Metagenome / Metatranscriptome Family F095437

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095437
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	41 residues
Representative Sequence	MTLTWTKEDSPRWDADKQRLFGPAELAAVGLAAPAPGEPVA
Number of Associated Samples	98
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	98.10 %
% of genes from short scaffolds (< 2000 bps)	95.24 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.476 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (17.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.39% β-sheet: 2.90% Coil/Unstructured: 79.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13193	AMP-binding_C	31.43
PF00725	3HCDH	31.43
PF04909	Amidohydro_2	7.62
PF13411	MerR_1	5.71
PF02737	3HCDH_N	5.71
PF02515	CoA_transf_3	3.81
PF02803	Thiolase_C	1.90
PF07690	MFS_1	1.90
PF13404	HTH_AsnC-type	0.95
PF13673	Acetyltransf_10	0.95
PF00171	Aldedh	0.95
PF02254	TrkA_N	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	37.14
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	5.71
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	5.71
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	5.71
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	5.71
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	5.71
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	5.71
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	3.81
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	1.90
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.95
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.95
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.48 %
Unclassified	root	N/A	9.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.48 %
Unclassified	root	N/A	9.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.48 %
Unclassified	root	N/A	9.52 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.19 %
Unclassified	root	N/A	9.52 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	48.57 %
Unclassified	root	N/A	9.52 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	40.95 %
Unclassified	root	N/A	9.52 %

Name	Rank	Taxonomy	Distribution
Jatrophihabitantales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales	10.48 %
Unclassified	root	N/A	9.52 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.90 %

Name	Rank	Taxonomy	Distribution
Jatrophihabitantaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae	10.48 %
Unclassified	root	N/A	9.52 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.90 %

Name	Rank	Taxonomy	Distribution
Jatrophihabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans	10.48 %
Unclassified	root	N/A	9.52 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.90 %

Name	Rank	Taxonomy	Distribution
unclassified Jatrophihabitans	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans	10.48 %
Unclassified	root	N/A	9.52 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.90 %

Name	Rank	Taxonomy	Distribution
Jatrophihabitans sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	10.48 %
Unclassified	root	N/A	9.52 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090003\|LJN_F7QKVOU01AU4EN	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	522	Open in IMG/M
3300000886\|AL3A1W_1202271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	517	Open in IMG/M
3300000955\|JGI1027J12803_108763738	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300001471\|JGI12712J15308_10186038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300002245\|JGIcombinedJ26739_101116258	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300004499\|Ga0068984_1107318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	621	Open in IMG/M
3300005168\|Ga0066809_10055840	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005334\|Ga0068869_100170201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1701	Open in IMG/M
3300005363\|Ga0008090_15143466	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005436\|Ga0070713_100563703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1079	Open in IMG/M
3300005437\|Ga0070710_10486453	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300005577\|Ga0068857_101668204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	623	Open in IMG/M
3300005616\|Ga0068852_101699775	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300006577\|Ga0074050_11172990	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300006755\|Ga0079222_12077056	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300006804\|Ga0079221_11396175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	556	Open in IMG/M
3300009623\|Ga0116133_1131766	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300010048\|Ga0126373_11589398	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300010397\|Ga0134124_12654655	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300010866\|Ga0126344_1194237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1467	Open in IMG/M
3300010869\|Ga0126359_1717668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	861	Open in IMG/M
3300010876\|Ga0126361_10475935	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300010876\|Ga0126361_10515491	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300011068\|Ga0138599_1035927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	627	Open in IMG/M
3300011086\|Ga0138564_1075728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	533	Open in IMG/M
3300012350\|Ga0137372_10165900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1792	Open in IMG/M
3300012476\|Ga0157344_1018966	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300012513\|Ga0157326_1081279	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012683\|Ga0137398_10477127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	855	Open in IMG/M
3300012685\|Ga0137397_10879238	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012960\|Ga0164301_11360852	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012961\|Ga0164302_11627378	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300014497\|Ga0182008_10089655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1516	Open in IMG/M
3300015372\|Ga0132256_103157035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	554	Open in IMG/M
3300016319\|Ga0182033_11377475	All Organisms → cellular organisms → Bacteria → Terrabacteria group	635	Open in IMG/M
3300017821\|Ga0187812_1027539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1948	Open in IMG/M
3300017926\|Ga0187807_1044470	Not Available	1375	Open in IMG/M
3300017930\|Ga0187825_10427276	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300017932\|Ga0187814_10376540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	550	Open in IMG/M
3300017959\|Ga0187779_10448957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	847	Open in IMG/M
3300017959\|Ga0187779_10886214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
3300017961\|Ga0187778_11196229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300017974\|Ga0187777_11290379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	536	Open in IMG/M
3300017975\|Ga0187782_11147962	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300018046\|Ga0187851_10054816	All Organisms → cellular organisms → Bacteria	2588	Open in IMG/M
3300018090\|Ga0187770_11799938	All Organisms → cellular organisms → Bacteria → Terrabacteria group	501	Open in IMG/M
3300020580\|Ga0210403_10448825	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300020582\|Ga0210395_10614260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	816	Open in IMG/M
3300021170\|Ga0210400_10875373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	734	Open in IMG/M
3300021401\|Ga0210393_10431709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1075	Open in IMG/M
3300021402\|Ga0210385_11439823	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300021403\|Ga0210397_10045510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2794	Open in IMG/M
3300021404\|Ga0210389_11431660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300021405\|Ga0210387_10701936	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300021474\|Ga0210390_11295100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	584	Open in IMG/M
3300021477\|Ga0210398_10174257	All Organisms → cellular organisms → Bacteria	1753	Open in IMG/M
3300021477\|Ga0210398_10837883	All Organisms → cellular organisms → Bacteria → Terrabacteria group	739	Open in IMG/M
3300024279\|Ga0247692_1081502	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300025906\|Ga0207699_10316071	Not Available	1094	Open in IMG/M
3300025928\|Ga0207700_11789623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300025929\|Ga0207664_11053012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	728	Open in IMG/M
3300025931\|Ga0207644_10308676	Not Available	1277	Open in IMG/M
3300025934\|Ga0207686_10566027	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300027058\|Ga0209111_1016179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	859	Open in IMG/M
3300027176\|Ga0208992_1020439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	859	Open in IMG/M
3300027517\|Ga0209113_1011583	Not Available	1109	Open in IMG/M
3300027528\|Ga0208985_1109035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	530	Open in IMG/M
3300027570\|Ga0208043_1015513	Not Available	2479	Open in IMG/M
3300027725\|Ga0209178_1073334	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300028773\|Ga0302234_10193401	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300028775\|Ga0302231_10256744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	731	Open in IMG/M
3300028801\|Ga0302226_10189804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	882	Open in IMG/M
3300028877\|Ga0302235_10178782	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300028879\|Ga0302229_10430527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	585	Open in IMG/M
3300028906\|Ga0308309_11581553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300029944\|Ga0311352_11372156	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300029999\|Ga0311339_11743800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300030007\|Ga0311338_10500128	Not Available	1275	Open in IMG/M
3300030007\|Ga0311338_11330597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	673	Open in IMG/M
3300030054\|Ga0302182_10452047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300030225\|Ga0302196_10103951	Not Available	1612	Open in IMG/M
3300030399\|Ga0311353_11643061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	517	Open in IMG/M
3300030494\|Ga0310037_10378189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300030520\|Ga0311372_11807467	Not Available	729	Open in IMG/M
3300030520\|Ga0311372_12087894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	659	Open in IMG/M
3300030524\|Ga0311357_10886224	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300031234\|Ga0302325_10178928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	3710	Open in IMG/M
3300031236\|Ga0302324_102028354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300031236\|Ga0302324_102514767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300031525\|Ga0302326_12198093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	704	Open in IMG/M
3300031549\|Ga0318571_10367066	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300031564\|Ga0318573_10767991	All Organisms → cellular organisms → Bacteria → Terrabacteria group	518	Open in IMG/M
3300031572\|Ga0318515_10449294	All Organisms → cellular organisms → Bacteria → Terrabacteria group	689	Open in IMG/M
3300031573\|Ga0310915_10103006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1931	Open in IMG/M
3300031640\|Ga0318555_10252085	All Organisms → cellular organisms → Bacteria → Terrabacteria group	954	Open in IMG/M
3300031781\|Ga0318547_10728575	All Organisms → cellular organisms → Bacteria → Terrabacteria group	617	Open in IMG/M
3300031845\|Ga0318511_10222546	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300031860\|Ga0318495_10241246	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300032066\|Ga0318514_10765076	All Organisms → cellular organisms → Bacteria → Terrabacteria group	514	Open in IMG/M
3300032160\|Ga0311301_11371261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	885	Open in IMG/M
3300032805\|Ga0335078_10846345	Not Available	1107	Open in IMG/M
3300032828\|Ga0335080_10048524	Not Available	4688	Open in IMG/M
3300032954\|Ga0335083_10509018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp.	1007	Open in IMG/M
3300032954\|Ga0335083_10945665	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300034163\|Ga0370515_0248675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	754	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.48%
Host-Associated	Host-Associated	9.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.76%
Plants	Host-Associated → Plants	9.52%
Aquatic	Environmental → Aquatic	5.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Peat	Environmental → Terrestrial → Peat	18.10%
Freshwater	Environmental → Aquatic → Freshwater	5.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	18.10%
Loam	Environmental → Terrestrial → Soil → Loam	11.43%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.10%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	18.10%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.95%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.00%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	17.14%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.71%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.81%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.95%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.95%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.95%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.95%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090003	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN	Host-Associated	Open in IMG/M
3300000886	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm-3A)- 1 week illumina	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004499	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 82 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011068	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011086	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027058	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027176	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027517	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030225	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LJN_00333950	2088090003	Quercus Rhizosphere	MTLHWTKEDDPRWNADKQRLFGPEDLAAVDLDPPAAGTPV
AL3A1W_12022712	3300000886	Permafrost	MTLHWTKEDDPRWDAAKQRLFGPDDLAAVDLDPPAPGAPVADE
JGI1027J12803_1087637381	3300000955	Soil	MTLTWTKENSPRWDADKQRIFGPAELAAVGLPGPAPGEPVADE
JGI12712J15308_101860382	3300001471	Forest Soil	MTLHWTKEDDPRWDAAKQRLLGPTSRLPSVSLRPPPARRS
JGIcombinedJ26739_1011162581	3300002245	Forest Soil	MALTWTKENSPRWDADKQRIFGPAELAAVGLAAPAPGEPVANEW
Ga0068984_11073182	3300004499	Peatlands Soil	MTLHWTKEDPPHWDADKQRLFGPDELAAVGFGQPAPGSAIADEW*
Ga0066809_100558402	3300005168	Soil	MTLTWTKENSPRWDADKQRIFGPAELAAVGWPDPRPASPWRTNGGE*
Ga0068869_1001702012	3300005334	Miscanthus Rhizosphere	MTLTWTKENSPRWDADKQRIFGPAELAAVGLPGPAPGEPV
Ga0008090_151434662	3300005363	Tropical Rainforest Soil	MALHWIKEDTPRWDADKQRFFGPEELAAVGYEPPSPGSVIAD
Ga0070713_1005637032	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTLIWTKENSPRWDADKQRVFGPAELAAVGLAEPAPGEPV
Ga0070710_104864531	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTLTWTKENSPRWDADKQRIFGPAELAAVGLPGPAPGGPV
Ga0068857_1016682042	3300005577	Corn Rhizosphere	MTLAWTRENAPRWDEDKQRVFGPDELLATGLPGFRPGEPVA
Ga0068852_1016997752	3300005616	Corn Rhizosphere	MTLTWTKENSPRWDADKQRIFGPAELAAVGLPGPAPGEPVA
