NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F071448

Metagenome / Metatranscriptome Family F071448

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F071448
Family Type Metagenome / Metatranscriptome
Number of Sequences 122
Average Sequence Length 58 residues
Representative Sequence SLVYAATAPDDPLGKKEGASAQIANYTRKKTIITRALLGSDAGLYGAARIPAS
Number of Associated Samples 112
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(12.295 % of family members)
Environment Ontology (ENVO) Unclassified
(23.770 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.098 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 6.17%    β-sheet: 17.28%    Coil/Unstructured: 76.54%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF00155Aminotran_1_2 35.25
PF00849PseudoU_synth_2 4.10
PF06877RraB 3.28
PF00909Ammonium_transp 3.28
PF01293PEPCK_ATP 3.28
PF04079SMC_ScpB 2.46
PF02554CstA 2.46
PF03747ADP_ribosyl_GH 2.46
PF14534DUF4440 1.64
PF00670AdoHcyase_NAD 1.64
PF01479S4 1.64
PF13376OmdA 1.64
PF00190Cupin_1 1.64
PF01384PHO4 0.82
PF02616SMC_ScpA 0.82
PF11645PDDEXK_5 0.82
PF08922DUF1905 0.82
PF05050Methyltransf_21 0.82
PF08448PAS_4 0.82
PF13751DDE_Tnp_1_6 0.82
PF00480ROK 0.82
PF02770Acyl-CoA_dh_M 0.82

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 122 Family Scaffolds
COG0564Pseudouridine synthase RluA, 23S rRNA- or tRNA-specificTranslation, ribosomal structure and biogenesis [J] 4.10
COG1187Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605Translation, ribosomal structure and biogenesis [J] 4.10
COG0004Ammonia channel protein AmtBInorganic ion transport and metabolism [P] 3.28
COG1866Phosphoenolpyruvate carboxykinase, ATP-dependentEnergy production and conversion [C] 3.28
COG3076Regulator of RNase E activity RraBTranslation, ribosomal structure and biogenesis [J] 3.28
COG1386Chromosome segregation and condensation protein ScpBTranscription [K] 2.46
COG1397ADP-ribosylglycohydrolasePosttranslational modification, protein turnover, chaperones [O] 2.46
COG1966Carbon starvation protein CstA (peptide/pyruvate transporter)Energy production and conversion [C] 2.46
COG0499S-adenosylhomocysteine hydrolaseCoenzyme transport and metabolism [H] 1.64
COG1940Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domainTranscription [K] 1.64
COG0306Phosphate/sulfate permeaseInorganic ion transport and metabolism [P] 0.82
COG1354Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin familyReplication, recombination and repair [L] 0.82
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.82


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil12.30%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa9.02%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog7.38%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.56%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.56%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.92%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.92%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil4.10%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog4.10%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.10%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