDGLKKLQGSMVQWNRCVLSVSITWACLLL* |
| Ga0068868_1002184611 | 3300005338 | Miscanthus Rhizosphere | IEQVLREKKSFTLRCMLDCIQELQGRVAKWNRFVSSVSII* |
| Ga0070668_1012308662 | 3300005347 | Switchgrass Rhizosphere | TDIEQVLREKKPFILRCMLDGIKELQGRMVKWNRCALSVSITWA* |
| Ga0070700_1001617341 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | DIEQVLREKKSFTLRCMLDCIQELQGRGAKWNRFVSSVSII* |
| Ga0070662_1004550172 | 3300005457 | Corn Rhizosphere | QVLREKKPFILRCMLDGIKELQGRMVKWNRCALSVSITWA* |
| Ga0068867_1004644102 | 3300005459 | Miscanthus Rhizosphere | SDIEQLFRERKPFILPCMLDGIEKLQGRVVKWNRFASSVSIT* |
| Ga0066697_101551471 | 3300005540 | Soil | ADIEQVLREKKSFTLRCILDCIKELQGRVAIWNRCASSVSII* |
| Ga0070686_1007911221 | 3300005544 | Switchgrass Rhizosphere | ADIEQVLREKKPFILRCMLDGLKKLQGRMVQWNRCVLSVSITWACLLL* |
| Ga0070686_1012434731 | 3300005544 | Switchgrass Rhizosphere | ADIEQVLREKKSFTLRCMLDCIQELQGRGAKWNRFVSSVSII* |
| Ga0066905_1006722782 | 3300005713 | Tropical Forest Soil | LREKKSFTLRCMLDGIKELQGRVVTWNKFASSVSITSA* |
| Ga0066903_1038445361 | 3300005764 | Tropical Forest Soil | DIEQVLREKKPFILRCMLDGIKKLQRRIVTWNRCALSVSITWA* |
| Ga0066903_1064370702 | 3300005764 | Tropical Forest Soil | VTTDIEQVLREKKPFILRCMLAGIKKLQGRMVQWNRCALSVS |
| Ga0066903_1077754481 | 3300005764 | Tropical Forest Soil | EKKPFILRCMLDGVQKRQGRMVKGHRVALSVSITEA* |
| Ga0068863_1012859421 | 3300005841 | Switchgrass Rhizosphere | ADIEQVLREKKPFILRGMLDGLKKLQGRMVQWNRCVLSVSITWACLLL* |
| Ga0081540_12122283 | 3300005983 | Tabebuia Heterophylla Rhizosphere | MIHIPLVSDIEQVLRENKSFTLRCMLDGIQELQGRVDTWNKYASSVSITSACS |
| Ga0075417_101424341 | 3300006049 | Populus Rhizosphere | DIEQVLREKKSFTLRCMLNGIKELQGRAVTWNRCASSVSITSV* |
| Ga0075432_103953631 | 3300006058 | Populus Rhizosphere | PDIEQVLREKKSFTLRCMLNGIKELQGRAVTWNRCASSVSITSV* |
| Ga0075428_1007362812 | 3300006844 | Populus Rhizosphere | VLREKKSFTLCCMLDGIKKLQGRVGTWNRFASSVS |
| Ga0075428_1013418271 | 3300006844 | Populus Rhizosphere | TDIEQVLREKKSFTLRCMLDCIKERQGRVVTWNRFASSGSITWA* |
| Ga0075430_1005430331 | 3300006846 | Populus Rhizosphere | DIEQVLREKKPFILRCMLDGIKKRQGRMVTWHRFALSVSIT* |
| Ga0075431_1013383641 | 3300006847 | Populus Rhizosphere | TDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSIT* |
| Ga0075433_100509402 | 3300006852 | Populus Rhizosphere | MSDIEQVLREKKPFILRCMLDGIKKLQGRMVKWHRCALSVSITWA* |
| Ga0075433_103763512 | 3300006852 | Populus Rhizosphere | TDIEQVLREKKSFTLRCMFDGIKELQGRVVTWNRFASSVSITSA* |
| Ga0075434_1003971372 | 3300006871 | Populus Rhizosphere | ADIEQVLREKKPFILRCMLDGIKKLQGRMVKWHRCALSVSITWA* |
| Ga0075434_1005895572 | 3300006871 | Populus Rhizosphere | SDIEQVLREKKSFTLCCMLDGIKKLQGRVGTWNRFASSVSITSA* |
| Ga0075429_1006986251 | 3300006880 | Populus Rhizosphere | MLRIPARPKIVFLSDIEQVLREKKSFTLCCMLDGIKKLQGRVGTWNRFASSV |
| Ga0075424_1005337742 | 3300006904 | Populus Rhizosphere | ADIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA* |
| Ga0075436_1001698341 | 3300006914 | Populus Rhizosphere | DIEQVLREKKSFTLRCMLDGIKERQGRVVTWNRFASSGSITWA* |
| Ga0075435_1005084641 | 3300007076 | Populus Rhizosphere | DIEQVLREKNSFTLRCMLDGIKELQGRVVTWNRFASSVLITSA* |
| Ga0075418_101955313 | 3300009100 | Populus Rhizosphere | DIEQVLREKKSFTLCCMLDGIKKLQGRVGTWNRFASSVSITSA* |
| Ga0075418_121392381 | 3300009100 | Populus Rhizosphere | VLREKKSFTLCCMLDGIKKLQGRVGTWNRFASSVSI |
| Ga0114129_100225216 | 3300009147 | Populus Rhizosphere | MSDIEQVLREKKPFILRCMLDGIKKLQGRIVKWYRCALSVSITWA* |
| Ga0114129_133149712 | 3300009147 | Populus Rhizosphere | DIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSIT* |
| Ga0105092_101004993 | 3300009157 | Freshwater Sediment | VPNKKKPFILHCMLDGIKKLQGRVVKWNRFASSVSIIEA* |
| Ga0105104_109303501 | 3300009168 | Freshwater Sediment | TVTDIEQVLREKKPVILHCMLDGLKKLQGRVVTWNRFASRVSST* |
| Ga0105249_101292105 | 3300009553 | Switchgrass Rhizosphere | VTIADIEQVLREKKSFTLRCMLDCIQELQGRVAKWNRFVSSVSI |
| Ga0105249_107494211 | 3300009553 | Switchgrass Rhizosphere | DIEQVLREKKSFTLRCMLDCIQELQGRVAKWNRFVSSVSII* |
| Ga0114944_12286562 | 3300009691 | Thermal Springs | VLREKKSFTLRCMRDGIKELQGRVAQGNRFASSVSII* |
| Ga0126380_119653971 | 3300010043 | Tropical Forest Soil | TDIEQVLREKKPFILRCMLDGIKKLQGRIVKWYRCALSVSITWA* |
| Ga0126382_102615731 | 3300010047 | Tropical Forest Soil | ADIEQVLREKKSFTLRCMLDCIKALQGRVAIGNRCASSVSIISACSLL* |
| Ga0126377_101460661 | 3300010362 | Tropical Forest Soil | TDIEQVLREKKSFTLRCMLDCIKELQGRVAKWNRFASSVSII* |
| Ga0126377_104392701 | 3300010362 | Tropical Forest Soil | ADIEQVLREKKPFILRCVLDGIKKLQGRIIKWNRCALSVSITWACLLL* |
| Ga0134127_104897031 | 3300010399 | Terrestrial Soil | KRMQIILSADIEQVLREKKSFTLRCMLDCIQELQGRVAEWNRFVSSVSII* |
| Ga0105246_108160431 | 3300011119 | Miscanthus Rhizosphere | TDIEQVLREKKPFILRCMLDGLKKLQGRMVQWNRCVLSVSITWACLLL* |
| Ga0137397_109694722 | 3300012685 | Vadose Zone Soil | DIEQVHREQKPFILRCMLDGIKKLQGRVVKWNRSASSVSITEA* |
| Ga0137405_12825371 | 3300015053 | Vadose Zone Soil | NFEIACTPDIEQVQVPREKKPFILRCMLDGLEKLQGRVVKWNRFASSVSII* |
| Ga0132256_1000127865 | 3300015372 | Arabidopsis Rhizosphere | VPRIGLYLLPDTDIEQVLREKKPVILRRKLDGIKKLPGRMLTWHRGALSVSITWA* |
| Ga0163161_108513852 | 3300017792 | Switchgrass Rhizosphere | ADIEQVLREKKPFILRCMLDGIKELQGRMVKWNRCALSVSITWA |
| Ga0163161_119490432 | 3300017792 | Switchgrass Rhizosphere | MPDIEQLFRERKPFILPCMLDGIEKLQGRVVKWNRFASSVSIT |
| Ga0190267_101873011 | 3300019767 | Soil | ADIEQVLREKKSFTLRCMLDGIKELQGRVVTWNKFASSVSITSA |
| Ga0209827_113203452 | 3300025149 | Thermal Springs | VLREKKSFTLRCMRDGIKELQGRVAQGNRFASSVSII |
| Ga0207687_103628082 | 3300025927 | Miscanthus Rhizosphere | TLTDIEQVLREKKSFTLRCMLDCIQELQGRGAKWNRFVSSVSII |
| Ga0207712_115652342 | 3300025961 | Switchgrass Rhizosphere | VADIEQVLREKKPFILRCMLDGLKKLQGRMVQWNRCVLSVSITWACLLL |
| Ga0207677_111524492 | 3300026023 | Miscanthus Rhizosphere | DLLSRADIEQVLREKKPFILRCMLDGLKKLQGRMVQWNRCVLSVSITWACLLL |
| Ga0209801_10939601 | 3300026326 | Soil | DCLWESQKHYCTTDIEQVLREKKSFTLRCILDCIKELQGRVAIWNRCASSVSII |
| Ga0209795_100310231 | 3300027718 | Agave | ITDIEQVLREKKSFTLRGMLDGIKTLQGRVVTWNRFASSVSIT |
| Ga0209814_100486972 | 3300027873 | Populus Rhizosphere | IEQVLREKKSFTLRCMLDCIKELQGRVAKWNRFASSVSII |
| Ga0209382_103048622 | 3300027909 | Populus Rhizosphere | AAQADIEQVLREKKPFILRRKLDGIKKLPGRIIKWNRCALSVSITWA |
| Ga0209382_103135001 | 3300027909 | Populus Rhizosphere | SSLQTDIEQVLREKNSFTLRCMLDGIKELQGRVVTWNKFASSVSITSA |
| Ga0209382_105683261 | 3300027909 | Populus Rhizosphere | DIEQVLREKKSFTLRCMLNGIKELQGRAVTWNRCASSVSITSV |
| Ga0209382_107864421 | 3300027909 | Populus Rhizosphere | PAFITDIEQVLREKKSFTLRCMLDCIKERQGRVVTWNRFASSGSITWA |
| Ga0209382_110860553 | 3300027909 | Populus Rhizosphere | LTSIADIEQVLREKKSFTLRCILDRLKELQGRVGPWNRFASSVSIT |
| Ga0247822_102569521 | 3300028592 | Soil | VMVVALSDIEQVLREKKSFTLRCMLDCIQELQGRGAKWNRFVSSVSII |
| Ga0247827_101268972 | 3300028889 | Soil | KAVTDIEQVLREKKSFTLRCMLDGIKKLQGRVGTWNRFASSVSITSA |