Ga0074050_111729902	3300006577	Soil	MTLTWTKENSPRWDADKQRIFGPAELAAVGLAEPAPGEPVADLL
Ga0079222_120770561	3300006755	Agricultural Soil	MTLTWSKENSPRWDADKQRIFGPAELAAVGLAEPPPGRPVA
Ga0079221_113961751	3300006804	Agricultural Soil	MANGLRWIKEDAPRWDADKQRLFGPAELAATGLTPP
Ga0116133_11317662	3300009623	Peatland	MTREGQVVTLTWTKENSPRWDEDKQRTFGPAELAATALAAPAPGAP
Ga0126373_115893981	3300010048	Tropical Forest Soil	MTLTWSKENSPRWDADKQRVFGPAELAAVGLAEPRPG
Ga0134124_126546552	3300010397	Terrestrial Soil	MTLTWTKENSPRWDADKQRIFGPAELAAVGLPGPA
Ga0126344_11942372	3300010866	Boreal Forest Soil	MGTQGLHWSKEDTPRWDAGKQRMFGPAELAAVGFDRPAPGEPMANEWWHVSDDD
Ga0126359_17176681	3300010869	Boreal Forest Soil	MTLHWTKEDDPRWDAAKQRLLGPDEQAAVGLGPSAPG
Ga0126361_104759351	3300010876	Boreal Forest Soil	MTLTWTKENSPRWDADKQRILGPAELAAVGLAAPAPGEPVANE
Ga0126361_105154911	3300010876	Boreal Forest Soil	MTLTWTKENSPRWDAAKQRIFGPAELAAVGLPAPAPGDPVPNE
Ga0138599_10359271	3300011068	Peatlands Soil	MTLHWTKEDPPHWDADKQRLFGPDELAAVGFGEPAP
Ga0138564_10757283	3300011086	Peatlands Soil	MTLHWTKEDTPHWDADKQRLFGPDELAAVGFDEPAPGTA
Ga0137372_101659003	3300012350	Vadose Zone Soil	MTLTWTKENSPRWDADKQRIFGSAELAAVGLAAPVPGQPVP
Ga0157344_10189662	3300012476	Arabidopsis Rhizosphere	MTLTWTKENSPRWDADKQRIFGPAELAAVGLAGPAPAEPVAD
Ga0157326_10812791	3300012513	Arabidopsis Rhizosphere	MTLTWTKENSPRWDADKQRIFGPAELAAVGLPGPAPGE
Ga0137398_104771272	3300012683	Vadose Zone Soil	MTQAPQKRAMTLHWAREDDPRWDAAKQRLLGPDELAAVDLDPPASGAPVAGE
Ga0137397_108792381	3300012685	Vadose Zone Soil	MTLTWTKENSPRWDADKQRAFGPAELAAVGLAEPAPGEPV
Ga0164301_113608522	3300012960	Soil	MTLTWTKENSPRWDADKQRVFGPAELAAVGLAEPAPGAP
Ga0164302_116273781	3300012961	Soil	VTLTWTKENSPRWDADKQRVFGPSELAAVGLAEPVPGT
Ga0182008_100896551	3300014497	Rhizosphere	VSLHWVKEDTPRWDAEKQRLFGAGELAAVGLDEPAAGAA
Ga0132256_1031570352	3300015372	Arabidopsis Rhizosphere	MTLTWTRENSPRWDADKQRVFGPAELAAVGLAEPAPGEPVAD
Ga0182033_113774752	3300016319	Soil	MTLTWTKEDSPRWDADKQRLFGPAELAAVGLAAPAPGEPVA
Ga0187812_10275391	3300017821	Freshwater Sediment	MTLHWTKEDTPHWDADKQRLFGPDELAAVGFGEPAPGAAIADEWWRV
Ga0187807_10444701	3300017926	Freshwater Sediment	MTLHWTKEDTPHWDADKQRLFGPDELAAVGFGEPAPGA
Ga0187825_104272761	3300017930	Freshwater Sediment	MTLTWTKENSPRWDADKQRVFGPAELAAVGLAEPAPGE
Ga0187814_103765401	3300017932	Freshwater Sediment	MTLHWTKEDTPHWDADKQRLFGPDELAAVGFGEPAPGAAIADEWWR
Ga0187779_104489572	3300017959	Tropical Peatland	MTLHWTKEDTPHWDADKQRLFGPDELAAVGFDEPAPGAPIADEW
Ga0187779_108862142	3300017959	Tropical Peatland	MTLTWTKENSPRWDADKQRVLGPAELAAVALTAPAPGEP
Ga0187778_111962291	3300017961	Tropical Peatland	MMLHWTKEDTPRWDADKQRLFGPDELAAVGFDEPAPGAAIADE
Ga0187777_112903791	3300017974	Tropical Peatland	MALHWVREDTPRWDAEKQRLFGPQELAAVGYEPPAPGSVVANE
Ga0187782_111479622	3300017975	Tropical Peatland	VTLTWTREDSPRWDADKQRLFDQAELAAVGLATPAPGE
Ga0187851_100548163	3300018046	Peatland	MTREGQVVTLTWTKENSPRWDEDKQRTFGPAELAATALAAPAPGAPVPNEWWRVT
Ga0187770_117999381	3300018090	Tropical Peatland	MTLRWIKEAAPHWDADKQRLFGPAELAAVGLAAPAA
Ga0210403_104488252	3300020580	Soil	MTLTWSKENSSRWDADKQRIFGPAELAAVGLPGPAPGEPVA
Ga0210395_106142601	3300020582	Soil	VTLHWTKEDDPRWDADKQRLFGPADLAAVDLDPPAAGTPVADEWW
Ga0210400_108753731	3300021170	Soil	MTFTWTKEAAPRWDADKQRLFGPVELAAVGLAPHGPGEPVADE
Ga0210393_104317091	3300021401	Soil	VTLHWTKEDDPRWDADKQRLFGPADLAAVDLDPPAAGTPVAD
Ga0210385_114398232	3300021402	Soil	MTLTWTKENSPRWDAGKQRLFGPAELAAVGLAAPSPGEPVANEWWR
Ga0210397_100455105	3300021403	Soil	MTLTWTKEDSPRWDADKQRLFGPAELAAVGLAPPGPGEPVADE
Ga0210389_114316601	3300021404	Soil	MTLHWTKEDDPRWDADKQRLFGPADLAAVDLDPPAAGTPVA
Ga0210387_107019361	3300021405	Soil	MTLTWTKENSPRWDADKQRIFGPAELAAVGLAGPAPGEPVAD
Ga0210390_112951001	3300021474	Soil	MTLTWTKEDSPRWDADKQRLFGPAELAAVGLAPPGPGEPV
Ga0210398_101742571	3300021477	Soil	MTLTWTKENSPRWDAGKQRLFGPAELAAVGLAAPSPGEPVAN
Ga0210398_108378832	3300021477	Soil	MTLTWTKEDSPCWDPDKQRLFGPAELAAVGLAPPRPGE
Ga0247692_10815022	3300024279	Soil	MTLTWTKENSPRWDADKQRIFGPAELAAVGLPGPALGEPVADEWW
Ga0207699_103160712	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MTLAWTKENSPRWDDSKQRIFGPDELAATALPALRPGESVA
Ga0207700_117896231	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTLAWTKENSPRWDADKQRIFGPDELAATALPALRQGES
Ga0207664_110530121	3300025929	Agricultural Soil	MTLAWTKENSPRWDDSKQRIFGPDELAATGVPALRPGES
Ga0207644_103086762	3300025931	Switchgrass Rhizosphere	MTLAWTKENSPRWDDSKQRIFGPDELAATGLPALRPGEP
Ga0207686_105660272	3300025934	Miscanthus Rhizosphere	MTLTWTKENSPRWDADKQRIFGPAELAAVGLAGPAPGEPVA
Ga0209111_10161791	3300027058	Forest Soil	MSLHWEKEDTPRWDADKQRLFGPAELAAVGLDPPAPGEALADE
Ga0208992_10204392	3300027176	Forest Soil	MGLHWSKEDTPRWDPGKQRMFGPAELAAVGFTAPAPDEPMANE
Ga0209113_10115832	3300027517	Forest Soil	MGLHWTKEDTPRWDAGKQRMFGPAELAAVGFAAPAPDEP
Ga0208985_11090351	3300027528	Forest Soil	MATGLRWIREDAPRWDADKQRLFGEAELAATALNPPAP
Ga0208043_10155133	3300027570	Peatlands Soil	MTLHWTKEDTPHWDADKQRLFGPDELAAVGFDEPT
Ga0209178_10733341	3300027725	Agricultural Soil	MTLTWTKENSPRWDADKQRIFGPAELAAVGLPGPAPG
Ga0302234_101934012	3300028773	Palsa	MTLTWTKENSPRWDAGKQRLFGAAELAAVGLAALPPGEPVANEW
Ga0302231_102567441	3300028775	Palsa	MTLTWTKENSPRWDAGKQRIFSPAELAAVGLAAASPGEPVANEWWRV
Ga0302226_101898042	3300028801	Palsa	MTLTWTKENSPRWDAGKQRLFGAAELAAVGLAAPSPGEPV
Ga0302235_101787821	3300028877	Palsa	MTLTWTKENSPRWDADKQRILGPAELAAVGLDAPAPGEPVAN
Ga0302229_104305271	3300028879	Palsa	LTLTWTKENSPRWDAGKQRLFGAAELAAVGLAAPPP
Ga0308309_115815531	3300028906	Soil	MTLTWTKEDSPRWDPDKQRLFGPAELAAVGLAPPGPGEPVADEWWRVN
Ga0311352_113721561	3300029944	Palsa	LTLTWTKENSPRWDADKQRILGPAELAAVGLDAPAPGEPVA
Ga0311339_117438002	3300029999	Palsa	MTLTWTKENSPHWDAGKQGLFGPAELAAVGLATPS
Ga0311338_105001281	3300030007	Palsa	LTLTWTKENSPRWDAGKQRLFGAAELAAVGLAAPPPGEPVA
Ga0311338_113305971	3300030007	Palsa	MATALHWIKEDTARWDADKQRLFGPGELAATGLTPP
Ga0302182_104520471	3300030054	Palsa	VQRPVLHWTKEGTPRWDAAKQRLFGPGELAATGMVAPA
Ga0302196_101039511	3300030225	Bog	VLHWTKEDTPRWDAAKQRLFGPEELAATGMVAPAPGS
Ga0311353_116430612	3300030399	Palsa	MTLTWTKENSPRWDAGKQRLFGPAELAAVGLAASSPGEP
Ga0310037_103781891	3300030494	Peatlands Soil	MTLHWTKENTPHWDADKQRLFGPDELAAVGFDEPAPGAAIADEWWRV
Ga0311372_118074672	3300030520	Palsa	MATGLHWTREESPGWDEDKRRLFGPAELAATALVPPP
Ga0311372_120878941	3300030520	Palsa	MVTALHWTREDTPRWDADKQRLFGPGELAATGLTPPAPGTP
Ga0311357_108862241	3300030524	Palsa	MTLTWTKENSPRWDADKQRILGPAELAAVGLAGPAPGEPVA
Ga0302325_101789281	3300031234	Palsa	VTLTWTKENSPRWDAGKQRLFGAAELAAVGLAATSPGEPVANEWWRVT
Ga0302324_1020283541	3300031236	Palsa	MTLTWTKENSPHWDAGKQALFGPAELAAVGLAMPSPGEPVAN
Ga0302324_1025147671	3300031236	Palsa	MTLHWTKEDTPRWDAEQQRLFGPAELAAVGLQAPEPGTAIADEWWRV
Ga0302326_121980931	3300031525	Palsa	MTLTWTKENSPRWDADKQGLFGSAELAAAGLAIPSPGEP
Ga0318571_103670661	3300031549	Soil	MTLTWSKENSPRWDTDKQRIFGPAELAAVGLAEPAPDE
Ga0318573_107679911	3300031564	Soil	MTLTWTKEASPRWDADKQRLFGPAELAAVGLPAPAPGE
Ga0318515_104492943	3300031572	Soil	MTLMWTKEASPRWDADKQRLFGPAELAAVGLAPPAPGAP
Ga0310915_101030063	3300031573	Soil	MTLTWTKENSPRWDADKQKVFGPAELAAVGLAEPAPD
Ga0318555_102520851	3300031640	Soil	MTLTWTKEASPRWDADKQRLFGPAELAAVGLAAPAP
Ga0318547_107285751	3300031781	Soil	MTLTWTKEDSPRWDADKQRLFGPAELAAVGLAAPAP
Ga0318511_102225461	3300031845	Soil	MTLTWSKENSPRWDADKQRIFGPAELAAAGRRSAAC
Ga0318495_102412461	3300031860	Soil	MTLTWSKENSPRWDADKQRIFGPAELAAAGLAGSPPGEP
Ga0318514_107650762	3300032066	Soil	VTLTWTKEASPRWDADKQRLFGPAELAAVGLPAPAPGEPV
Ga0311301_113712611	3300032160	Peatlands Soil	MTLTWTKENSPRWDAGKQQVLGPIELAAVGLVAPSPGE
Ga0335078_108463451	3300032805	Soil	MTLRWVKEDSPRWDADKQRLLGPAELAAVGLTPPAP
Ga0335080_100485241	3300032828	Soil	MTLHWTKEDTPHWDADKQRLFGPDELAAVGFHQPAPGAAIADEWWRV
Ga0335083_105090181	3300032954	Soil	MTLTWSKENSPRWDADKQRIFGPAELAAVGLAEPP
Ga0335083_109456651	3300032954	Soil	MTLTWTKENSPRWDADKQRVFGPAELAAVGLAGPAPGEPV
Ga0370515_0248675_587_754	3300034163	Untreated Peat Soil	MTLTWTKENSPHWDAGKQGLFGPAELAAAGLAMPSPGEPVANEWWRVTDGTELAGY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095437

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences