Metagenome / Metatranscriptome Family F059321

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059321
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	44 residues
Representative Sequence	LGCRISGLARPELLVEIEVTAVKGAGAGIEWIGPDAADPLDAS
Number of Associated Samples	118
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.76 %
% of genes from short scaffolds (< 2000 bps)	92.54 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.552 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (13.433 % of family members)
Environment Ontology (ENVO)	Unclassified (24.627 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.791 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.63% β-sheet: 23.94% Coil/Unstructured: 70.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF05685	Uma2	11.94
PF00107	ADH_zinc_N	8.96
PF00497	SBP_bac_3	4.48
PF02852	Pyr_redox_dim	3.73
PF00578	AhpC-TSA	2.99
PF00753	Lactamase_B	2.99
PF03330	DPBB_1	2.99
PF02423	OCD_Mu_crystall	2.24
PF02417	Chromate_transp	2.24
PF13649	Methyltransf_25	2.24
PF08241	Methyltransf_11	2.24
PF07992	Pyr_redox_2	1.49
PF01464	SLT	1.49
PF07690	MFS_1	1.49
PF13302	Acetyltransf_3	1.49
PF02720	DUF222	1.49
PF02705	K_trans	1.49
PF04392	ABC_sub_bind	1.49
PF03061	4HBT	0.75
PF08240	ADH_N	0.75
PF04909	Amidohydro_2	0.75
PF00144	Beta-lactamase	0.75
PF00528	BPD_transp_1	0.75
PF00656	Peptidase_C14	0.75
PF12146	Hydrolase_4	0.75
PF02313	Fumarate_red_D	0.75
PF03473	MOSC	0.75
PF13620	CarboxypepD_reg	0.75
PF01963	TraB_PrgY_gumN	0.75
PF01593	Amino_oxidase	0.75
PF01575	MaoC_dehydratas	0.75
PF00583	Acetyltransf_1	0.75
PF00581	Rhodanese	0.75
PF14226	DIOX_N	0.75
PF13267	DUF4058	0.75
PF02585	PIG-L	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	11.94
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	2.24
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	2.24
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.49
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	1.49
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.75
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.75
COG1916	Pheromone shutdown protein TraB, contains GTxH motif (function unknown)	Function unknown [S]	0.75
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.75
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.75
COG3080	Fumarate reductase subunit D	Energy production and conversion [C]	0.75
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.30 %
Unclassified	root	N/A	9.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.30 %
Unclassified	root	N/A	9.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.55 %
Unclassified	root	N/A	9.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.75 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	30.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.70 %
Unclassified	root	N/A	9.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.24 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.75 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.75 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.75 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	30.60 %
Unclassified	root	N/A	9.70 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.49 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.75 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.75 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	30.60 %
Unclassified	root	N/A	9.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.49 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.75 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.75 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.75 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	20.15 %
Unclassified	root	N/A	9.70 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.75 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.75 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	20.15 %
Unclassified	root	N/A	9.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.75 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_13805009	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300000564\|RepKanNP_BrdU_F12BDRAFT_1013470	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300001431\|F14TB_100294225	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300002911\|JGI25390J43892_10101663	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	646	Open in IMG/M
3300003324\|soilH2_10364186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1354	Open in IMG/M
3300004281\|Ga0066397_10098244	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300004463\|Ga0063356_101066703	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300004480\|Ga0062592_101188898	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300004633\|Ga0066395_10130055	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300005181\|Ga0066678_10992482	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005332\|Ga0066388_101731998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1107	Open in IMG/M
3300005436\|Ga0070713_102168740	All Organisms → cellular organisms → Archaea	538	Open in IMG/M
3300005438\|Ga0070701_10662721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	698	Open in IMG/M
3300005457\|Ga0070662_101997393	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005547\|Ga0070693_101448289	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005549\|Ga0070704_100174737	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
3300005552\|Ga0066701_10589027	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300005557\|Ga0066704_10545380	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	756	Open in IMG/M
3300005578\|Ga0068854_101652799	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300005713\|Ga0066905_100571267	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300005713\|Ga0066905_101409180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631	Open in IMG/M
3300005718\|Ga0068866_11144456	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300005719\|Ga0068861_100477687	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1122	Open in IMG/M
3300005764\|Ga0066903_100403471	All Organisms → cellular organisms → Bacteria → Proteobacteria	2251	Open in IMG/M
3300005841\|Ga0068863_100678066	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300006049\|Ga0075417_10724736	Not Available	512	Open in IMG/M
3300006169\|Ga0082029_1523321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300006845\|Ga0075421_101270321	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300006845\|Ga0075421_102039934	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300006847\|Ga0075431_100616607	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300006852\|Ga0075433_11460728	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	591	Open in IMG/M
3300006853\|Ga0075420_101437802	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	591	Open in IMG/M
3300006880\|Ga0075429_100470395	All Organisms → cellular organisms → Bacteria → Proteobacteria	1101	Open in IMG/M
3300006880\|Ga0075429_101344195	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	623	Open in IMG/M
3300006914\|Ga0075436_100957343	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300006914\|Ga0075436_101072276	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300006969\|Ga0075419_11413774	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300007076\|Ga0075435_101649828	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300009012\|Ga0066710_102686757	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	711	Open in IMG/M
3300009100\|Ga0075418_12860450	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	527	Open in IMG/M
3300009137\|Ga0066709_102844516	Not Available	640	Open in IMG/M
3300009444\|Ga0114945_10786790	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	583	Open in IMG/M
3300009792\|Ga0126374_10253261	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1151	Open in IMG/M
3300009792\|Ga0126374_11223513	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	603	Open in IMG/M
3300009810\|Ga0105088_1079045	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300009814\|Ga0105082_1086506	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300009822\|Ga0105066_1175033	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300010047\|Ga0126382_10041664	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2617	Open in IMG/M
3300010047\|Ga0126382_10417752	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300010048\|Ga0126373_10995132	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300010303\|Ga0134082_10131668	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300010323\|Ga0134086_10271714	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	651	Open in IMG/M
3300010358\|Ga0126370_10556131	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300010359\|Ga0126376_10494848	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1130	Open in IMG/M
3300010359\|Ga0126376_10598723	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1042	Open in IMG/M
3300010361\|Ga0126378_10331484	All Organisms → cellular organisms → Bacteria → Proteobacteria	1629	Open in IMG/M
3300010362\|Ga0126377_10799430	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300010366\|Ga0126379_10256403	Not Available	1726	Open in IMG/M
3300010366\|Ga0126379_12456561	Not Available	620	Open in IMG/M
3300010376\|Ga0126381_100980109	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1219	Open in IMG/M
3300010376\|Ga0126381_102387810	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300010397\|Ga0134124_10769751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	959	Open in IMG/M
3300010398\|Ga0126383_10432778	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1360	Open in IMG/M
3300010398\|Ga0126383_10547875	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1222	Open in IMG/M
3300010398\|Ga0126383_13213526	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300010403\|Ga0134123_10421078	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300010403\|Ga0134123_10600557	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300010403\|Ga0134123_11368485	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300012040\|Ga0137461_1056979	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300012174\|Ga0137338_1014819	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300012203\|Ga0137399_10719185	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	841	Open in IMG/M
3300012210\|Ga0137378_10433531	Not Available	1218	Open in IMG/M
3300012225\|Ga0137434_1026582	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300012350\|Ga0137372_10530834	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	872	Open in IMG/M
3300012360\|Ga0137375_11207443	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012582\|Ga0137358_10034655	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3327	Open in IMG/M
3300012582\|Ga0137358_10236819	Not Available	1243	Open in IMG/M
3300012582\|Ga0137358_10812407	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300012922\|Ga0137394_10138121	All Organisms → cellular organisms → Bacteria	2070	Open in IMG/M
3300012929\|Ga0137404_10084701	All Organisms → cellular organisms → Bacteria → Proteobacteria	2521	Open in IMG/M
3300012971\|Ga0126369_12185239	Not Available	641	Open in IMG/M
3300013306\|Ga0163162_10141261	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2521	Open in IMG/M
3300014882\|Ga0180069_1090955	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300014884\|Ga0180104_1089411	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	866	Open in IMG/M
3300015053\|Ga0137405_1009784	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	557	Open in IMG/M
3300015259\|Ga0180085_1250746	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300015358\|Ga0134089_10171097	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	865	Open in IMG/M
3300015359\|Ga0134085_10409083	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300017656\|Ga0134112_10358394	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	596	Open in IMG/M
3300018078\|Ga0184612_10148054	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300018078\|Ga0184612_10610634	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	516	Open in IMG/M
3300018079\|Ga0184627_10135567	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1304	Open in IMG/M
3300018422\|Ga0190265_11495084	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	789	Open in IMG/M
3300018431\|Ga0066655_10954635	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300019458\|Ga0187892_10065574	All Organisms → cellular organisms → Bacteria	2358	Open in IMG/M
3300021081\|Ga0210379_10453047	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300022534\|Ga0224452_1073023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1035	Open in IMG/M
3300022694\|Ga0222623_10056738	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1509	Open in IMG/M
3300025324\|Ga0209640_10273072	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300025558\|Ga0210139_1014066	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1503	Open in IMG/M
3300025580\|Ga0210138_1153997	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300025905\|Ga0207685_10757898	Not Available	532	Open in IMG/M
3300025918\|Ga0207662_10378059	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	956	Open in IMG/M
3300025922\|Ga0207646_11225805	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300025923\|Ga0207681_11856715	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300025928\|Ga0207700_11728026	Not Available	551	Open in IMG/M
3300026088\|Ga0207641_12079016	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300026296\|Ga0209235_1048108	All Organisms → cellular organisms → Bacteria	2070	Open in IMG/M
3300026297\|Ga0209237_1014718	All Organisms → cellular organisms → Bacteria	4599	Open in IMG/M
3300026313\|Ga0209761_1210945	Not Available	834	Open in IMG/M
3300026351\|Ga0257170_1065057	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300027209\|Ga0209875_1032467	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300027527\|Ga0209684_1036180	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300027654\|Ga0209799_1042857	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	1009	Open in IMG/M
3300027821\|Ga0209811_10094804	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1067	Open in IMG/M
3300027862\|Ga0209701_10061877	All Organisms → cellular organisms → Bacteria	2384	Open in IMG/M
3300027873\|Ga0209814_10256302	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300027880\|Ga0209481_10300505	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300027882\|Ga0209590_10342487	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300028381\|Ga0268264_10595805	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1089	Open in IMG/M
3300028812\|Ga0247825_10809001	Not Available	677	Open in IMG/M
3300030006\|Ga0299907_10877558	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300031198\|Ga0307500_10251379	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300031543\|Ga0318516_10858498	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300031680\|Ga0318574_10327073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	892	Open in IMG/M
3300031744\|Ga0306918_10585126	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	875	Open in IMG/M
3300031770\|Ga0318521_10527772	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	711	Open in IMG/M
3300031793\|Ga0318548_10132318	All Organisms → cellular organisms → Bacteria → Proteobacteria	1210	Open in IMG/M
3300031833\|Ga0310917_10874863	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	605	Open in IMG/M