.28%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.28%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.46%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.46%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.46%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.46%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.64%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.64%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.64%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa1.64%
SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment0.82%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.82%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.82%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.82%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.82%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.82%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.82%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.82%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.82%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.82%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.82%
Quercus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere0.82%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.82%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090003Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJNHost-AssociatedOpen in IMG/M
3300001084Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009638Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10EnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010364Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010937Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300023056Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2EnvironmentalOpen in IMG/M
3300025434Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025996Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301 (SPAdes)EnvironmentalOpen in IMG/M
3300026489Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-AEnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300027334Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027505Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027684Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028748Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2EnvironmentalOpen in IMG/M
3300028775Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2EnvironmentalOpen in IMG/M
3300028798Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029939I_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029952II_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029956Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2EnvironmentalOpen in IMG/M
3300029993Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2EnvironmentalOpen in IMG/M
3300030013Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3EnvironmentalOpen in IMG/M
3300030056Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3EnvironmentalOpen in IMG/M
3300030057Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1EnvironmentalOpen in IMG/M
3300030518Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2EnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030688II_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300030737Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031837Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033824Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9EnvironmentalOpen in IMG/M
3300034199Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LJN_021767202088090003Quercus RhizosphereDAYAPNMFEELRERSLVYAATAPADPLTGDSSRKEEGAAAQTESRTERKTIITLALLGSDAGLYGAARVAVTAR
JGI12648J13191_100159643300001084Forest SoilIVYAATAPAGPLSSITLGKESAPAQTESNRERKTIITRAVLGSDAGLYGAARVSMLPR*
JGIcombinedJ26739_10173710313300002245Forest SoilAPADPVMSQGWMSQSSANRAGASAQTESLTERKTIITPALLGSDAGLYGAARVAAVG*
JGIcombinedJ51221_1042137513300003505Forest SoilTDPLGNSPGKKETAADAKARIERKTIITRALLGSDAGLYGAARVAALAG*
Ga0062384_10018590113300004082Bog Forest SoilVYAATAPADPLNSDLPGKEEGASAQTESRSERKTIITRALLGSDAGLYGAAKVAVTTG*
Ga0062386_10102164413300004152Bog Forest SoilFEELRERSLVYAATAPPNPLISDSLGKVEEGAAAQTESRSERKTIITRALLGSDAGLYGAARVPVLAG*
Ga0062386_10116651813300004152Bog Forest SoilIYAATAPEDPMNDPLSKKEGASAQIANYTRKKTIITRALLGSDAGLYGAARIPAS*
Ga0066679_1013990413300005176SoilSLVYAATAPEDSVGRDEGASAQVVARTRRKTIITRALLGSDAGLYGAARIPATA*
Ga0070713_10046627413300005436Corn, Switchgrass And Miscanthus RhizospherePKMFSELRERSLVYAASAPDDPNAKKEGASAQIANYSRKKTIITQALLGSDAGLYGAARVPVSQ*
Ga0070698_10206619723300005471Corn, Switchgrass And Miscanthus RhizosphereSLVYAATAPEDPLGEEEGASAQVEGRTRRKTIITRALLGSDAGLYGAAWIPTLSR*
Ga0073909_1023011723300005526Surface SoilLVYAASAPVDPMAKKEGASAQIANYTRKKTIITQALLGSDAGLYGAARIPASQ*
Ga0070732_1061486513300005542Surface SoilFAPTMFAELCDRSLVYAATVPDDVRITNKAPSPQIANYTSKKTIITKAILGSDAGLFGAARTPLSQ*
Ga0070764_1008645813300005712SoilLRARCLVYAATAPANPLMMMHDPSRKEAGASAQTESRTSGKTIITVALLGSDAGLYGAARAAVLPG*
Ga0070766_1121708323300005921SoilVYAATAPIDPLSGDARRKEGASAQTESRTERKTIITRALLGSDAGLYGAARVAVSAG*
Ga0070717_1146140513300006028Corn, Switchgrass And Miscanthus RhizospherePRMFAELRGRSLVYAASAPEDPSVKKEGAAAQMPSYFPKKTIITQATLGSDAGLYGAARIPSF*
Ga0075015_10037711913300006102WatershedsATVPADPLTTASLQEQEAAQTERRSERKTIITRALLGSDAGLYGAARLPIDRGQ*
Ga0075030_10113241023300006162WatershedsPLGNDSLGQEEGASAQTESRSERKTIITLALLGSDAGLYGAARISVLGV*
Ga0070765_10023935733300006176SoilDAFAPTMFEELRQRSIVYAATAPTDPLRDSSRKEEGASAQTASRSGQETIITRAVLGSDAGLY*
Ga0066709_10014912043300009137Grasslands SoilRERSLVYAATAPDDPLGKDEGASAHVVARTRRKTIITRALLGSDAGLYGAARIPLMGD*
Ga0116113_109411323300009638PeatlandVYAATDPLSGDSLGKEGAAAQTESRTERKTIITRALLGSDAGLYGAARVAVSAG*
Ga0116101_100554633300009759PeatlandLIYAATAPEDPVGKKEGASAQIANYTRKKTIITRALLGSDAGLYGAARLPAS*
Ga0126378_1012231933300010361Tropical Forest SoilVYAASAPIDPLATGKQGASAQIASYTRRKTIVTQAILGSDAGLYGAAHIPAM*
Ga0134066_1010431723300010364Grasslands SoilAASAPEEPTGKKEGASAQIASYSRKKTIITQALLGSDAGLYGAARLPDLV*
Ga0126379_1280731723300010366Tropical Forest SoilRERSLVYAATAPDDHAGKKEGAAGQIANYARKKTIITRALLGSDAGLYGAARIPMTQG*
Ga0126381_10170936623300010376Tropical Forest SoilASAPIDPLATGKQGASAQIASYTRRKTIVTQAILGSDAGLYGAAHIPAV*
Ga0126381_10304911813300010376Tropical Forest SoilLRERSLVYAASAPEDPNARKEGASAQIANYTRKKTIITQALLGSDAGLYGAARIPASR*
Ga0136449_10288427823300010379Peatlands SoilRERSLVYAATAPEDPLGKKEGASAQIAGYTRKKTIITRALLGSDAGLYGAARIPAS*
Ga0126383_1353421513300010398Tropical Forest SoilRSLVYAASAPEDPMAKKQGASAQIANYTRKKTIITRALLGSDAGLYGAARIPLTR*
Ga0126361_1082015813300010876Boreal Forest SoilRARSLVYAATAPVDPLMSGSRKEEGASAQTESRTARKTIITRALLGSDAGLYGAARVTVLAT*
Ga0137776_127582023300010937SedimentRERSLVYAATAPEDPLDKKEGASAHIAGYTRKKTIITRALLSSDAGLYGAARLPAS*
Ga0150983_1455878723300011120Forest SoilSLVYAATAPEDPLGKKEGASAQIANYTRKKTIITQALLGSDAGLYGAARVPAS*
Ga0137391_1140792323300011270Vadose Zone SoilDMFEELRERSLVYAATAPADPLMHDFSGKDEGASAQTESLTERKTIITRALLGSDAGLYGAARVPVLTG*
Ga0137388_1144252113300012189Vadose Zone SoilATAPADPLMTDSFGKEEGASAQTESRTKRKTIITRALLGSDAGLYGAARVAVLAG*
Ga0137383_1078027613300012199Vadose Zone SoilLRERSLVYAATAPDDSLGKKEGASAQIANYTRKKTIITRALLGSDAGLYGAARIPAS*
Ga0137379_1141586823300012209Vadose Zone SoilLRERSLVYAATGPEDPLGKKEGASAQIPAYTRKKTIITRSLLGSDAGLYGAARIPTS*
Ga0137370_1084236023300012285Vadose Zone SoilERSLVYAASAPEEPTGKKEGASAQIASYSRKKTIITQALLGSDAGLYGAARLPDLV*
Ga0137360_1041322933300012361Vadose Zone SoilLVYAATAPANPLMSEASEKHEGASAQTESRTERKTIITRALLGSDAGLFGAARVAVTAG*
Ga0126369_1234056423300012971Tropical Forest SoilFGAASPEKPNPKKKRTTATNRNQTSKKTIITQALLGSDAGLYGAARVPVSQ*
Ga0181538_1068006513300014162BogELRARSLVYAATAAADPVKSDSPGKEKTPAGQTKIRNERKTIITLALLGSDAGLYGAARAAVLVS*
Ga0181531_1005585533300014169BogAELRERSLIYAATAPEDPVGKKEGASAQIANYTRKKTIITRALLGSDAGLYGAARLPAS*
Ga0181531_1044682923300014169BogVYAATAPANPSMGNSFGEQEGAAAQTESRTERKTIITRALLGSDAGLYGAARVADTAG*
Ga0182018_1036657723300014489PalsaYAATAPADPLRSDSVGKAEGAAAQTESRSERKTIITRALLGSDAGLYGAARVAVLAP*
Ga0182016_1018296933300014493BogAPSMFEELRQRSVVYAGTAPADPLKSESLGKHEVASAHSESRGERKTIITRALLGSDAGLYGAARVAVLAV*
Ga0182015_1045186913300014495PalsaYAPSMFEELRQRSVVYAVTAPTDPLGNSLGKRETAAEAKGRNERKTIITRALLGSDAGLYGAARAAVLAG*
Ga0181525_1031893213300014654BogLRERSLVYAATAPTDPLSGDARGKEGASAQTESRTERKTIITRALLGSDAGLYGAARVAVLRS*
Ga0181525_1044718613300014654BogDMFEELRSRSVVYAATAPNDPPPANDSLGEESGTSAEIDSPHERKTIVTRALLGSDAGLYGAARAAVLAVVAAA*
Ga0182039_1195871423300016422SoilSLVYAASAPEDPTTSKQGASAQIANYTRKKTIITQALLGSDAGLYGAAWMPATQ
Ga0187820_107754713300017924Freshwater SedimentMFKEVCERSTIYAATAPDDPVGQEGRLLDNGATRLRRKTIITRALLGSDAGLYGGARLTA
Ga0187820_119242013300017924Freshwater SedimentAATAPDEPLDNSAEAKNVKGRTDRKTIITRALLGSDAGLYGAARVAELAG
Ga0187847_1005593713300017948PeatlandSMFDELRQRSVVYAGTAPTGPLKSESSGKNEVASAHAQSRSERKTIITRALLGSDAGLYGAARVAVVGG
Ga0187782_1004917813300017975Tropical PeatlandEMRERSIVYAATAPDDPLIDDPLSKEGRARTVHTGKKTIVTRALLGSDAGLYGAARIPAL
Ga0187890_1072619623300018044PeatlandERSLIYAATAPEDPVGKKEGASAQIANYTRKKTIITRALLGSDAGLYGAARLPAS
Ga0187858_1004765553300018057PeatlandSLVYAATAPDNPLGSSPSGTEEGASSQTESRSERKTVITLALLGSDAGLYGAARVAVPAG
Ga0210407_1145292213300020579SoilAEMRERSLVYAATAPEDPLAKKEGASAQIANYTRKKTIITRALLGSDAGLYGAARIPAS
Ga0210403_1063781723300020580SoilMFEELRERSLVYAATAPTDPLSIDSLGKEEGASAQTESRSERKTIITRALLGSDAGLYGAARVAVPAS
Ga0210403_1074231823300020580SoilATAPPDPLMHDSSRKDEGASAQTESRTERKTIITRALLGSDAGLYGAARVTVTS
Ga0210403_1107535623300020580SoilYAANAPEDSLAKKQGASAQIAAYAGKKTTMITRALLGSDAGLYGAARIPAS
Ga0210395_1113009113300020582SoilTMFEELRTRSLVYAATAPVDPLTTDSRKEAGASAQTESRTARKTIITRALLGSDAGLYGAARVTVLLG
Ga0210401_1151537023300020583SoilRMFEELLDRSLVYAATAPDDPLGGSAGANNIALRERKTVITRALLGSDAGLYGAARAVELVG
Ga0215015_1049966813300021046SoilLRERSLVYAATAPEDPLGKQEGASAQVLARTRRKTIITRALLGSDAGLYGAARLAAPGGG
Ga0210396_1004419553300021180SoilAATAPEDSSAKKEGASAQIAAYTRKKTIITRALLGSDAGLYGAARIPLS
Ga0210396_1028954513300021180SoilAATAPTDPLGNSPGKKETAADAKARIERKTIITRALLGSDAGLYGAARVAALAG
Ga0210389_1028301533300021404SoilERSLVYAATAPEDPTDKSKKEGASAQIAGYTRKKTIITRALLGSDAGLYGAARIPAS
Ga0210394_1148901223300021420SoilFAELRERSLVYAATAPEDPLDKLDKKEGASAQMAGYTRKKTIITRALLGSDAGLFGAARIPAS
Ga0210398_1138162813300021477SoilYAATAPADPLMMMHDPSRKEAGASAQTESRTSRKTIITVALLGSDAGLYGAARVAVLPG
Ga0210409_1011300013300021559SoilAASAPADLLAKKEGASAQIANYTKKKTIITQALLGSDAGLYGAARIPASQ
Ga0242666_103351633300022721SoilAPRMFEELLDRSLVYAATAPDDPLGGSAGANNIALRERKTVITRALLGSDAGLYGAARAVELVG
Ga0233357_102426313300023056SoilDPLMSDSLTKEEGASAQTESRTERKTIITRALLGSDAGLYGAARVAVLAG
Ga0208690_101208413300025434PeatlandAADPVKSDSPGKEKTPAGQTKIRNERKTIITLALLGSDAGLYGAARAAVLVS
Ga0207646_1153120823300025922Corn, Switchgrass And Miscanthus RhizosphereIMFEEMRERSLVYAATAPEDPLGEEEGASAQVEGRTRRKTIITRALLGSDAGLYGAAWIPTLSR
Ga0207664_1123006123300025929Agricultural SoilYAATAPADPLMSDSFGKEQGAASQTESRTERKTIITRALLGSDAGLYGAARVAMPAG
Ga0208777_100813223300025996Rice Paddy SoilVYAASAPDEPPGKKEGASAQIASYSRKKTIITQALLGSDAGLYGAARLPDLV
Ga0257160_104890423300026489SoilSLVYAATAPDDPLGKKEGASAQIANYTRKKTIITRALLGSDAGLYGAARIPAS
Ga0179593_1039453103300026555Vadose Zone SoilMFEELRERSLVYAATAPTNPLLSDPLGKEEGASAQTESRTERKTIITRALLGSDAGLYGAARVAVPAR
Ga0209529_103698123300027334Forest SoilELRERSIVYAATAPAGPLSSITLGKESAPAQTESNRERKTIITRAVLGSDAGLYGAARVSMLPR
Ga0209218_102796213300027505Forest SoilATAPANPLMMMHDPSRKEAGASAQTESRTSGKTIITVALLGSDAGLYGAARAAVLPG
Ga0209626_122205523300027684Forest SoilLVYAATAPTDPVIGDSLGKEEGASAQTESRTERKTIITRALLGSDAGLYGAARVAVLAG
Ga0209248_1025780813300027729Bog Forest SoilDELRQRSIVYAATAPSDPLRGDSSGKEEGASQTASRSGQETIITRAVLGSDAGLYGAARVATLAG
Ga0208989_1002210813300027738Forest SoilSLVYAATAPEDPLGKEEGASAQVEGRTRRKTIITRALLGSDAGLYGAAWIPTLSR
Ga0209772_1021075123300027768Bog Forest SoilSLVYAATAPADPLSGESLGKEEGAAAQTESRTERKTIITRALLGSDAGLYGAARAAVLAG
Ga0209580_1063365823300027842Surface SoilLVYAATAPDDPPGKKEGASAQIAAYTRKKTIITRALLGSDAGLYGAARIPAS
Ga0209180_1074456413300027846Vadose Zone SoilTAPADPLMTDSFGKEEGASAQTESRTKRKTIITRALLGSDAGLYGAARVAVLAG
Ga0209415_1102825423300027905Peatlands SoilATAPDDPLGNDSLGQEEGASAQTESRSERKTIITLALLGSDAGLYGAARISVLGV
Ga0209168_1034607313300027986Surface SoilSLVYAATAPADPLGSDSSGKEGASAQTESRGERKTIITRALLGSDAGLYGAARAAVLAG
Ga0302156_1034423313300028748BogVVYAGTAPADPLKSESLGKHEVASAHSESRGERKTIITRALLGSDAGLYGAARVAVLAV
Ga0302231_1018515213300028775PalsaVYAATAPADPLSSDSLGKQEGAAAQTESRSERKTIITRALLGSDAGLYGAARVAVSAG
Ga0302222_1001955713300028798PalsaYAPNMFEELRERSLVYAATAPADPLRSDSVGKAEGAAAQTESRSERKTIITLALLGSDAGLYGAARVAVLAP
Ga0311327_1019135213300029883BogAPNMFEELRERSLVYAATAPANPLMSDSSGKQEGAAAQTESRSERKTIITRALLGSDAGLYGAARVAALPG
Ga0311329_1026520513300029907BogELRERSLVYAATAPANPLMSDSSGKQEGAAAQTESRSERKTIITRALLGSDAGLYGAARVAALPG
Ga0311369_1071968013300029910PalsaSLVYAATAPPDPLRNGALEKKGASPHTANRRERTTTITRALLGSDAGLYGAARGAMLAG
Ga0311328_1064587423300029939BogFEELRQRSVVYAGTAPTDPLKSESLGKDEIASAHAESRSERKTIITRALLGSDAGLYGAARVAVVGG
Ga0311352_1142969113300029944PalsaLVYAATAPDDPLAKDAGKAVETRNARKTIVTRALLGSDAGLYGAGRAPILPV
Ga0311346_1020328313300029952BogLEELRERSLVYAATDPLSGDSLGKEGAAAQTESRTERKTIITRALLGSDAGLYGAARVAVSAG
Ga0302150_1013029623300029956BogPADPLKSESLGKHEVASAHSESRGERKTIITRALLGSDAGLYGAARVAVLAV
Ga0302150_1018635013300029956BogAATDPLSGDSLGKEGAAAQTESRTERKTIITRALLGSDAGLYGAARVAVSAG
Ga0302304_1003925233300029993PalsaMFEELRERSLVYAATAPADPLSNSSLGNEGAAVKIESRGERKTIVTRALLGSDAGLYGAARAAVLAG
Ga0302178_1021057523300030013PalsaLVYAATAPADPSITMRTNDASRKEGAAVPTKSRTARRTIIVPALLGSDAGLYGAARAAVLPS
Ga0302181_1028535523300030056PalsaLRERSLVYAATAPPDPLRNGALEKKGASPHTANRRERTTTITRALLGSDAGLYGAARGAMLAG
Ga0302176_1000242013300030057PalsaDPLSNSSLGNEGAAVKIESRGERKTIVTRALLGSDAGLYGAARAAVLAG
Ga0302275_1003929713300030518BogALGKEPGTSAEIESPHERETIVTRALLGSDAGLYGAARAAVLAGVAAV
Ga0311357_1083326623300030524PalsaLVYAATAPPDPLRNGALEKKGASPHTANRRERTTTITRALLGSDAGLYGAARGAMLAG
Ga0311345_1055971623300030688BogPNDPPPGKDALGKEPGTSAEIESPHERETIVTRALLGSDAGLYGAARAAVLAGVAAV
Ga0302310_1016488623300030737PalsaAATAPADPLRSDSVGKAEGAAAQTESRSERKTIITLALLGSDAGLYGAARVAVLAP
Ga0170834_11211378413300031057Forest SoilLVYAATAPDDPLGKKEGASAQIANYTRKKTIITRALLGSDAGLYGAARIPTS
Ga0265760_1013849923300031090SoilLTAPADSLSRALGKEEGAAAPVQSRTEHKTIITRALLGSDAGLYGAARVAVLAG
Ga0310686_11422126513300031708SoilATAPADPLGSDSLGKEEGASAQTESRTERKTIITRALLGSDAGLYGAARVAVPIV
Ga0307476_1017408313300031715Hardwood Forest SoilRERSLIYAATAPHDVLGKDGSAEDKTTNRTRRKTIITRALLGSDAGLYGGARLPLISG
Ga0307476_1031691313300031715Hardwood Forest SoilLVYAATAPADPVMSQGWMSQSSANRAGASAQTESLTERKTIITPALLGSDAGLYGAARVAAVG
Ga0307477_1001354173300031753Hardwood Forest SoilRSLIYAATAPHDVLGKDGSAEDKTTNRTRRKTIITRALLGSDAGLYGGARLPLISG
Ga0302315_1059361023300031837PalsaELRERSLVYAATAPADPLSNSSLGNEGAAVKIESRGERKTIVTRALLGSDAGLYGAARAAVLAG
Ga0306925_1172807913300031890SoilELRERSLVYAASAPEDPTTSKQGASAQIANYTRKKTIITQALLGSDAGLYGAAWMPATQ
Ga0307479_1192514113300031962Hardwood Forest SoilVYAATAPTNPLLSDSLGKEEGASAQTESRTERKTIITRALLGSDAGLYGAARVAVLAG
Ga0307470_1140747013300032174Hardwood Forest SoilERSLVYAATAPEDPLGRDEGASAQVLARTRKKTIITRALLGSDAGLYGAAWIPARA
Ga0335079_1030717933300032783SoilMFAELRERSLVYAASAPDDPTAKKEGASAQIANYTKKKTIITQALLGSDAGLYGAAHVPLMR
Ga0335070_1030643813300032829SoilRERSLVYAATAPDPPSQKEGASAAIKPYTRKKTMITQALLGSDAGLYGAARLPAL
Ga0335071_1129901023300032897SoilERSLVYAASAPEDPNTKKEGAAAHIANYTKKKTIITQALLGSDAGLYGAARVPLMR
Ga0335083_1155650523300032954SoilRSLVYAASAPEDPTAKKEGASAQIANYTKKKTIITQALLGSDAGLYGAAHVPLMQ
Ga0335084_1016222413300033004SoilFAELRDRSLVYAATAPDDPISKKAGASAQIANYTRKKTIITRALLGSDAGLYGAARIPMSQS
Ga0335077_1214397913300033158SoilYAASAPDDPTGKKEGASAQIANYTRKKTIITQALLGSDAGLYGAARIPMS
Ga0326728_1073288313300033402Peat SoilRERSLVYAATAPDDPLGKREGASAEIVNYTRKKTIITRALLGSDAGLYGAARIPAS
Ga0334840_092788_3_1943300033824SoilRQRSVVYAGTAPADPLKSESLGKHEVASAHSESRGERKTIITRALLGSDAGLYGAARVAVLAV
Ga0370514_020111_1468_16173300034199Untreated Peat SoilDPLSSNARGKEGAAAQTESRTERKTIITRALLGSDAGLYGAARVAVSAG


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