Metagenome / Metatranscriptome Family F100759

Basic Information
Family ID	F100759
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	49 residues
Representative Sequence	VGQSVNLATKTITIPSSGSMQFYRIRAGTALTSTSITISGGNVVITYN
Number of Associated Samples	92
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.00 %
% of genes near scaffold ends (potentially truncated)	93.14 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Most Common Taxonomy
Group	Bacteria (59.804 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (30.392 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.176 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 27.63% Coil/Unstructured: 72.37%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00072	Response_reg	3.92
PF00011	HSP20	2.94
PF13205	Big_5	2.94
PF11999	Ice_binding	2.94
PF04333	MlaA	1.96
PF04972	BON	1.96
PF01594	AI-2E_transport	1.96
PF08282	Hydrolase_3	0.98
PF13188	PAS_8	0.98
PF00512	HisKA	0.98
PF05957	DUF883	0.98
PF13450	NAD_binding_8	0.98
PF08085	Entericidin	0.98
PF01740	STAS	0.98
PF02954	HTH_8	0.98
PF11381	DUF3185	0.98
PF00535	Glycos_transf_2	0.98
PF02470	MlaD	0.98
PF02494	HYR	0.98
PF00989	PAS	0.98
PF00106	adh_short	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	2.94
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.96
COG2853	Lipoprotein subunit MlaA of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.96
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.98
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.98
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.98
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.98
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.98
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.98
COG5510	Predicted small secreted protein	Function unknown [S]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	40.20 %
Unclassified	root	N/A	40.20 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	37.25 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	19.61 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	4.90 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.94 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.61 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	4.90 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.94 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.61 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	4.90 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2.94 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.61 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	4.90 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	2.94 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.61 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	4.90 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2.94 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.61 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	4.90 %
Chthoniobacter flavus Ellin428	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	2.94 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090003\|LJN_F7QKVOU01C7D9W	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	515	Open in IMG/M
2088090006\|LWSO2_GGWJX9X01DZEQW	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	520	Open in IMG/M
3300001213\|JGIcombinedJ13530_107476934	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	539	Open in IMG/M
3300001213\|JGIcombinedJ13530_108088515	Not Available	573	Open in IMG/M
3300004139\|Ga0058897_11053128	Not Available	645	Open in IMG/M
3300004693\|Ga0065167_1092953	Not Available	525	Open in IMG/M
3300005294\|Ga0065705_11096074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300005330\|Ga0070690_100173431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1486	Open in IMG/M
3300005330\|Ga0070690_101396471	Not Available	563	Open in IMG/M
3300005340\|Ga0070689_100952248	Not Available	762	Open in IMG/M
3300005440\|Ga0070705_100140771	All Organisms → cellular organisms → Bacteria → Proteobacteria	1587	Open in IMG/M
3300005441\|Ga0070700_100719820	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300005441\|Ga0070700_101574961	Not Available	560	Open in IMG/M
3300005458\|Ga0070681_10710876	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	921	Open in IMG/M
3300005468\|Ga0070707_100992165	Not Available	805	Open in IMG/M
3300005468\|Ga0070707_101344362	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300005537\|Ga0070730_10251530	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300005544\|Ga0070686_100005512	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7006	Open in IMG/M
3300005544\|Ga0070686_100059544	Not Available	2461	Open in IMG/M
3300005563\|Ga0068855_100451216	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300005615\|Ga0070702_101546281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300005617\|Ga0068859_100945080	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	945	Open in IMG/M
3300005843\|Ga0068860_101481451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
3300005843\|Ga0068860_102413180	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300005844\|Ga0068862_101162507	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	769	Open in IMG/M
3300005995\|Ga0066790_10299897	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	685	Open in IMG/M
3300006797\|Ga0066659_11094357	Not Available	666	Open in IMG/M
3300006847\|Ga0075431_102213041	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300009094\|Ga0111539_11020006	Not Available	962	Open in IMG/M
3300009094\|Ga0111539_11384257	Not Available	816	Open in IMG/M
3300009094\|Ga0111539_13384074	Not Available	513	Open in IMG/M
3300009156\|Ga0111538_11031910	Not Available	1040	Open in IMG/M
3300009175\|Ga0073936_10309412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1020	Open in IMG/M
3300009179\|Ga0115028_11232520	Not Available	618	Open in IMG/M
3300009527\|Ga0114942_1335194	Not Available	589	Open in IMG/M
3300009553\|Ga0105249_10993660	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	908	Open in IMG/M
3300009610\|Ga0105340_1214216	Not Available	815	Open in IMG/M
3300009678\|Ga0105252_10187053	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	881	Open in IMG/M
3300010379\|Ga0136449_104244351	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	531	Open in IMG/M
3300010397\|Ga0134124_11368605	Not Available	733	Open in IMG/M
3300010399\|Ga0134127_11153795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	840	Open in IMG/M
3300010403\|Ga0134123_10537346	Not Available	1109	Open in IMG/M
3300010403\|Ga0134123_13279390	Not Available	522	Open in IMG/M
3300011423\|Ga0137436_1154610	Not Available	611	Open in IMG/M
3300011434\|Ga0137464_1263565	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	521	Open in IMG/M
3300011444\|Ga0137463_1287759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	605	Open in IMG/M
3300012035\|Ga0137445_1104821	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	574	Open in IMG/M
3300012199\|Ga0137383_11073019	Not Available	584	Open in IMG/M
3300012202\|Ga0137363_11766017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300012208\|Ga0137376_10799479	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300012209\|Ga0137379_11781707	Not Available	511	Open in IMG/M
3300012210\|Ga0137378_11675354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300012912\|Ga0157306_10226922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	644	Open in IMG/M
3300012922\|Ga0137394_11187966	All Organisms → cellular organisms → Bacteria → PVC group	627	Open in IMG/M
3300012923\|Ga0137359_11051179	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300012925\|Ga0137419_11432863	Not Available	584	Open in IMG/M
3300014165\|Ga0181523_10019073	All Organisms → cellular organisms → Bacteria	4603	Open in IMG/M
3300014493\|Ga0182016_10528711	All Organisms → cellular organisms → Bacteria → PVC group	678	Open in IMG/M
3300014502\|Ga0182021_13754279	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300015245\|Ga0137409_10296587	All Organisms → cellular organisms → Bacteria	1422	Open in IMG/M
3300015245\|Ga0137409_11450496	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300015372\|Ga0132256_102519314	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	616	Open in IMG/M
3300018033\|Ga0187867_10447372	All Organisms → cellular organisms → Bacteria → PVC group	713	Open in IMG/M
3300018057\|Ga0187858_10010637	All Organisms → cellular organisms → Bacteria	7693	Open in IMG/M
3300018468\|Ga0066662_11720322	Not Available	656	Open in IMG/M
3300019248\|Ga0180117_1387231	Not Available	1224	Open in IMG/M
3300020002\|Ga0193730_1166221	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	569	Open in IMG/M
3300021180\|Ga0210396_11360918	Not Available	588	Open in IMG/M
3300021363\|Ga0193699_10249379	Not Available	739	Open in IMG/M
3300021401\|Ga0210393_10781574	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300021404\|Ga0210389_11087575	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	618	Open in IMG/M
3300021420\|Ga0210394_11434191	Not Available	586	Open in IMG/M
3300021859\|Ga0210334_10177493	Not Available	790	Open in IMG/M
3300021951\|Ga0222624_1003992	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300022555\|Ga0212088_10072485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3407	Open in IMG/M
3300024179\|Ga0247695_1047957	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	621	Open in IMG/M
3300024224\|Ga0247673_1055388	Not Available	571	Open in IMG/M
3300024286\|Ga0247687_1057828	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300024317\|Ga0247660_1008403	Not Available	1565	Open in IMG/M
3300025162\|Ga0209083_1031078	All Organisms → cellular organisms → Bacteria	2489	Open in IMG/M
3300025316\|Ga0209697_10232651	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1016	Open in IMG/M
3300025477\|Ga0208192_1074447	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300025679\|Ga0207933_1139667	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300025898\|Ga0207692_11147692	Not Available	515	Open in IMG/M
3300025912\|Ga0207707_10695028	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	854	Open in IMG/M
3300025931\|Ga0207644_11325815	Not Available	605	Open in IMG/M
3300025961\|Ga0207712_10838035	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	810	Open in IMG/M
3300028381\|Ga0268264_12512202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300028587\|Ga0247828_11178705	Not Available	512	Open in IMG/M
3300028800\|Ga0265338_10546082	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300028813\|Ga0302157_10675798	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300029636\|Ga0222749_10091573	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300029982\|Ga0302277_1283245	Not Available	612	Open in IMG/M
3300030551\|Ga0247638_1058535	Not Available	768	Open in IMG/M
3300030841\|Ga0075384_11077462	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	785	Open in IMG/M
3300030854\|Ga0075385_11596615	Not Available	671	Open in IMG/M
3300031122\|Ga0170822_10019788	Not Available	774	Open in IMG/M
3300031524\|Ga0302320_11548168	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300033418\|Ga0316625_101448139	Not Available	647	Open in IMG/M
3300033513\|Ga0316628_101948974	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	781	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.33%
Host-Associated	Host-Associated	16.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.78%
Aquatic	Environmental → Aquatic	22.55%
Plants	Host-Associated → Plants	16.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.88%
Freshwater	Environmental → Aquatic → Freshwater	13.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.86%
Sediment	Environmental → Aquatic → Sediment	5.88%
Peat	Environmental → Terrestrial → Peat	4.90%
Marine	Environmental → Aquatic → Marine	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.27%
Loam	Environmental → Terrestrial → Soil → Loam	14.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.90%
Lake	Environmental → Aquatic → Freshwater → Lake	3.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.96%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.98%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.98%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.90%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.92%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.96%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater Sediment	0.98%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.98%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090003	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN	Host-Associated	Open in IMG/M
2088090006	Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 2	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004693	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009527	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012035	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021859	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.306 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300024317	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01	Environmental	Open in IMG/M
3300025162	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG (SPAdes)	Environmental	Open in IMG/M
3300025316	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes)	Environmental	Open in IMG/M
3300025477	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes)	Environmental	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029982	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1	Environmental	Open in IMG/M
3300030551	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030841	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030854	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LJN_02676700	2088090003	Quercus Rhizosphere	AIGQSLNLSTKTITAPQSGRQQFYRLRATTALTITNITVSGGNVVIKYD
LWSO2_02798510	2088090006	Freshwater Sediment	VTKTITVPESGGMKYYRLKAGTALTIASIRLSGGNVVITYN
JGIcombinedJ13530_1074769342	3300001213	Wetland	TGSYTDAAGQSLNVATKTITVRKSGNMQFYRIRSGSALSITGIRVSGGNVVITYK*
JGIcombinedJ13530_1080885152	3300001213	Wetland	AQSVDPATKTITVPLSVGTQFYRIRAGTALTIKGITIVGGNVVITYN*
Ga0058897_110531282	3300004139	Forest Soil	VNLATKTITSPLSGSMRFYRIRADTALTITGITTSGGNVVITYN*
Ga0065167_10929531	3300004693	Freshwater	NLATKTITVPMSGSIEFYRIWSDTPRTLIAITLSGGNVVITYN*
Ga0065705_110960742	3300005294	Switchgrass Rhizosphere	TKTITVPLSGSMEFYRIRSNTALTITTITISAGNVVITYN*
Ga0070690_1001734312	3300005330	Switchgrass Rhizosphere	GQSVDLATKTITVPLSGNRFYRIRADTAHTITSITIADGAVVISYH*
Ga0070690_1013964711	3300005330	Switchgrass Rhizosphere	SVDESTKTITVPMSGAIQFYRLRSDSAFTITSTKISGGNVILTYN*
Ga0070689_1009522481	3300005340	Switchgrass Rhizosphere	LTTRTITVPLSGNRFYRIQADTALTITSITISGGNAVITYK*
Ga0070705_1001407716	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	SAALVTGPYTDAAGQSVNIATKTIAVPQSGSAQYYRIRSNKALTIAGITISGGNVAIIYN
Ga0070700_1007198202	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	LPNGPYADADGQSVDLATKTITVPLSDNQFYRIRSDTAHTITSITIVDGDVVITYH*
Ga0070700_1015749612	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	ALPNGPYADADGQSVDLATKTITVPLSDNQFYRIRSDTAHTITSITIVDGAVVITFH*
Ga0070681_107108763	3300005458	Corn Rhizosphere	AAGPYTDTLGQSLNPATKTLTGPLSGSMQFYRVRAGTALSITKITVVGGNVAITYN*
Ga0070707_1009921651	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VNLATKTITVPKSGSTQVYRIRSNTALTIQSITVSGGNVVITYN*
Ga0070707_1013443621	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VNLATKTITVPLSGNTQFYRIRAGTALTLNSITIQGGNVVILYN*
Ga0070730_102515301	3300005537	Surface Soil	TDTAGQSLNLATKTITGPLSGSMQFYRVRSGTALSITKITISGGNVAITYN*
Ga0070686_1000055121	3300005544	Switchgrass Rhizosphere	PATMTITVPLSGGMQFYRIRAGTALTITRITISRGQVVLTFN*
Ga0070686_1000595441	3300005544	Switchgrass Rhizosphere	MVTGPYTDAAGQTVNLATKTITVPLSGNTQFYRIRAGTALTLNSITIQGGNVVILYN*
Ga0068855_1004512161	3300005563	Corn Rhizosphere	VSTKTITAPMSGNQQFYRIRAATALTITKITLSGGNVVITYN*
Ga0070702_1015462811	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	TKTITVPVSGSMQFYRIRSGSALTFTGITVSGGNVALTYN*
Ga0068859_1009450801	3300005617	Switchgrass Rhizosphere	AGQSVNLATKTITVPTQGIVQYYRIRSDTALTIMSITISGGNVVITYN*
Ga0068860_1014814512	3300005843	Switchgrass Rhizosphere	VTGPYTDAAGQSVNLATKTITVPTSGAVQYYRIRSDTALTIMSIIISGGNVVITYN*
Ga0068860_1024131801	3300005843	Switchgrass Rhizosphere	TKTITAPRSGSMQFYRIRSGTAVTLRSTTLSAGNIIITYD*
Ga0068862_1011625071	3300005844	Switchgrass Rhizosphere	QSVNLATKTITVPTQGIVQYYRIRSDTALTIMSITISGGNVVITYN*
Ga0066790_102998971	3300005995	Soil	TITVPKSGSRQFYRIRAGTAFTITSISISGGNVVITYD*
Ga0066659_110943572	3300006797	Soil	TGPYTDASGQSLNLATKAITVPLSGSMQFYRIRSTSALTITSITISGANMVITYN*
Ga0075431_1022130411	3300006847	Populus Rhizosphere	TPSMALVSAAVVTGPYTDAFGYLVSPATKTITVPMSGSMQFYRIRSNIAVTITSITISGANVVITYN*
Ga0111539_110200061	3300009094	Populus Rhizosphere	GPYTDATGQSVNLAAKTITVPLSASTQFYRIRAGTALTLTSITISGGNVVITYN*
Ga0111539_113842571	3300009094	Populus Rhizosphere	GQSVDLATKTITVPLSGSRFYRIRSDTAHTITSITIVDGDVVITYH*
Ga0111539_133840742	3300009094	Populus Rhizosphere	GPYADAVGQSINLATKTITVPKSGNVQVYRIRSNTALTIRRITVSGGNVVITYN*
Ga0111538_110319101	3300009156	Populus Rhizosphere	LATKTITVPLSVSAQFYRIRAATALTITGITIQGGNVAITYN*
Ga0073936_103094122	3300009175	Freshwater Lake Hypolimnion	DAPGQSVNLATKTITVPMSGSVKFYRIWSETRRTLTGITLSGGNVVITYN*
Ga0115028_112325202	3300009179	Wetland	GPYTDAIGQVVDPAAKTITVPLSGSSQFYRIRAGKGLTITGITIVGDHVVITHK*
Ga0114942_13351942	3300009527	Groundwater	LLAPALTLVSAAVVSGPYTDAVGQSVNLATKTITAPTSGDMQFYRVRSGTALTIKSITASGGNVVITYN*
Ga0105249_109936601	3300009553	Switchgrass Rhizosphere	DAAGQSVNLATKTITVPTQGIVQYYRIRSDTALTIMSITISGGNVVITYN*
Ga0105340_12142163	3300009610	Soil	AGQSVNLATKTITIPTSGSVQYYRTRSGTALTITNITISGGNVVITYN*
Ga0105252_101870532	3300009678	Soil	MKTITAPLSGSMQFYRIRAGTALTLISITISGGNVVITYN*
Ga0136449_1042443511	3300010379	Peatlands Soil	AIGQSLNLGTETITVPLSGNAQFYRIRSATALTIASISISGGNVVITYH*
Ga0134124_113686052	3300010397	Terrestrial Soil	PLSGNTQFYRIRSNTALTMTSIKISGGNVVITYN*
Ga0134127_111537952	3300010399	Terrestrial Soil	DLATMTITAPLSGGMQFYRIRSNTVLAITSITISAGNVVITYN*
Ga0134123_105373461	3300010403	Terrestrial Soil	SAATLQSAELLTGPYTDAAGQSANLTTKAITVPLSGNRFYRLQADTALTITSITISGGNAVITYR*
Ga0134123_132793901	3300010403	Terrestrial Soil	VLQSAAAVTGTYTDAPGQVVNLATKTITVPLSGSMQFYRIRSDAAHTITSITIADGAVVISYH*
Ga0137436_11546102	3300011423	Soil	VAGQLTNLAMKTVTAPLSGSVQFYRIRSNTASTITSITISDGNVVITFD*
Ga0137464_12635651	3300011434	Soil	IGQSLDLETQTITVPVSGSRQFYRIRAGTTLTITSITLSGGNVVITYN*
Ga0137463_12877592	3300011444	Soil	LTAPLPLSGNVQFYRIKSSTALTITGITISAGNVVITYL*
Ga0137445_11048212	3300012035	Soil	QSVNLETKTITVPMSGNMRFYRIRAGTAFTITSIAISGGTVVITYE*
Ga0137383_110730192	3300012199	Vadose Zone Soil	AAGQSVNLETKTITVPASGSTQYYQIRSSTALTITSITLSGGTVVITYN*
Ga0137363_117660173	3300012202	Vadose Zone Soil	GQSVNLETKTITVPASGGMQYYQIRSSTALTITSITLSGGNVVITYN*
Ga0137376_107994792	3300012208	Vadose Zone Soil	MSIRHTRGLPNGPYTDAAGQSVDLATKTITVPLSDNRFYRIRSDSVHTITSITIADGNVVITYD*
Ga0137379_117817071	3300012209	Vadose Zone Soil	AGSVTGPFTEAVGQSLDLATKTITVPLSGSMGFYRIQAGTALTITRIIISGGNVVITFN*
Ga0137378_116753541	3300012210	Vadose Zone Soil	LESAALLTGPYTDAAGQAVDLATKTITVPMSDNRFYRIRSDTAHTITSITIA
Ga0157306_102269221	3300012912	Soil	ADAAGQSVNVATKTITVPMSGSMRFYRISSGTALTISSITVSGANLAITYQ*
Ga0137394_111879662	3300012922	Vadose Zone Soil	VNLSTKTITVPASGSSAFYRIRSDSVTTITSISKSGGNVVITYN*
Ga0137359_110511791	3300012923	Vadose Zone Soil	SVVTGPYTDASGQSVNLATKTITVPGSGSMQFYRIRSGTALTIKSITVSGGNTVITYN*
Ga0137419_114328631	3300012925	Vadose Zone Soil	DAAGQSVNLAAKTLTVPLSGNSQFYRIRSSTALTITSITVSGGNVVITYL*
Ga0181523_100190732	3300014165	Bog	MTAPLSGSMQFYRIRSATAVAITSITISGGNVVISYE*
Ga0182016_105287112	3300014493	Bog	VVTAPYADTIGQSVDLGTKTFTAPWSGNAQFYRIRSGTVLTIKSITLSGGNVAITYN*
Ga0182021_137542792	3300014502	Fen	PQSGGMRYYRIISGTKLTLTSITSSGGNVVITYE*
Ga0137409_102965871	3300015245	Vadose Zone Soil	VAAGPYTDTSGQSVDPATKTITVPMSGSMQYYRIASATALTITNITISGGNVVITYN*
Ga0137409_114504962	3300015245	Vadose Zone Soil	SAMLPSGPFSDAAGQSLNLATKTITLPKSGNMQFYRLRSTTALTITSITISGANVVITYN
Ga0132256_1025193141	3300015372	Arabidopsis Rhizosphere	GPYTDSLGQSVNLATKTITVPKSGNTQFYQLRAATTLTITSITLSGGNVVITYY*
Ga0187867_104473721	3300018033	Peatland	PYSDSIGQSVNLETKTMTAPLSGSMQFYRIRSATAVAITSITISGGNVVISYE
Ga0187858_100106373	3300018057	Peatland	MTAPLSGSMQFYRIRSATAVAITSITISGGNVVISYE
Ga0066662_117203221	3300018468	Grasslands Soil	KTITVPKSGGMQFYRIRAGTALTITGITISGTNVIITHN
Ga0180117_13872311	3300019248	Groundwater Sediment	ITVPQSGSMRFYRIRSGTGLTITGITISGSNVVVTYN
Ga0193730_11662211	3300020002	Soil	VNLETKTITVPISGNMRFYRILGNTAFTITSIAISGGTVVITYD
Ga0210396_113609182	3300021180	Soil	TYDSGHSVNLATKTITSPLSGSMRFYRIRADTALTITGITTSGGNVVITYN
Ga0193699_102493791	3300021363	Soil	SLDLATKTISAPLSDSMRFYRIRAGTALTISRITISGGNVVITYN
Ga0210393_107815742	3300021401	Soil	STITVPKSGNAQFYRIQSSTALDITTIAISGGNVVITYN
Ga0210389_110875751	3300021404	Soil	AALVTGPYVDAIGQSLNSSTKTITAPLSGSQQFYRIRAATALTITKITLSGGYVVITYN
Ga0210394_114341911	3300021420	Soil	KTLTVPRSGSAQFYRIQSNTTLTITRIAISGGSLVITYN
Ga0210334_101774931	3300021859	Estuarine	VNLATKTITIPASGSMQFYRTRSGTALTITSITLSGGNVVITYN
Ga0222624_10039922	3300021951	Groundwater Sediment	EAATGPYTDATGQSLDLATKTISAPLSGSMRFYRIRAGTALTINRITISGGNVVITYN
Ga0212088_100724851	3300022555	Freshwater Lake Hypolimnion	VSAALVTGPYTYAPGQSVNLATKTITVPQSGAMQFYRVRSDTALAMASIRISGGNVVITY
Ga0247695_10479571	3300024179	Soil	TDTAGQSLNLATKAITVPLSGTMQFYRVRSTTALTIASITISGANVVITYH
Ga0247673_10553881	3300024224	Soil	ATKAITVPLSGSMQFYRVRSGTALTITNISISAGNVVITYN
Ga0247687_10578281	3300024286	Soil	PYTVAAGQSTGLAIKTITAPLSGSTQFYRIRSNTAVTITGITISGGNVVITYE
Ga0247660_10084032	3300024317	Soil	YTDALGQVPNLATKTITVPLSGSMEFYRIRSNTAVTITTITISAGNVVITYN
Ga0209083_10310784	3300025162	Freshwater	LVTGPYTYAPGQSVNLATKTITVPQSGAMQFYRVRSDTALAMASIRISGGNVVITYH
Ga0209697_102326511	3300025316	Freshwater Lake Hypolimnion	PGQSVNLATKTITVPMSGSVKFYRIWSETRRTLTGITLSGGNVVITYN
Ga0208192_10744471	3300025477	Peatland	LVSAAVVTDPYTYASGQSVNLATKTITVPRSGSMQYYRIMSATALTITSITISGGNVVITYN
Ga0207933_11396671	3300025679	Arctic Peat Soil	SDAIGQSLNPGTETITVPLSGSTQFYRIRSVTALTIKSITTSGGNVVITYH
Ga0207692_111476921	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PYTDAAGQSLNLTTKAITVPLSGSMQFYRIRSTAALTITRITISGANVVITYQ
Ga0207707_106950283	3300025912	Corn Rhizosphere	SLNPATKTLTGPLSGSMQFYRVRAGTALSITKITVVGGNVAITYN
Ga0207644_113258151	3300025931	Switchgrass Rhizosphere	QSANLTTKTITVPLSGNRFYRILADTALTITSITISGGNAVITYR
Ga0207712_108380352	3300025961	Switchgrass Rhizosphere	DAAGQSVNLATKTITVPTQGIVQYYRIRSDTALTIMSITISGGNVVITYN
Ga0268264_125122021	3300028381	Switchgrass Rhizosphere	VTGPYTDAAGQSVNLATKTITVPTSGAVQYYRIRSDTALTIMSIIISGGNVVITYN
Ga0247828_111787052	3300028587	Soil	AAVTLVSATVVTGPYTDAVGQSVNLATKTITAPMSGDIRFYRIRSGAALTVKSITASGGNVFITYN
Ga0302202_102288442	3300028762	Bog	LNSGTQTMKVLMSGSTQFYRILSRTAATITNLTISGGNVVITYQ
Ga0265338_105460821	3300028800	Rhizosphere	NLETKTITVPMSGNMRFYRIMAGMTFTITSITISGGNVVIAYN
Ga0302157_106757982	3300028813	Bog	HSVNLLTKTITVPESAQVGYYRIISGTKFTITAITLSGGNVVITYN
Ga0222749_100915733	3300029636	Soil	HSVNLATKTITSPLSGSMRFYRIRADTALTITGITTSGGNVVITYN
Ga0302277_12832452	3300029982	Bog	GPYLDAIGQSVNLATHTISVPLSESAQFYRIRSVTVLTIGTITISGGNLIITYK
Ga0247638_10585352	3300030551	Soil	VGQSVNLATKTITIPSSGSMQFYRIRAGTALTSTSITISGGNVVITYN
Ga0075384_110774623	3300030841	Soil	AGQSVNLATKTITVPLSGSMQFYRIRSGTALIIKSLTISGGNAVITFN
Ga0075385_115966153	3300030854	Soil	GQSVNLATKTITVPMSGSMQFYRIRSGTALTIKNLTISGGNAVITFN
Ga0170822_100197881	3300031122	Forest Soil	SATLQSASAANGPFTDAVGQSVNLATKTITVPMSGSMQFYRIRSGTALTIKNLTISGGNAVITFN
Ga0302318_101263151	3300031258	Bog	NSGTQTMKVLMSGSTQFYRILSRTAATITNLTISGGNVVITYQ
Ga0302320_115481681	3300031524	Bog	PYLDAVGQSVNLVTKTITVPRSGNTQFYRIRSETMVTISSLVISSGNVVIIYK
Ga0316625_1014481391	3300033418	Soil	NGPYTDAIGQVVDPAAKTITVPLSGSSQFYRIRAGKGLTITGITIVGDHVVITHK
Ga0316628_1019489742	3300033513	Soil	LATKTITVPKSGSMQFYRIRAGTGLIITRITISGGNVVITYE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100759

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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