3300031854\|Ga0310904_10324327	All Organisms → cellular organisms → Bacteria → Proteobacteria	984	Open in IMG/M
3300031997\|Ga0315278_11444784	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300032052\|Ga0318506_10129638	Not Available	1095	Open in IMG/M
3300033433\|Ga0326726_11447295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	669	Open in IMG/M
3300034664\|Ga0314786_167017	Not Available	526	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.34%
Host-Associated	Host-Associated	18.66%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.40%
Plants	Host-Associated → Plants	18.66%
Aquatic	Environmental → Aquatic	11.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.69%
Sediment	Environmental → Aquatic → Sediment	8.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.97%
Freshwater	Environmental → Aquatic → Freshwater	1.49%
Marine	Environmental → Aquatic → Marine	1.49%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.75%
Peat	Environmental → Terrestrial → Peat	0.75%
Cave	Environmental → Terrestrial → Cave	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.75%
Loam	Environmental → Terrestrial → Soil → Loam	14.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.97%
Sand	Environmental → Terrestrial → Soil → Sand	2.99%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.49%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.49%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.75%
Lake	Environmental → Aquatic → Freshwater → Lake	0.75%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.97%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.24%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.49%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.49%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.49%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.75%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.22%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.22%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.99%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.24%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.49%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.49%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.49%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.75%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.75%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.75%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.75%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.75%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.75%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000564	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012174	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT366_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014882	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025558	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_138050092	3300000363	Soil	ARPELVVEIEVAAVKGAGAGIQWIGPDATDPLDA*
RepKanNP_BrdU_F12BDRAFT_10134701	3300000564	Soil	CRIAGLARPELLVEVEVAAVRGARNGIEWIGPDAVDPLDRA*
F14TB_1002942253	3300001431	Soil	SSLGCRIAGLARPELLVEVEVAAVRGARDGIEWIAPEALDPLDRA*
JGI25390J43892_101016631	3300002911	Grasslands Soil	GCRITGLARPELLVEVEVAAVKGAHAGIEWVGPDAADPLDRA*
soilH2_103641861	3300003324	Sugarcane Root And Bulk Soil	CRITGLARPELVVEIEVTAVKGASAGIQSIGPDAVDPLDA*
Ga0066397_100982443	3300004281	Tropical Forest Soil	PASLGCRISGLARPELLVEIEVTAVKGAGVGIEWIGPDAADPLDAS*
Ga0063356_1010667032	3300004463	Arabidopsis Thaliana Rhizosphere	TPFAKSHPASLGCRISGLARPELVVEIEVTAVKGAGANIQWIEPDPVDALDA*
Ga0062592_1011888981	3300004480	Soil	GCRIAGLARPELLVEVEVAAVKGARAGIEWIGPDDVDPLDAAKAR*
Ga0066395_101300553	3300004633	Tropical Forest Soil	KSGPSSLGCRIAGLARPELLVEVEVAAVKGAHANIEWIAPDPVDPLDRT*
Ga0066678_109924822	3300005181	Soil	LGCRIAGLARPGLVVEIEVTAVKGARANIEWIGPDAVDPLDAP*
Ga0066388_1017319981	3300005332	Tropical Forest Soil	CRIAGLARPELLVEVEVAAVKGAHAGIEWVGPDAADPLDRA*