| Ga0247646_10010711 | 3300030546 | Soil | MKFIDILADIEQVLREKKSFTLRCMLDGIKALQGRIATWNRFALSVSILSA |
| Ga0247647_10084863 | 3300030570 | Soil | MKSLCCLKRVPRTDIEQVLREKKSFTLRCMLDGIKELQGRIATWNRFALSVSILSA |
| Ga0318541_100757862 | 3300031545 | Soil | HAVTDIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0307408_1010481532 | 3300031548 | Rhizosphere | VLREKKSFTLRCMLDGIKELQGRVVTWNKFASSVSITSA |
| Ga0318528_105446431 | 3300031561 | Soil | CIPTTDIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0310915_100873992 | 3300031573 | Soil | PDPDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0318542_100492552 | 3300031668 | Soil | IVGTDIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0307469_120284942 | 3300031720 | Hardwood Forest Soil | WKIKRLTDIEQELREKKSFTLRCMLDGIKELQGRVVTWNKFASSVSITSA |
| Ga0307468_1009936221 | 3300031740 | Hardwood Forest Soil | EQVLREKKSFTLRCMLDGIQELQGRVVTWNKFASSVSITSA |
| Ga0318494_102617861 | 3300031751 | Soil | LKTHCGDLLADIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0318546_100915791 | 3300031771 | Soil | LVVDLKTEVRMGCPIADIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0318546_101176701 | 3300031771 | Soil | LRTDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0318543_101564262 | 3300031777 | Soil | GKADIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0318547_102036231 | 3300031781 | Soil | AITNPDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0318550_100508221 | 3300031797 | Soil | TTDIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0310917_101049712 | 3300031833 | Soil | PTDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0318520_100820562 | 3300031897 | Soil | LAVTTLVSDIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0306923_103277901 | 3300031910 | Soil | ERTDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0310901_100383292 | 3300031940 | Soil | SCKTDIEQVLREKKSFTLRCMLDCIQELQGRGAKWNRFVSSVSII |
| Ga0310912_100898441 | 3300031941 | Soil | SKNLISLSDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0310884_100717952 | 3300031944 | Soil | SCRTDIEQVLREKKSFTLRCMLDCIQELQGRGAKWNRFVSSVSII |
| Ga0310910_101363411 | 3300031946 | Soil | VSDIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0310909_101620251 | 3300031947 | Soil | PLTDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0318531_103692941 | 3300031981 | Soil | EQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0310911_100518772 | 3300032035 | Soil | TEVRMGCPIADIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0318549_100431211 | 3300032041 | Soil | AETSPTTDIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0318549_101571582 | 3300032041 | Soil | AEEPVSSDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0318505_101571412 | 3300032060 | Soil | TDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0318514_100595892 | 3300032066 | Soil | LGTDIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0318553_101830901 | 3300032068 | Soil | ADIEQVLREKKPFILRCMLDGIKKLQGRMVTWNRCALSVSITWA |
| Ga0310890_101387112 | 3300032075 | Soil | AMLNLSLLALNLSPLSDIEQVLREKKSFTLRCMLDCIQELQGRGAKWNRFVSSVSII |
| Ga0306924_102531432 | 3300032076 | Soil | EGIVITDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0318519_100586911 | 3300033290 | Soil | VKVYPLPDIEQVLREKKSFTLRCMLDGIKELQGRVVTWNRFASSVSITSA |
| Ga0247830_101074651 | 3300033551 | Soil | RIRITDIEQVLREKKSFTLRCMLDCIQELQGRGAKWNRFVSSVSII |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |