NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2088090003

2088090003: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN



Overview

Basic Information
IMG/M Taxon OID2088090003 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046224 | Gp0052033 | Ga0011122
Sample NameQuercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI), Lifesequencing S.L.
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size158961149
Sequencing Scaffolds35
Novel Protein Genes41
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium6
Not Available9
All Organisms → cellular organisms → Bacteria → Acidobacteria5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC286501
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P171
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameQuercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain
TypeHost-Associated
TaxonomyHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomerhizospheresoil
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant rhizosphere

Location Information
LocationSierra Nevada National Park, Granada, Spain
CoordinatesLat. (o)36.96971Long. (o)-3.46027Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000150Metagenome / Metatranscriptome1910Y
F000249Metagenome / Metatranscriptome1459Y
F001103Metagenome / Metatranscriptome777Y
F001426Metagenome / Metatranscriptome697Y
F002314Metagenome / Metatranscriptome572Y
F003651Metagenome475Y
F004013Metagenome / Metatranscriptome457Y
F007347Metagenome / Metatranscriptome353Y
F018261Metagenome / Metatranscriptome236Y
F023752Metagenome / Metatranscriptome209N
F024842Metagenome / Metatranscriptome204Y
F025159Metagenome / Metatranscriptome203Y
F028250Metagenome / Metatranscriptome192Y
F029856Metagenome / Metatranscriptome187Y
F033537Metagenome177Y
F036366Metagenome / Metatranscriptome170Y
F037003Metagenome168Y
F038739Metagenome / Metatranscriptome165Y
F039575Metagenome / Metatranscriptome163Y
F042040Metagenome / Metatranscriptome159Y
F043319Metagenome156Y
F052058Metagenome / Metatranscriptome143Y
F055058Metagenome / Metatranscriptome139Y
F059012Metagenome / Metatranscriptome134Y
F062936Metagenome / Metatranscriptome130Y
F065049Metagenome128Y
F066706Metagenome / Metatranscriptome126Y
F068500Metagenome / Metatranscriptome124Y
F068502Metagenome124Y
F071448Metagenome / Metatranscriptome122Y
F080965Metagenome / Metatranscriptome114Y
F081655Metagenome / Metatranscriptome114Y
F084784Metagenome / Metatranscriptome112Y
F085994Metagenome / Metatranscriptome111Y
F086199Metagenome / Metatranscriptome111Y
F089460Metagenome / Metatranscriptome109Y
F095437Metagenome / Metatranscriptome105Y
F100759Metagenome / Metatranscriptome102Y
F101553Metagenome / Metatranscriptome102Y
F103624Metagenome / Metatranscriptome101Y
F105273Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
LJN_F6ESG4R02FMQOQAll Organisms → cellular organisms → Bacteria511Open in IMG/M
LJN_F6ESG4R02FZD1UAll Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium502Open in IMG/M
LJN_F6ESG4R02HD8IYAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium519Open in IMG/M
LJN_F6ESG4R02HM7Q9Not Available505Open in IMG/M
LJN_F6ESG4R02IJHNUAll Organisms → cellular organisms → Bacteria → Acidobacteria505Open in IMG/M
LJN_F6ESG4R02JX9I6Not Available501Open in IMG/M
LJN_F7QKVOU01A36RDAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium506Open in IMG/M
LJN_F7QKVOU01AK1FWNot Available510Open in IMG/M
LJN_F7QKVOU01ALGFPAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium513Open in IMG/M
LJN_F7QKVOU01ALWOSAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650502Open in IMG/M
LJN_F7QKVOU01ALZFAAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium509Open in IMG/M
LJN_F7QKVOU01AMBGOAll Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium531Open in IMG/M
LJN_F7QKVOU01AU4ENAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia522Open in IMG/M
LJN_F7QKVOU01B56NHAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli540Open in IMG/M
LJN_F7QKVOU01BALS3All Organisms → cellular organisms → Bacteria → Acidobacteria514Open in IMG/M
LJN_F7QKVOU01BFVE0All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium530Open in IMG/M
LJN_F7QKVOU01BLRQKAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium506Open in IMG/M
LJN_F7QKVOU01C7D9WAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia515Open in IMG/M
LJN_F7QKVOU01CAQZFAll Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria505Open in IMG/M
LJN_F7QKVOU01CHX2VNot Available504Open in IMG/M
LJN_F7QKVOU01CKHJTAll Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii501Open in IMG/M
LJN_F7QKVOU01CUIZCNot Available505Open in IMG/M
LJN_F7QKVOU01CXALTAll Organisms → cellular organisms → Bacteria513Open in IMG/M
LJN_F7QKVOU01CXJR8Not Available505Open in IMG/M
LJN_F7QKVOU01D0GI5All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17511Open in IMG/M
LJN_F7QKVOU01D8AADAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria508Open in IMG/M
LJN_F7QKVOU01DAELTNot Available515Open in IMG/M
LJN_F7QKVOU01DFODBAll Organisms → cellular organisms → Bacteria → Acidobacteria508Open in IMG/M
LJN_F7QKVOU01DIU4BAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia504Open in IMG/M
LJN_F7QKVOU01DNOJAAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M
LJN_F7QKVOU01DOQIENot Available504Open in IMG/M
LJN_F7QKVOU01DT6CEAll Organisms → cellular organisms → Bacteria → Acidobacteria544Open in IMG/M
LJN_F7QKVOU01EA3K7Not Available517Open in IMG/M
LJN_F7QKVOU01EBMPIAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium523Open in IMG/M
LJN_F7QKVOU01EK6JMAll Organisms → cellular organisms → Bacteria → Acidobacteria508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
LJN_F6ESG4R02FMQOQLJN_00887650F024842MQKNDLFLIESDGFRNRLFLNGQGVGTFSTLDAAEAEAEKVANRTVPGASLKFELDFKWTLSDLEIRAATLERVSAEA
LJN_F6ESG4R02FZD1ULJN_01720340F080965APGAAVRLSPAALLTVADVHRRFVEHVLAANPGAAFRAACGYPIEKKLKSLKAPLTVFAPHDDIIEQTLRVKPLLKPSATYVDLPELGQDPFHVSLDRMVALVNRHLP
LJN_F6ESG4R02HD8IYLJN_02439660F038739PAGSVVLQKVGDDTIRVLNPANRTWYEIPANQNLGTLLGTPDVTIEPANEKATIAGQRAERFRFKERLQVPVPEGVSLPADFPREIELDGDLWSTDAFAGGGYATVFRTLQAFAAIPGVEALTSGGRFPLRIALRSSIMPGYEIRSEVTAIGPAPADAALFTIPSGYQKVLPP
LJN_F6ESG4R02HM7Q9LJN_00519230F037003MVKGEIKEYVITDKITETVEVKRNYLSILATYYLQITLLIERAYKDIL
LJN_F6ESG4R02IJHNULJN_03850540F018261MMKGSEVELVLILPPELTSGEKCWVCCQARVVRVEQGPDKSFGVAAEIERMDILPEIPA
LJN_F6ESG4R02JX9I6LJN_03964860F036366ATTKSASDAKVKHTYQYAPNESVAASFTATTFFSHDLAPPAGAKPATGAANVSK
LJN_F7QKVOU01A36RDLJN_03307730F004013KDSGPQLRLEFAKSVLDKNFAELAQKSEEMAGIVLIFDSVDGGMIAATLPTLQEWKAGKLSDAALWHQCFF
LJN_F7QKVOU01AK1FWLJN_04156750F001426MRQMSSWTPQKLYDAEPWVFLVVGALLGIGMMLMSLWAGLWTVWRGLLCLGGAGLAIVGGATLQMRQDYRAKSKWRRDA
LJN_F7QKVOU01ALGFPLJN_00168230F023752LFNLLILISVELGARSAVKLFFPNKEVSLARRAAWTYDELRKLTGHPFLQFQGIPSTTGNQVLGWYFSNLNSRQLEGVDSFKASTGNLSIFNNFGFIGRDFAYAKPPGVIRIAALGASTTADGYPAMLEEYLNARVAAQSNRFEVMNFGHGYWTSAHVLVNFVLNVIDFA
LJN_F7QKVOU01ALWOSLJN_03754080F084784MSSKSGGPVRLTYDPTADSGQGAIVANSGTLLGGLNTVGFFADSAGNFKNSSVTLGPCDATIVGPCTALYLAFERSQKIERINFVDQPVAAQSIETISKNADKRKGVRFGIGDFRNANGTDDLYIDELGGNGVSMLSDVAHCAPSEGSPDPTVTQPRGEPGRRCGAT
LJN_F7QKVOU01ALZFALJN_02176440F055058VHSFPTSLAAARVEVEGKAWLDAQKDPPAMNVNGGWDSDEWGLFHLTQAEGSREVSGNGGGYEIVGVVSGKRLFLLFSEKHTVEYCATLSPNRENSLAGTYSNRKSRLHSGLCQESSRPMNMTRK
LJN_F7QKVOU01AM6HELJN_01526730F000150MPITPYLDDFDVDPETKRVLDVALKMTRVSLGLGDNFADGIIAKRIVELAKAGERNPDLLSEGSLEKLRGHLYGD
LJN_F7QKVOU01AMBGOLJN_02422000F043319MSKINEIIVASVLPAIKAVGKVEMENVLSGIKAHNTPEIYQNTLQGLHSNFFLLKEAALKTRTGIDDGIIDLVLEAVKDSANADGIVLVN
LJN_F7QKVOU01AU4ENLJN_00333950F095437MTLHWTKEDDPRWNADKQRLFGPEDLAAVDLDPPAAGTPV
LJN_F7QKVOU01B56NHLJN_01658320F068502FEAWSNRRGPDALRPLLAEAFVFDAGPVHIEGREAFLGAAGWPARATTTMIAEAYDGDHGFQLYAAVNGTARIRSAECLVVRDGVVVSSEIIGDLAAFQVFMAAG
LJN_F7QKVOU01BALS3LJN_02360920F089460QLAYAASQKGDYGSAATLAVILERTWDKAEDYGGDTALSKTNHALFDQIDKAMDSFIAVFLDHPTSAPDAAKLKAAYALYLEKLKLAD
LJN_F7QKVOU01BFVE0LJN_02096880F000249MESEERMFFPRDTFWGWAQLDLAPPHNEIDPNLCAGNAGQFGGVNAPCSLFARYMLSGMLEVRPFGRGQLRRFMVFGAPAFLFGKTVPKTLYTWSPDAIGIEHSWGIGIFIAKGFEFRVTQHFLFDRLGARNTNLGPADLGNNR
LJN_F7QKVOU01BLRQKLJN_03885210F003651MESRRPLLDVIELKEWCYFPNDFRPTEIHVRVAVHDSGRFAGNVTGEETDPSGSSQTVFESTNEPENQRQVRSGETFTHIFPLKVLYAAHADNVRITLYLFKGAPSGPAVGDIAKVFIAVAARKVM
LJN_F7QKVOU01C7D9WLJN_02676700F100759AIGQSLNLSTKTITAPQSGRQQFYRLRATTALTITNITVSGGNVVIKYD
LJN_F7QKVOU01CAQZFLJN_00765090F001103MAQVITRCRLTGHYMFMGIDADPKQFTGSSGPFARKFCPFCASDHLWHKEDSKFLAPKTMVGPHIQRAS
LJN_F7QKVOU01CAWO3LJN_00737350F105273MILIMVTAGFFSSGQSSTDSVYTGTLDSVKAEVVIDRETKGLTKAGLAKAIGTGTIYNSTSPYHNDLHEFTYLVAMRDFCNKTLLEMRTNGEANKKRSKELKRELSNAKAKIKFFKI
LJN_F7QKVOU01CHX2VLJN_00870650F007347AEFNGILPIEAREKARAAKDHFDNLYLIVDQQHRWKSVFLPDPRPRVLDPLLVGELKQSRASKYYLIHQFDLTEAEQYLANEFAIKLG
LJN_F7QKVOU01CKHJTLJN_01720380F101553MEGSVKADKGQFDEVLKRMLAREPQRTTDIKAPKKVPVPQKSVKQK
LJN_F7QKVOU01CUIZCLJN_01887030F086199YALVGSQHRPGQHGPLTGIHVILSNGAGDTERQHREAQILQTGLFYSAARFRIIEGSPNPAEWLEVFETGDPDPLHAYPRAAGHTFPAPQIHLQLSQSFRLAGAPRAAAHVPEGRLAGR
LJN_F7QKVOU01CXALTLJN_02088450F028250MNQPNQVQEKALKPPGLLPKNVQSWLLISLALLMVLIM
LJN_F7QKVOU01CXJR8LJN_03990840F033537MDTTQHDEGDVRPGDLLVGANAIRAFLVSLGMPEKTAEPYYLKRSGWPIGNTAKGGGKLIASKRRLSSHTSKIARGSSAA
LJN_F7QKVOU01D0GI5LJN_03157490F025159VGQVVWADSGEREYGIELYRPENFWGIYFPPEDWELGVPAVTVVSAAAASGASQTRVAMKEEPSEPSTETQALQIPEGGTIAILRGIASNGVPFQERDLILPVGERDATMLIGPMVGLGSTLQVIFSKNCVEDALVTATSHSREYDRWRIWLNFSRVLLVAKG
LJN_F7QKVOU01D4HKVLJN_01247990F059012DHVVLVGTGITIKNADDPLAEAVVQSFQSQIHSAFQHTGDNVLFAKLPARHLTADELAGYSRTAPVLLVQLEAKSKELAVLYGYLGPVNAFGSMTAD
LJN_F7QKVOU01D8AADLJN_02448650F085994QTKWTGPSMNYAVDPNAPRGSAKVVNGTGEKGFDVSVDRTVYDASGKELRHDTFRSHYIPDSPTTVYGPGRTPPGPYIVLPTHF
LJN_F7QKVOU01DAELTLJN_01465660F042040PGLGQVVRCRSCDSVLMVFIEARGLICVDLSGLASLG
LJN_F7QKVOU01DFODBLJN_00659570F002314TVAELNMGGGIGSSDRHLAPGSLLSLKFSHGVRSIRAQAIVRGARPQAMAFEFVDMELDERSRLRKLLLELGGLPQPSNVVNRTKRTGRIALMK
LJN_F7QKVOU01DIU4BLJN_03973350F039575TDDPIRALLASIDPTPFIWVPKGNVVIMQTAVEEAGGDPDEVTAWVEAHGGELDRTLPVVATRRGVTSVPKPVGKKYYVVPESALAG
LJN_F7QKVOU01DNOJALJN_02282320F081655MGVTIELQNLGDAQLEHALSGRQGEWRVSIAGSRAAENWDLRVDGPNGFERSYALGCRR
LJN_F7QKVOU01DOQIELJN_03649110F068500VSTPETAALSRRTLATITAAARTIYSYDASLDDLCARATEQLDEAAREEFAALRTDADAVMVVARGQLRDLR
LJN_F7QKVOU01DT6CELJN_01010270F062936MASYAQFLGRKVTVQYRVGDVLLPASGTFAADSGRSIFLEQHVEQRGKRSYFRWEIPYQYIHRIEEAEETPEPPAASKTVPIE
LJN_F7QKVOU01EA3K7LJN_01465590F029856AAWADGYATAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPVEQVEKFKPYSTASLYAFAREGFLSTSEKRGPA
LJN_F7QKVOU01EBMPILJN_02483720F052058VATKFVGDAYLNRKQRSARLNFIFARNHQIRGALEGITPLAHPSKNQQSIRVIREEVERIEWALKEILPG
LJN_F7QKVOU01EJ2ONLJN_02001230F065049RKSEEYLECAFRSPNDHEVVPQVLRLEVAGFGTPAIHAQKREDGSWAASFRLPPALDAGWHPVRLRFADTGFSNELRIAVDVPVERPSQVVVQDIYDGRSWNRSEVRIDDGGFVSFWVSGLPENRSALDVRALLGGIPLQITWLGPDEKSGCCQLNAKVPPDLAKGLH
LJN_F7QKVOU01EK6JMLJN_01379120F103624MLLAVSLLASSATAQSDSNPKWDLFVGYQWLHPGGTVPAPFGDPNNPIAFKVPDMAKGFGSALTYNFDPHWGVEFDLGHNWGDSNYETTGSVGPRFIWRTDSANYFLHTLVSL
LJN_F7QKVOU01EKK59LJN_02176720F071448DAYAPNMFEELRERSLVYAATAPADPLTGDSSRKEEGAAAQTESRTERKTIITLALLGSDAGLYGAARVAVTAR
LJN_F7QKVOU01ES684LJN_02457660F066706DQSKGKLISFSVKMISKDNYQVQLPEQLEAGEYGFVWVKNMELKEFTVFAFGVDWKNSD

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