Ga0070713_1021687401	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LGCRISGLARPELLVEIEVTAVKGAGAGIEWIGPDAADPLDAS*
Ga0070701_106627211	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	FAKSHPTSLGCRISGLARPELVVEIEVTAVKGAGAEIQWIGPDATDPLDAS*
Ga0070662_1019973931	3300005457	Corn Rhizosphere	HPTSLGCRISGLARPELVVEIEVTAVKGAGTGIQWIGPDATDPLG*
Ga0070693_1014482892	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	HPTSLGCRISGLARPELVVEIEVTAVKGAGAAIQWIGPDATDPLDAS*
Ga0070704_1001747371	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	TPFAKSHPASLGCRISGLARPELIVEIEVTAVKGAGANIQWIEPDPVDALDA*
Ga0066701_105890271	3300005552	Soil	SLGCRIAGLARPELLVEVEVAAVKGAHAGIEWVEADAVDALDRA*
Ga0066704_105453802	3300005557	Soil	PASLGCRIAGLARPELLVEVEVAAVKGAHAGIEWVGPDADDPLDRA*
Ga0068854_1016527992	3300005578	Corn Rhizosphere	SLGCRIAGLARPELLVEVEVTAVKGAHAGIESIGPDATDPLDRG*
Ga0066905_1005712671	3300005713	Tropical Forest Soil	YPASLGCRISGLARPELLVEIEVTAVKGGGAGIEWIGPDATDPLDAS*
Ga0066905_1014091803	3300005713	Tropical Forest Soil	SLGCRIAGLARPELLVEVEVAAVRGARDGIEWIGPDDVDPLDSR*
Ga0068866_111444563	3300005718	Miscanthus Rhizosphere	FAKSHPASLGCRISGLARPELVVEVEVTAVKGAGGGIQWIGPEAVDPLDAS*
Ga0068861_1004776872	3300005719	Switchgrass Rhizosphere	SLGCRISGLARPELVVEIEVTAVKGAGANIQWIEPDPVDALDA*
Ga0066903_1004034716	3300005764	Tropical Forest Soil	ELLVEVEVAAVKGAHAGIEWIGPDAVDPLDAAPR*
Ga0068863_1006780662	3300005841	Switchgrass Rhizosphere	TPFAKSHPASLGCRISGLARPELVVEIEVTAVKGAGANIQWIGPDPVDALDA*
Ga0075417_107247362	3300006049	Populus Rhizosphere	TGLARPELLVEIEVSAVKGAGKEIDSIGPDPTDPVG*
Ga0082029_15233212	3300006169	Termite Nest	ASLGCRIAGLARPELLVEIEVTAVKGAGANIERVGPDPVDPLDA*
Ga0075421_1012703213	3300006845	Populus Rhizosphere	AKSHPTSLGCRISGLARPELVVEIEVTAVKGAGTDIQWIGPDATDPLG*
Ga0075421_1020399342	3300006845	Populus Rhizosphere	GCRIAGLARPELLVEIEVLAVKGAGAGIESIGPDPVDPVDR*
Ga0075431_1006166071	3300006847	Populus Rhizosphere	ASLGCRISGLARPELVVEVEVAAVKGAGAGIQWIGADPVDPLDGR*
Ga0075433_114607281	3300006852	Populus Rhizosphere	ARPELVVEIEVTAVKGAGANIQWIEPDPVDALDA*
Ga0075420_1014378021	3300006853	Populus Rhizosphere	LLASALGCRISGLAQPDLVVEIEATAVKGAGRGIQWIGPDAVDPLDAG*
Ga0075429_1004703953	3300006880	Populus Rhizosphere	VIAQILLASALGCRISGLAQPDLVVEIEATAVKGAGRGIQWIGPDAMDPLDAG*
Ga0075429_1013441951	3300006880	Populus Rhizosphere	PFAKSHPTSLGCRISGLARPELVVEIEVAAVKGAGAGIQWIGPDATDPLDA*
Ga0075436_1009573432	3300006914	Populus Rhizosphere	LARPELLVEVEVAAVRGARDGIEWIAPDAVDPLDRAPAS*
Ga0075436_1010722762	3300006914	Populus Rhizosphere	GSCPSSLGCRIAGLARPELLVEVEVTAVKGAHASIDWIAPDAIDPVDRS*
Ga0075419_114137741	3300006969	Populus Rhizosphere	VIAQILLASALGCRISGLAQPDLVVEIEATAVKGAGRGIQWIGPDAVDPLDAG*
Ga0075435_1016498281	3300007076	Populus Rhizosphere	PASLGCRIAGLARPELLVEIEVTAVKGAHANIEWIGPDATDPLDG*
Ga0066710_1026867571	3300009012	Grasslands Soil	GLARPELLVEVEVAAVKGAHAGIEWIGPDAVDPLDGGGA
Ga0075418_128604502	3300009100	Populus Rhizosphere	GCRISGLARPELVVEVEVTAIKGAGAGIQWIGPDATDPLDT*
Ga0066709_1028445162	3300009137	Grasslands Soil	PGSLGCRIAGLARPELLVEVEVAAVKGAHAGIEWIGPDAVDPLDGSGA*
Ga0114945_107867901	3300009444	Thermal Springs	LGCRIAGLARPELLVEVEVAAVKGARDGIEWIGPDAVDPLDH*
Ga0126374_102532613	3300009792	Tropical Forest Soil	CRISGLARPELLVEIEVTAVKGAGAGIEWIGPDAADPLDAS*
Ga0126374_112235132	3300009792	Tropical Forest Soil	RPELLVEVEVAAVKGAHANIEWIAPDPVDPLDRT*
Ga0105088_10790452	3300009810	Groundwater Sand	SSLGCRIAGLARPELLVEVEVAAVRGARDGIEWIGPDAVDPLDRA*
Ga0105082_10865062	3300009814	Groundwater Sand	PAYFAGSRPTSMDCRIAGLARPELLVEVEITAVKGAGRGIESIGPDPTDPVDR*
Ga0105066_11750332	3300009822	Groundwater Sand	AGLARPELLVEVEVAAVRGARDGIEWIGPDAVDVLDLPSV*
Ga0126382_100416644	3300010047	Tropical Forest Soil	SLGCRISGLARPEFLVEIEVAAVKGAGAGIEWIGADAVDPLDAS*
Ga0126382_104177521	3300010047	Tropical Forest Soil	SCPASLGCRVAALARPELLVEVEVTAIRGAGAAIERIEPEAVDVLDR*
Ga0126373_109951321	3300010048	Tropical Forest Soil	KSYPASLGCRISGLARPELLVEIEVTAVKGAGAGIEWIGPDAADPLDAS*
Ga0134082_101316683	3300010303	Grasslands Soil	FAKSCPASLGCRIAGLARPELLVEVEVAAVKGAHAGIEWVGPDATDPLDR*
Ga0134086_102717141	3300010323	Grasslands Soil	IAGLARPELLVEVEVAAVKGAHAGIEWIAPDAADALDLRPR*
Ga0126370_105561311	3300010358	Tropical Forest Soil	GCRISGLARPELLVEIEVTAVKGAGAGIEWIGPDAADPLDAS*
Ga0126376_104948481	3300010359	Tropical Forest Soil	LARPELLVEVEVAALKGAHAGIEWIGPDAADPLDRA*
Ga0126376_105987232	3300010359	Tropical Forest Soil	CPASLGCRIAGLARPELLVEVEMAAVKGAHASIEWVGPDAADPLDRG*
Ga0126378_103314841	3300010361	Tropical Forest Soil	KSCPTSLGCRIAGLAGPELLVEVEVAAVKGAHGGIEWVAPDPVDPLDRV*
Ga0126377_107994301	3300010362	Tropical Forest Soil	AKSHPASLGCRITGLARPELLVEIEVTAVKGAGANIEWIGPDTTDPLDA*
Ga0126379_102564033	3300010366	Tropical Forest Soil	ARPELLVEIEVTAVKGAGAGIEWIGPDATDPLDAA*
Ga0126379_124565612	3300010366	Tropical Forest Soil	AGLARPELLVEVEVAAVKGAHANIEWIGPDPVDPLDGA*
Ga0126381_1009801091	3300010376	Tropical Forest Soil	KSHPASLGCRISGLARPELLVEIEVTAVKGAGAGIEWIGPDAADPLDAS*
Ga0126381_1023878102	3300010376	Tropical Forest Soil	HPDLLVEVEVAAVKGAHAGIEWVSPDAQDPLDGPST*
Ga0134124_107697512	3300010397	Terrestrial Soil	GCRISGLARPELIVEIEVTAVKGAGANIQWIEPDPVDALDA*
Ga0126383_104327781	3300010398	Tropical Forest Soil	SAPSSLGCRVSGLARPELLVEVEVAAVKGAHAGIEWIGPDAVDPLDAAPR*
Ga0126383_105478753	3300010398	Tropical Forest Soil	PASLGCRISGLARPELLVEIEVTAVKGAGAGIEWIGPDAADPLDAS*
Ga0126383_132135261	3300010398	Tropical Forest Soil	RVAGLARPELLVEVEVAAVKGAHAGIEWVAPDAVDPLDRV*
Ga0134123_104210781	3300010403	Terrestrial Soil	KSHPTSLGCRISGLARPELVVEIEVTAVKGAGTDIQWIGPDATDPLG*
Ga0134123_106005571	3300010403	Terrestrial Soil	ARPELVVEIEVTAVKGAGANIPWIEPDPVDALDA*
Ga0134123_113684852	3300010403	Terrestrial Soil	MGCRIMGLARPELLVEVEVMAVKGAGTGIEAIGPDPVDPVDR*
Ga0137461_10569791	3300012040	Soil	PTSLGCRISGLARSELVVEVEVTAVKGAGAGIQWIGPDATDPLDAD*
Ga0137338_10148191	3300012174	Soil	TGPTARPELLVEVEVAAVKGAGAAIEWIAHDPVDVLDR*
Ga0137399_107191852	3300012203	Vadose Zone Soil	RPELLVEVEVTAVKGAHAGIAWVSPDAVDPLDRI*
Ga0137378_104335311	3300012210	Vadose Zone Soil	LARPELLVEVEVTAVKGAHAGIESIGPDPTDPLDRG*
Ga0137434_10265822	3300012225	Soil	LGCRISGLARSELVVEVEVTAVKGAGAGIQWIGPDATDPLDAD*
Ga0137372_105308341	3300012350	Vadose Zone Soil	AGLARPELLVEVEVAAVKGAHAGIEWIGPDAVDPLDGGGA*
Ga0137375_112074432	3300012360	Vadose Zone Soil	ELLVEVEVAAVKGARAGIEWIGPDEVDPLDAVTGW*
Ga0137358_100346551	3300012582	Vadose Zone Soil	AWFAKSCPASLVCRIAGLARPELLVEVEVTAVKGAHAGIAWVSPDAVDPLDRI*
Ga0137358_102368194	3300012582	Vadose Zone Soil	CRIAGLARPELLVEVEVAAVKNAHAGIEWVGPDAADPLDRA*
Ga0137358_108124071	3300012582	Vadose Zone Soil	PTSLGCRISGLARPELLVEVEVTAVKGAGAGIQWIAPDAVDPLDD*
Ga0137394_101381211	3300012922	Vadose Zone Soil	GCRISGLARPELVVEVEVTAVKGAGGGIQWIGPDAVDPLDAS*
Ga0137404_100847013	3300012929	Vadose Zone Soil	IAGLARPELLVEVEVTAVKGAHAGIAWVSPDAVDPLDRI*
Ga0126369_121852392	3300012971	Tropical Forest Soil	CRVAALARPELLVEVEALAIKGARVDIEQVAPDVIDPLDAR*
Ga0163162_101412611	3300013306	Switchgrass Rhizosphere	CRISGLARPELVVEVEVTAVKGAGGGIQWIGPDAVDPLDAS*
Ga0180069_10909551	3300014882	Soil	SHPTSLGCRISGLARSELVGEVEVTAVKGAGAGIQWIGPDATDPLDAD*
Ga0180104_10894111	3300014884	Soil	TSLGCRIAGLARPELLVEVEVAALKGAGANIEWIAPDEVDPLDER*
Ga0137405_10097841	3300015053	Vadose Zone Soil	AGLARPELLVEVEVTAVKGAHAGIAWVSPDAVDPLDRI*
Ga0180085_12507461	3300015259	Soil	TARPELLVEVEVAAVKGAGAAIEWIAPDPVDVLDR*
Ga0134089_101710972	3300015358	Grasslands Soil	RPELLVEVEVAAVKGAHAGIEWVEADAVDALDRA*
Ga0134085_104090832	3300015359	Grasslands Soil	RPDLLLEVEVAAVRGARDGIEWVGPDAVDPLDRPRTG*
Ga0134112_103583941	3300017656	Grasslands Soil	VSLGCRIAGLARPELLVEVEVAAVKGAHAGIEWIGPDAVDPLDGGGA
Ga0184612_101480541	3300018078	Groundwater Sediment	TSLGCRISGLARSELVVEVEVTAVKGAGAGIQWIGPDATDPLDAD
Ga0184612_106106341	3300018078	Groundwater Sediment	GCRISGLARPELVVEVEVTAVKGAGAGIQWIGPDVADPLDGADPLDGA
Ga0184627_101355671	3300018079	Groundwater Sediment	SHPTSLGCRISGLARPELVVEVEVTAIKGAGAGIQWIGPDAADPLDGA
Ga0190265_114950842	3300018422	Soil	SLGCRISGLARPELVVEVEVTAVRGAGTGIQWIGPDAVDPLDAH
Ga0066655_109546351	3300018431	Grasslands Soil	KSCHASLGCRIAGLARPELLVEVEVAAVKGAHAGIEWVGPDADDPLDRA
Ga0187892_100655745	3300019458	Bio-Ooze	LARSELVVEVEVTAVKGAGAGIQWIGPDATDPLDAD
Ga0210379_104530471	3300021081	Groundwater Sediment	PASLGCRIAGLARPELVVEVEVTAVKGAGAAIESIGPDPVDPLDAATAGGR
Ga0224452_10730231	3300022534	Groundwater Sediment	ISGLARPELVVEVEVTAVKGAGAGIQWIGPDVADPLDGA
Ga0222623_100567383	3300022694	Groundwater Sediment	GLARPELVVEVEVTAVKGAGAGIQWIGPDVADPLDGA
Ga0209640_102730723	3300025324	Soil	GCRISGLARPELVVEIEVSAVKGAGAGIQWIGPDPTDPLDAA
Ga0210139_10140662	3300025558	Natural And Restored Wetlands	ISGLARPELLVEVEVTAIKGAHAAIERVGPDVRDPLDA
Ga0210138_11539971	3300025580	Natural And Restored Wetlands	GCRISGLARPELLVEVEVTAVKGAGAGIEWLGPDAVDPLDAS
Ga0207685_107578981	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	SLGCRISGLARPELLVEIEVTAVKGAGAGIEWIGPDAADPLDAS
Ga0207662_103780591	3300025918	Switchgrass Rhizosphere	PFAKSHPASLGCRISGLARPELIVEIEVTAVKGAGANIQWIEPDPVDALDA
Ga0207646_112258051	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RPELLVEVEVAAVKGARAGIEWIGPDEVDPLDAATAR
Ga0207681_118567153	3300025923	Switchgrass Rhizosphere	AKSHPTSLGCRISGLARPELVVEVEVTAVKGAGGGIQWIGPDAVDPLDAS
Ga0207700_117280261	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RPASLGCRISGLARPELLVEIEVTAVKGAGAGIEWIGPDAADPLDAS
Ga0207641_120790161	3300026088	Switchgrass Rhizosphere	LGCRIAGLARPELLVEVEVAAVKGARAGIEWIGPDDVDPLDAASGR
Ga0209235_10481083	3300026296	Grasslands Soil	GCRIAGLARPELLVEVEVAAVKGAHAGIEWVAPDAVDALDLRPG
Ga0209237_10147188	3300026297	Grasslands Soil	GCRIAGLARPELLVEVEVAAVKGAHAGIEWVGPDADDPLDRA
Ga0209761_12109451	3300026313	Grasslands Soil	SCPASLGCRIAGLARPELLVEVEVAAVKGAHAGIEWVGPDADDPLDRA
Ga0257170_10650572	3300026351	Soil	CRISGLARSELVVEVEVTAVKGAGAGIQWIGPDATDPLDAD
Ga0209875_10324672	3300027209	Groundwater Sand	AGLARPELLVEVEVAAVRGARDGIEWVEADAVDALDRA
Ga0209684_10361802	3300027527	Tropical Forest Soil	KSHPASLGCRISGLARPELLVEVEVSAVKGAGAGIEWIGPDAADPLDAS
Ga0209799_10428571	3300027654	Tropical Forest Soil	ARPELLVEIEVAAVKGAGVGIEWIGPDAADPLDAS
Ga0209811_100948041	3300027821	Surface Soil	WFAKSCPSSLGCRIAGLARPELVVEVEVTAVKGAHAGIESIGPDATDPLDRG
Ga0209701_100618775	3300027862	Vadose Zone Soil	SLGCRISGLARSELVVEVEVTAVKGAGAGIQWIGPDATDPLDAD
Ga0209814_102563022	3300027873	Populus Rhizosphere	PELLVEVEVAAVRGARDGIEWIAPDAVDPLDRAPAT
Ga0209481_103005053	3300027880	Populus Rhizosphere	GLARPELVVEVEVTAVKGAGAGIQWIGPDETDPLDAR
Ga0209590_103424873	3300027882	Vadose Zone Soil	HHELLVEVEVAALKGAHANIEWIGPDAVDPLDRSAV
Ga0268264_105958053	3300028381	Switchgrass Rhizosphere	PSSLGCRIAGLARPELLVEVEVAAVKGARAGIEWIGPDDVDPLDAATAR
Ga0247825_108090012	3300028812	Soil	TSLGCRISGLAQPELVVEVEVTAVKGAGGGIQWIGPDAVDPLDAS
Ga0299907_108775582	3300030006	Soil	GAEVNRPYGQGPAWFAGSRPAALGCRIAALARPELLVEIEVAAVKGAGAGIERIGPDELDPVDRMR
Ga0307500_102513792	3300031198	Soil	ASLGCRITGLARPELVVEIEVTAVKGAGANIQWIAPDPVDALDA
Ga0318516_108584981	3300031543	Soil	SCPASLGCRIAGLTRPELLVEVEVAAVKGAHAGIEWVGPDAADPLDRA
Ga0318574_103270731	3300031680	Soil	RIAGLARPELLVEVEVAAVKGAHANIEWVAADPVDPLDRT
Ga0306918_105851261	3300031744	Soil	CRIAGLARPELLVEVEVAAVKGAHAGIEWVGPDAADPLDRA
Ga0318521_105277721	3300031770	Soil	LARPELLVEVEVAAVKGAHANIEWVAADPVDPLDRT
Ga0318548_101323181	3300031793	Soil	GLTRPELLVEVEVAAVKGAHAGIEWVGPDAADPLDRA
Ga0310917_108748631	3300031833	Soil	GPSSLGCRIAGLARPELLVEVEVAAVKGAHANIEWVAADPVDPLDRT
Ga0310904_103243271	3300031854	Soil	SRRILLASALGCRISGLAQPDLVVEIEVTAVKGAGSGIQWIGPDTVDPLDAG
Ga0315278_114447841	3300031997	Sediment	ARPELLVEIEVAAVKGARAGIEWIGPDEVDPLDAAPAR
Ga0318506_101296381	3300032052	Soil	SGLARPELLVEIEVTAVKGAGAGIEWIGPDATDPLDAS
Ga0326726_114472952	3300033433	Peat Soil	WFAASCPTSLGCRVSGLARPELLVEVEVAAIKGAGAGIEWIAPDPVDPLDAA
Ga0314786_167017_1_141	3300034664	Soil	PTSLGCRISGLAQPELVVEVEVTAVKGAGGGIQWIGPDAVDPLDAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059321

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences