Basic Information | |
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IMG/M Taxon OID | 2088090003 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046224 | Gp0052033 | Ga0011122 |
Sample Name | Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI), Lifesequencing S.L. |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 158961149 |
Sequencing Scaffolds | 35 |
Novel Protein Genes | 41 |
Associated Families | 41 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 6 |
Not Available | 9 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 5 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650 | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17 | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain |
Type | Host-Associated |
Taxonomy | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → rhizosphere → soil |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere |
Location Information | ||||||||
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Location | Sierra Nevada National Park, Granada, Spain | |||||||
Coordinates | Lat. (o) | 36.96971 | Long. (o) | -3.46027 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000150 | Metagenome / Metatranscriptome | 1910 | Y |
F000249 | Metagenome / Metatranscriptome | 1459 | Y |
F001103 | Metagenome / Metatranscriptome | 777 | Y |
F001426 | Metagenome / Metatranscriptome | 697 | Y |
F002314 | Metagenome / Metatranscriptome | 572 | Y |
F003651 | Metagenome | 475 | Y |
F004013 | Metagenome / Metatranscriptome | 457 | Y |
F007347 | Metagenome / Metatranscriptome | 353 | Y |
F018261 | Metagenome / Metatranscriptome | 236 | Y |
F023752 | Metagenome / Metatranscriptome | 209 | N |
F024842 | Metagenome / Metatranscriptome | 204 | Y |
F025159 | Metagenome / Metatranscriptome | 203 | Y |
F028250 | Metagenome / Metatranscriptome | 192 | Y |
F029856 | Metagenome / Metatranscriptome | 187 | Y |
F033537 | Metagenome | 177 | Y |
F036366 | Metagenome / Metatranscriptome | 170 | Y |
F037003 | Metagenome | 168 | Y |
F038739 | Metagenome / Metatranscriptome | 165 | Y |
F039575 | Metagenome / Metatranscriptome | 163 | Y |
F042040 | Metagenome / Metatranscriptome | 159 | Y |
F043319 | Metagenome | 156 | Y |
F052058 | Metagenome / Metatranscriptome | 143 | Y |
F055058 | Metagenome / Metatranscriptome | 139 | Y |
F059012 | Metagenome / Metatranscriptome | 134 | Y |
F062936 | Metagenome / Metatranscriptome | 130 | Y |
F065049 | Metagenome | 128 | Y |
F066706 | Metagenome / Metatranscriptome | 126 | Y |
F068500 | Metagenome / Metatranscriptome | 124 | Y |
F068502 | Metagenome | 124 | Y |
F071448 | Metagenome / Metatranscriptome | 122 | Y |
F080965 | Metagenome / Metatranscriptome | 114 | Y |
F081655 | Metagenome / Metatranscriptome | 114 | Y |
F084784 | Metagenome / Metatranscriptome | 112 | Y |
F085994 | Metagenome / Metatranscriptome | 111 | Y |
F086199 | Metagenome / Metatranscriptome | 111 | Y |
F089460 | Metagenome / Metatranscriptome | 109 | Y |
F095437 | Metagenome / Metatranscriptome | 105 | Y |
F100759 | Metagenome / Metatranscriptome | 102 | Y |
F101553 | Metagenome / Metatranscriptome | 102 | Y |
F103624 | Metagenome / Metatranscriptome | 101 | Y |
F105273 | Metagenome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
LJN_F6ESG4R02FMQOQ | All Organisms → cellular organisms → Bacteria | 511 | Open in IMG/M |
LJN_F6ESG4R02FZD1U | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 502 | Open in IMG/M |
LJN_F6ESG4R02HD8IY | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 519 | Open in IMG/M |
LJN_F6ESG4R02HM7Q9 | Not Available | 505 | Open in IMG/M |
LJN_F6ESG4R02IJHNU | All Organisms → cellular organisms → Bacteria → Acidobacteria | 505 | Open in IMG/M |
LJN_F6ESG4R02JX9I6 | Not Available | 501 | Open in IMG/M |
LJN_F7QKVOU01A36RD | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 506 | Open in IMG/M |
LJN_F7QKVOU01AK1FW | Not Available | 510 | Open in IMG/M |
LJN_F7QKVOU01ALGFP | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 513 | Open in IMG/M |
LJN_F7QKVOU01ALWOS | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650 | 502 | Open in IMG/M |
LJN_F7QKVOU01ALZFA | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 509 | Open in IMG/M |
LJN_F7QKVOU01AMBGO | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 531 | Open in IMG/M |
LJN_F7QKVOU01AU4EN | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 522 | Open in IMG/M |
LJN_F7QKVOU01B56NH | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli | 540 | Open in IMG/M |
LJN_F7QKVOU01BALS3 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 514 | Open in IMG/M |
LJN_F7QKVOU01BFVE0 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 530 | Open in IMG/M |
LJN_F7QKVOU01BLRQK | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 506 | Open in IMG/M |
LJN_F7QKVOU01C7D9W | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 515 | Open in IMG/M |
LJN_F7QKVOU01CAQZF | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 505 | Open in IMG/M |
LJN_F7QKVOU01CHX2V | Not Available | 504 | Open in IMG/M |
LJN_F7QKVOU01CKHJT | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii | 501 | Open in IMG/M |
LJN_F7QKVOU01CUIZC | Not Available | 505 | Open in IMG/M |
LJN_F7QKVOU01CXALT | All Organisms → cellular organisms → Bacteria | 513 | Open in IMG/M |
LJN_F7QKVOU01CXJR8 | Not Available | 505 | Open in IMG/M |
LJN_F7QKVOU01D0GI5 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17 | 511 | Open in IMG/M |
LJN_F7QKVOU01D8AAD | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 508 | Open in IMG/M |
LJN_F7QKVOU01DAELT | Not Available | 515 | Open in IMG/M |
LJN_F7QKVOU01DFODB | All Organisms → cellular organisms → Bacteria → Acidobacteria | 508 | Open in IMG/M |
LJN_F7QKVOU01DIU4B | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 504 | Open in IMG/M |
LJN_F7QKVOU01DNOJA | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 503 | Open in IMG/M |
LJN_F7QKVOU01DOQIE | Not Available | 504 | Open in IMG/M |
LJN_F7QKVOU01DT6CE | All Organisms → cellular organisms → Bacteria → Acidobacteria | 544 | Open in IMG/M |
LJN_F7QKVOU01EA3K7 | Not Available | 517 | Open in IMG/M |
LJN_F7QKVOU01EBMPI | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 523 | Open in IMG/M |
LJN_F7QKVOU01EK6JM | All Organisms → cellular organisms → Bacteria → Acidobacteria | 508 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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LJN_F6ESG4R02FMQOQ | LJN_00887650 | F024842 | MQKNDLFLIESDGFRNRLFLNGQGVGTFSTLDAAEAEAEKVANRTVPGASLKFELDFKWTLSDLEIRAATLERVSAEA |
LJN_F6ESG4R02FZD1U | LJN_01720340 | F080965 | APGAAVRLSPAALLTVADVHRRFVEHVLAANPGAAFRAACGYPIEKKLKSLKAPLTVFAPHDDIIEQTLRVKPLLKPSATYVDLPELGQDPFHVSLDRMVALVNRHLP |
LJN_F6ESG4R02HD8IY | LJN_02439660 | F038739 | PAGSVVLQKVGDDTIRVLNPANRTWYEIPANQNLGTLLGTPDVTIEPANEKATIAGQRAERFRFKERLQVPVPEGVSLPADFPREIELDGDLWSTDAFAGGGYATVFRTLQAFAAIPGVEALTSGGRFPLRIALRSSIMPGYEIRSEVTAIGPAPADAALFTIPSGYQKVLPP |
LJN_F6ESG4R02HM7Q9 | LJN_00519230 | F037003 | MVKGEIKEYVITDKITETVEVKRNYLSILATYYLQITLLIERAYKDIL |
LJN_F6ESG4R02IJHNU | LJN_03850540 | F018261 | MMKGSEVELVLILPPELTSGEKCWVCCQARVVRVEQGPDKSFGVAAEIERMDILPEIPA |
LJN_F6ESG4R02JX9I6 | LJN_03964860 | F036366 | ATTKSASDAKVKHTYQYAPNESVAASFTATTFFSHDLAPPAGAKPATGAANVSK |
LJN_F7QKVOU01A36RD | LJN_03307730 | F004013 | KDSGPQLRLEFAKSVLDKNFAELAQKSEEMAGIVLIFDSVDGGMIAATLPTLQEWKAGKLSDAALWHQCFF |
LJN_F7QKVOU01AK1FW | LJN_04156750 | F001426 | MRQMSSWTPQKLYDAEPWVFLVVGALLGIGMMLMSLWAGLWTVWRGLLCLGGAGLAIVGGATLQMRQDYRAKSKWRRDA |
LJN_F7QKVOU01ALGFP | LJN_00168230 | F023752 | LFNLLILISVELGARSAVKLFFPNKEVSLARRAAWTYDELRKLTGHPFLQFQGIPSTTGNQVLGWYFSNLNSRQLEGVDSFKASTGNLSIFNNFGFIGRDFAYAKPPGVIRIAALGASTTADGYPAMLEEYLNARVAAQSNRFEVMNFGHGYWTSAHVLVNFVLNVIDFA |
LJN_F7QKVOU01ALWOS | LJN_03754080 | F084784 | MSSKSGGPVRLTYDPTADSGQGAIVANSGTLLGGLNTVGFFADSAGNFKNSSVTLGPCDATIVGPCTALYLAFERSQKIERINFVDQPVAAQSIETISKNADKRKGVRFGIGDFRNANGTDDLYIDELGGNGVSMLSDVAHCAPSEGSPDPTVTQPRGEPGRRCGAT |
LJN_F7QKVOU01ALZFA | LJN_02176440 | F055058 | VHSFPTSLAAARVEVEGKAWLDAQKDPPAMNVNGGWDSDEWGLFHLTQAEGSREVSGNGGGYEIVGVVSGKRLFLLFSEKHTVEYCATLSPNRENSLAGTYSNRKSRLHSGLCQESSRPMNMTRK |
LJN_F7QKVOU01AM6HE | LJN_01526730 | F000150 | MPITPYLDDFDVDPETKRVLDVALKMTRVSLGLGDNFADGIIAKRIVELAKAGERNPDLLSEGSLEKLRGHLYGD |
LJN_F7QKVOU01AMBGO | LJN_02422000 | F043319 | MSKINEIIVASVLPAIKAVGKVEMENVLSGIKAHNTPEIYQNTLQGLHSNFFLLKEAALKTRTGIDDGIIDLVLEAVKDSANADGIVLVN |
LJN_F7QKVOU01AU4EN | LJN_00333950 | F095437 | MTLHWTKEDDPRWNADKQRLFGPEDLAAVDLDPPAAGTPV |
LJN_F7QKVOU01B56NH | LJN_01658320 | F068502 | FEAWSNRRGPDALRPLLAEAFVFDAGPVHIEGREAFLGAAGWPARATTTMIAEAYDGDHGFQLYAAVNGTARIRSAECLVVRDGVVVSSEIIGDLAAFQVFMAAG |
LJN_F7QKVOU01BALS3 | LJN_02360920 | F089460 | QLAYAASQKGDYGSAATLAVILERTWDKAEDYGGDTALSKTNHALFDQIDKAMDSFIAVFLDHPTSAPDAAKLKAAYALYLEKLKLAD |
LJN_F7QKVOU01BFVE0 | LJN_02096880 | F000249 | MESEERMFFPRDTFWGWAQLDLAPPHNEIDPNLCAGNAGQFGGVNAPCSLFARYMLSGMLEVRPFGRGQLRRFMVFGAPAFLFGKTVPKTLYTWSPDAIGIEHSWGIGIFIAKGFEFRVTQHFLFDRLGARNTNLGPADLGNNR |
LJN_F7QKVOU01BLRQK | LJN_03885210 | F003651 | MESRRPLLDVIELKEWCYFPNDFRPTEIHVRVAVHDSGRFAGNVTGEETDPSGSSQTVFESTNEPENQRQVRSGETFTHIFPLKVLYAAHADNVRITLYLFKGAPSGPAVGDIAKVFIAVAARKVM |
LJN_F7QKVOU01C7D9W | LJN_02676700 | F100759 | AIGQSLNLSTKTITAPQSGRQQFYRLRATTALTITNITVSGGNVVIKYD |
LJN_F7QKVOU01CAQZF | LJN_00765090 | F001103 | MAQVITRCRLTGHYMFMGIDADPKQFTGSSGPFARKFCPFCASDHLWHKEDSKFLAPKTMVGPHIQRAS |
LJN_F7QKVOU01CAWO3 | LJN_00737350 | F105273 | MILIMVTAGFFSSGQSSTDSVYTGTLDSVKAEVVIDRETKGLTKAGLAKAIGTGTIYNSTSPYHNDLHEFTYLVAMRDFCNKTLLEMRTNGEANKKRSKELKRELSNAKAKIKFFKI |
LJN_F7QKVOU01CHX2V | LJN_00870650 | F007347 | AEFNGILPIEAREKARAAKDHFDNLYLIVDQQHRWKSVFLPDPRPRVLDPLLVGELKQSRASKYYLIHQFDLTEAEQYLANEFAIKLG |
LJN_F7QKVOU01CKHJT | LJN_01720380 | F101553 | MEGSVKADKGQFDEVLKRMLAREPQRTTDIKAPKKVPVPQKSVKQK |
LJN_F7QKVOU01CUIZC | LJN_01887030 | F086199 | YALVGSQHRPGQHGPLTGIHVILSNGAGDTERQHREAQILQTGLFYSAARFRIIEGSPNPAEWLEVFETGDPDPLHAYPRAAGHTFPAPQIHLQLSQSFRLAGAPRAAAHVPEGRLAGR |
LJN_F7QKVOU01CXALT | LJN_02088450 | F028250 | MNQPNQVQEKALKPPGLLPKNVQSWLLISLALLMVLIM |
LJN_F7QKVOU01CXJR8 | LJN_03990840 | F033537 | MDTTQHDEGDVRPGDLLVGANAIRAFLVSLGMPEKTAEPYYLKRSGWPIGNTAKGGGKLIASKRRLSSHTSKIARGSSAA |
LJN_F7QKVOU01D0GI5 | LJN_03157490 | F025159 | VGQVVWADSGEREYGIELYRPENFWGIYFPPEDWELGVPAVTVVSAAAASGASQTRVAMKEEPSEPSTETQALQIPEGGTIAILRGIASNGVPFQERDLILPVGERDATMLIGPMVGLGSTLQVIFSKNCVEDALVTATSHSREYDRWRIWLNFSRVLLVAKG |
LJN_F7QKVOU01D4HKV | LJN_01247990 | F059012 | DHVVLVGTGITIKNADDPLAEAVVQSFQSQIHSAFQHTGDNVLFAKLPARHLTADELAGYSRTAPVLLVQLEAKSKELAVLYGYLGPVNAFGSMTAD |
LJN_F7QKVOU01D8AAD | LJN_02448650 | F085994 | QTKWTGPSMNYAVDPNAPRGSAKVVNGTGEKGFDVSVDRTVYDASGKELRHDTFRSHYIPDSPTTVYGPGRTPPGPYIVLPTHF |
LJN_F7QKVOU01DAELT | LJN_01465660 | F042040 | PGLGQVVRCRSCDSVLMVFIEARGLICVDLSGLASLG |
LJN_F7QKVOU01DFODB | LJN_00659570 | F002314 | TVAELNMGGGIGSSDRHLAPGSLLSLKFSHGVRSIRAQAIVRGARPQAMAFEFVDMELDERSRLRKLLLELGGLPQPSNVVNRTKRTGRIALMK |
LJN_F7QKVOU01DIU4B | LJN_03973350 | F039575 | TDDPIRALLASIDPTPFIWVPKGNVVIMQTAVEEAGGDPDEVTAWVEAHGGELDRTLPVVATRRGVTSVPKPVGKKYYVVPESALAG |
LJN_F7QKVOU01DNOJA | LJN_02282320 | F081655 | MGVTIELQNLGDAQLEHALSGRQGEWRVSIAGSRAAENWDLRVDGPNGFERSYALGCRR |
LJN_F7QKVOU01DOQIE | LJN_03649110 | F068500 | VSTPETAALSRRTLATITAAARTIYSYDASLDDLCARATEQLDEAAREEFAALRTDADAVMVVARGQLRDLR |
LJN_F7QKVOU01DT6CE | LJN_01010270 | F062936 | MASYAQFLGRKVTVQYRVGDVLLPASGTFAADSGRSIFLEQHVEQRGKRSYFRWEIPYQYIHRIEEAEETPEPPAASKTVPIE |
LJN_F7QKVOU01EA3K7 | LJN_01465590 | F029856 | AAWADGYATAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPVEQVEKFKPYSTASLYAFAREGFLSTSEKRGPA |
LJN_F7QKVOU01EBMPI | LJN_02483720 | F052058 | VATKFVGDAYLNRKQRSARLNFIFARNHQIRGALEGITPLAHPSKNQQSIRVIREEVERIEWALKEILPG |
LJN_F7QKVOU01EJ2ON | LJN_02001230 | F065049 | RKSEEYLECAFRSPNDHEVVPQVLRLEVAGFGTPAIHAQKREDGSWAASFRLPPALDAGWHPVRLRFADTGFSNELRIAVDVPVERPSQVVVQDIYDGRSWNRSEVRIDDGGFVSFWVSGLPENRSALDVRALLGGIPLQITWLGPDEKSGCCQLNAKVPPDLAKGLH |
LJN_F7QKVOU01EK6JM | LJN_01379120 | F103624 | MLLAVSLLASSATAQSDSNPKWDLFVGYQWLHPGGTVPAPFGDPNNPIAFKVPDMAKGFGSALTYNFDPHWGVEFDLGHNWGDSNYETTGSVGPRFIWRTDSANYFLHTLVSL |
LJN_F7QKVOU01EKK59 | LJN_02176720 | F071448 | DAYAPNMFEELRERSLVYAATAPADPLTGDSSRKEEGAAAQTESRTERKTIITLALLGSDAGLYGAARVAVTAR |
LJN_F7QKVOU01ES684 | LJN_02457660 | F066706 | DQSKGKLISFSVKMISKDNYQVQLPEQLEAGEYGFVWVKNMELKEFTVFAFGVDWKNSD |
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