NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F089460

Metagenome / Metatranscriptome Family F089460

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089460
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 72 residues
Representative Sequence KILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGNILIEHPSSAPDPAKLKAAYTSYLEKLKLAD
Number of Associated Samples 89
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 11.11 %
% of genes near scaffold ends (potentially truncated) 7.34 %
% of genes from short scaffolds (< 2000 bps) 7.34 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (91.743 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(31.193 % of family members)
Environment Ontology (ENVO) Unclassified
(31.193 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.046 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.39%    β-sheet: 0.00%    Coil/Unstructured: 53.61%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF02517Rce1-like 29.36
PF00719Pyrophosphatase 2.75
PF00076RRM_1 2.75
PF01797Y1_Tnp 2.75
PF00903Glyoxalase 1.83
PF07786HGSNAT_cat 1.83
PF07642BBP2 1.83
PF01914MarC 1.83
PF03972MmgE_PrpD 1.83
PF01070FMN_dh 0.92
PF02687FtsX 0.92
PF12681Glyoxalase_2 0.92
PF01135PCMT 0.92
PF028725_nucleotid_C 0.92
PF01740STAS 0.92
PF04972BON 0.92
PF00221Lyase_aromatic 0.92
PF00034Cytochrom_C 0.92
PF05690ThiG 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG4449Predicted protease, Abi (CAAX) familyGeneral function prediction only [R] 29.36
COG1266Membrane protease YdiL, CAAX protease familyPosttranslational modification, protein turnover, chaperones [O] 29.36
COG0221Inorganic pyrophosphataseEnergy production and conversion [C] 2.75
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 2.75
COG20792-methylcitrate dehydratase PrpDCarbohydrate transport and metabolism [G] 1.83
COG3503Uncharacterized membrane protein, DUF1624 familyFunction unknown [S] 1.83
COG2095Small neutral amino acid transporter SnatA, MarC familyAmino acid transport and metabolism [E] 1.83
COG2022Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis)Coenzyme transport and metabolism [H] 0.92
COG2070NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase familyGeneral function prediction only [R] 0.92
COG0069Glutamate synthase domain 2Amino acid transport and metabolism [E] 0.92
COG1304FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomeraseEnergy production and conversion [C] 0.92
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 0.92
COG2518Protein-L-isoaspartate O-methyltransferasePosttranslational modification, protein turnover, chaperones [O] 0.92
COG2519tRNA A58 N-methylase Trm61Translation, ribosomal structure and biogenesis [J] 0.92
COG2986Histidine ammonia-lyaseAmino acid transport and metabolism [E] 0.92
COG07372',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase familyDefense mechanisms [V] 0.92
COG4122tRNA 5-hydroxyU34 O-methylase TrmR/YrrMTranslation, ribosomal structure and biogenesis [J] 0.92
COG0214Pyridoxal 5'-phosphate synthase subunit PdxSCoenzyme transport and metabolism [H] 0.92


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A91.74 %
All OrganismsrootAll Organisms8.26 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090003|LJN_F7QKVOU01BALS3All Organisms → cellular organisms → Bacteria → Acidobacteria514Open in IMG/M
3300004082|Ga0062384_100697093All Organisms → cellular organisms → Bacteria → Acidobacteria699Open in IMG/M
3300005471|Ga0070698_100098045All Organisms → cellular organisms → Bacteria2906Open in IMG/M
3300012363|Ga0137390_10863471All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium861Open in IMG/M
3300021476|Ga0187846_10353683All Organisms → cellular organisms → Bacteria → Acidobacteria606Open in IMG/M
3300025906|Ga0207699_10406021All Organisms → cellular organisms → Bacteria → Acidobacteria971Open in IMG/M
3300027629|Ga0209422_1079345All Organisms → cellular organisms → Bacteria → Acidobacteria769Open in IMG/M
3300031713|Ga0318496_10713381All Organisms → cellular organisms → Bacteria → Acidobacteria553Open in IMG/M
3300031941|Ga0310912_11059649All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium620Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil31.19%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil14.68%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil11.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.17%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil7.34%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.50%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.67%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.75%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.83%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.83%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.83%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.92%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.92%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.92%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.92%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.92%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.92%
Quercus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere0.92%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090003Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJNHost-AssociatedOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000724Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29EnvironmentalOpen in IMG/M
3300001137Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022506Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022531Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026490Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-AEnvironmentalOpen in IMG/M
3300026869Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53 (SPAdes)EnvironmentalOpen in IMG/M
3300026895Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)EnvironmentalOpen in IMG/M
3300026981Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)EnvironmentalOpen in IMG/M
3300026984Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)EnvironmentalOpen in IMG/M
3300027014Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027381Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027629Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027633Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300030847Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LJN_023609202088090003Quercus RhizosphereQLAYAASQKGDYGSAATLAVILERTWDKAEDYGGDTALSKTNHALFDQIDKAMDSFIAVFLDHPTSAPDAAKLKAAYALYLEKLKLAD
INPhiseqgaiiFebDRAFT_10486656423300000364SoilAAKLARILERNWDKAEDYGGETALSKTNHALFDEIDKAMDRFISPLVAHPNSAPDAAIVKAAYNAYIERLKQAD*
JGI12581J11935_10272413300000724Tropical Forest SoilLAKILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGNMLIDHPNSAPDQAKLKAAYTYYLEKLKLGD*
JGI12637J13337_102888023300001137Forest SoilGGDTALSKKNHALFEEIDKSMDQFISLLLEHSASAPDAAKLKSAYAQYLEKLKLGD*
JGI12635J15846_1051983713300001593Forest SoilLERTWDKAEDYGGDTALSKTNHAVFDQIDKAMDQFITLFLEHQTSAPDAAKLKAAYAQYLEKLKLAD*
JGIcombinedJ26739_10127795023300002245Forest SoilAASQKGDHASAATLAKILERMWDKAEDYGGDTALSKTNHAVYEQIDKAMDQFISVFLEHPSAAPDAAKLKVAYGYYLEKLKLAD*
JGIcombinedJ26739_10147385523300002245Forest SoilGGDTALSKTNHALFEQIDKAMDQFISLFLDHPAAGPDPAKLKSAYSQYLEKLKLAD*
JGIcombinedJ26739_10165213423300002245Forest SoilGDNAGAARLARILERTWDKAEDYGGETALSKTNHALYEEIDKAMDHFISPLVAHPSAAPDAAALKAAYNGYLEKLKQAD*
Ga0062384_10069709313300004082Bog Forest SoilQLAFSASQKGDNATAATLAKVLERTWDKAEDYGGDTALSKTNHALFAEVDKAMDQFITMLLDHAASAPDPAKLKLAYGTYLEKLKLAD*
Ga0066388_10119459613300005332Tropical Forest SoilTLAKILERTWDKSEDYGGDTALSRTNHALFEEIDKAMDQFVNLLMEHQASAPDPAKLKAVYTAYLEKLRRAD*
Ga0008090_1581146733300005363Tropical Rainforest SoilFASSQKGDNATARTLAKILERTWDKSEDYGGDTALSRTNHALFEEIDKAMDQFVNLLMEHQASAPDPAKLKAVYTAYLEKLRRAD*
Ga0070709_1047569633300005434Corn, Switchgrass And Miscanthus RhizosphereVAYAASQKGEYATAATLAKVLERTWDKAEDYGGDMALSKTNHALFEDIDKAMDQFVTLLMDHPTSAADPARVKTAYNAYLEKLKQAD*
Ga0070698_10009804513300005471Corn, Switchgrass And Miscanthus RhizosphereAQLSYAASQKGDHALAAKLARILERNWDKAEDYGGETALSKTNHALFDEIDKAMDRFITPLVAHPTSAPDAALVKAAYNAYLEKLKQAD*
Ga0070715_1039304723300006163Corn, Switchgrass And Miscanthus RhizosphereWDKAEDYGGDTALSKTHHALFEQIDKAMDQFIALFVEHPSSPSDAAKLKTAYTQYLEKLKLAD*
Ga0070712_10005821413300006175Corn, Switchgrass And Miscanthus RhizosphereLSYAASQKGDNALAAKLARILERNWDKAEDYGGETALSKTNHALFDEIDKAMDRFISPLVAHPTSAPDAAILKAAYNAYLERLKQAD*
Ga0073928_1035379813300006893Iron-Sulfur Acid SpringQKGDSSSAATLAKILERTWDKAEDYGGDTALSKTNKSLFDQIDKAMDQFINVLTEHPNSAPDSAKLKAAYSAYLEKLKLAD*
Ga0099795_1033183013300007788Vadose Zone SoilKTNHALFDQIDKAMDQFIAVFLDHPTSAPDAAKLKAAYALYLEKLKLAD*
Ga0126373_1156251223300010048Tropical Forest SoilKTNHALFEQIDKAMDQFINLLTEHATSAPDAAKVKAAYSAYIEKLKLAD*
Ga0137393_1094818023300011271Vadose Zone SoilGGDTALSKTNHALFDQVDKAMDQFIAVFLDHPTSAPDAAKLKAVYTLYLEKLKLAD*
Ga0137388_1119475523300012189Vadose Zone SoilLERTWDKAEDYGGDTALSKTNNAVYEQIDKAMDQFISMFLDHPSAAPDAARLKVAYNLYLEKLKLAD*
Ga0137363_1029364913300012202Vadose Zone SoilNTNAATLAKILERTWDKSEDYGGDTALSKTNKKLFDEVDKAMDQFVSLLVDHPTSAPDPARLRAAYTNYLEKLKSAD*
Ga0137363_1105491713300012202Vadose Zone SoilWDKAEDYGGDTALSKTNHALFDQIDKAMDQFIAILIEHSSSAPDSAKLKSLYTHYLEKLKLAD*
Ga0137390_1086347123300012363Vadose Zone SoilYADFQKGDLAAAALMAKALERVWDKAEDYGGDTALAKTNHGLFEQIDKAMDEFLSLITDAKGKPPDPAKVKAAYSAYLEKLKLAD*
Ga0137358_1064734413300012582Vadose Zone SoilYAASQKGDNAGAAMLAKILERTWDKAEDYGGDTALSRKNRALFEQVDKAMDQFISLFLDHPASAPEAAKLKATYALYLEKLKLAD*
Ga0137358_1072725113300012582Vadose Zone SoilYANAATLAVILERTWDKAEDYGGDTALSKTNHALFNQIDKAMDQLISLFLDHQTSAPDAAKLKAAYSLYLEKLKMGD*
Ga0137396_1016961513300012918Vadose Zone SoilRTWDKAEDYGGDTALSKTNHALFDQIDKAMDQFIAVFLDHPTSAPDAAKLKAAYALYLEKLKLAD*
Ga0137396_1027593013300012918Vadose Zone SoilRTWDKAEDYGGDTALSKTNHALFDQIDKAMDQLISLFLDHQTSAPDAAKLKAAYSTYLEKLKLAD*
Ga0137396_1121876113300012918Vadose Zone SoilDTALSKTNHAVYEQIDKAMDQFIAVFLDHPSAAPDAAKLKAAYAQYLEKLKLAD*
Ga0137359_1160323613300012923Vadose Zone SoilRRDWSSIEPYRRRSLRTWDKAEDYGGDTALSKTNHVLFNQIDKAMDQLISLFLDHQTSAPDAAKLKAAYSLYLEKLKMGD*
Ga0137416_1098838023300012927Vadose Zone SoilNHALFDQVDKAMDQFIAVFLDHPTSAPDAAKLKAVYTLYLEKLKLAD*
Ga0181534_1034754633300014168BogSKTNHDLFDQIDKAMDQFINLIEHAGTTPDLSTIKAAYNSYLDKLKLAD*
Ga0137420_108417523300015054Vadose Zone SoilDYGGDTALSKTNHALFDQIDKAMDQLISLFLDHQTSAPDAAKLKAAYSTYLEKLKLAD*
Ga0137420_139941423300015054Vadose Zone SoilVILERTWDKAEDYGGDTALSKTNHVLFDQIDKAMDQFIAVFLDHPTSAPEAVKLKAAYALYLEKLKLAD*
Ga0182032_1157420823300016357SoilSQKGDNATAATLAKILERTWDKSEDYGGDTALSRTNHALFDEIDKAMDQFVNLLMAHQASAPDPAKLKAVYTAYLEKLRRAD
Ga0182040_1006134333300016387SoilWDKSEDYGGDTALSKTNHALFDEIDKAMDQFVNLLVEHQTSAPDSAKLKAVYNAYLEKLKRAD
Ga0182039_1057605613300016422SoilLAKILERTWDKSEDYGGDTALSKTNHALFDEIDKAMDQFVNLLVEHQTSAPDSAKLKAVYNAYLEKLKRAD
Ga0182039_1155365223300016422SoilAFASSQKGDNATAATLAKILERTWDKSEAYGGDTAFSKTNNALLDEIDKAMDQFVNLLVEHQTSAPDSAKLKAVYNAYLEKLKRAD
Ga0182038_1215167423300016445SoilKGDNATAATLAKILERTWDKSEDYGGDTALSKTNHALFDEIDKAMDQFVNLLVEHQTSAPDSVKLKAVYNAYLEKLKRAD
Ga0181505_1087576913300016750PeatlandATAATLAKILERTWDKAEDYGGDTALSKTNRALFDQVDKAMDTFITHLMEHQNSASDPAQLKIAYASYLEKLRLAD
Ga0187814_1011631713300017932Freshwater SedimentMLAKVLERTWDKGEDYGGDTALSKTNRALFDEIDKAMDQFINLLLAHPNAASDPAKLKAAYCTYLEKLKLAD
Ga0187804_1003161913300018006Freshwater SedimentKILERTWDKGEDYGGDMALSKTNHARFDEVDKAMDQFITLLIEHQNSAPDPAKLKALYTNYLEKLKLAD
Ga0187766_1058824713300018058Tropical PeatlandQKGDHATAAMLAKILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGIMLIEHINSGPDQAKLKAAFTNYLEKLKLAD
Ga0210407_1014346513300020579SoilAASQKGDNATAATLAKALERVWDKAEDYGGDTALAKTNRALFDQIDKAMDVFITLLTDHPASAPDAAKVKAAYNLYLEKLRLAD
Ga0210407_1047156423300020579SoilDKAEDYGGDTALSKTNHALFEQIDKAMDQFISLFLDHPAAGPEPAKLKSAYSQYLEKLKLAD
Ga0210403_1081161523300020580SoilYATAATLAKVLERTWDKGEDYGGDMALSKTNHALFEDIDKAMDQFVTLLMDHPTSAADPARVKTAYNAYLEKLKQAD
Ga0210403_1097145113300020580SoilAKILERTWDKAEDYGGDTALSKTNHDVFEQIDKAMDQFITLLLDHPSSAPDVTKLKATYSLYLEKLNLAD
Ga0179596_1021892013300021086Vadose Zone SoilSQKGDNALAAKLARILERNWDKAEDYGGETALSKTNHALFEEIDKAMDRFISPLVAHPTSTPDAALLKAAYHAYLEKLKQAD
Ga0210406_1044631223300021168SoilEASQKGEGPTAAKLARVLERTWDKAEDYGGDMALSKTNHALFEQIDKAMDQFISLLQHASPERNAVQSAYNTYLEKLKLAD
Ga0210406_1052508313300021168SoilASQKGDHVGAATLAKILERTWDKAEDYGGDTALSKTNHALFEQIDKAMDQFISLFLDHPAAGPDPAKLKSAYSQYLEKLKLAD
Ga0210400_1018886133300021170SoilLSKTNNAIYEQIDKAMDQFISLFLDHPSAAPDAARLKVAYNLYLEKLKLAD
Ga0210400_1139416813300021170SoilGDHAGAATLAKILERTWDKAEDYGGDTALSKTNHAIFDQVDKAMDQFISLFLDHPTSAPDPAKLKIAYTQYLEKLKLAD
Ga0210405_1010097313300021171SoilDLFEQVDKAMDVFITLLVEHPNSAPDAAKVRAAYNAYIEKLKLAD
Ga0210405_1130626923300021171SoilVAASQKGDNATAAELARILERTWDKAEDYGGDTALSKTNRPLFDQIDKAMDQFIAILVDHATSSPDASKLKAAYTVYLEKLKLAD
Ga0210408_1002966963300021178SoilLTVAASQKGDNATAAELARILERTWDKAEDYGGDTALSKTNRGLFDQIDKAMDQFIAIFIEHPNTAPDSAKLKALYATYLEKLKLAD
Ga0210387_1062074423300021405SoilFNASQKGDNSTAATLAKILERTWDKSEDYGGDTALSKTNKKLFDELDKAMDQFVSLLVDHPTSAPDAARLRAAYTNYIDKLKEAD
Ga0210386_1130299513300021406SoilLARVLERTWDKAEDYGGDTALSKTNHALFDQIDKAMDQFISILIDHANSAPDSAKLKAAYAAYMEKLKLAD
Ga0187846_1035368323300021476BiofilmARVLERVWDKAEDYGGDTALSKSNHALFEEIDKAMDRFVAPLMEYKTKPADAAKVKAAYNAFLEKLRKAD
Ga0210402_1053152933300021478SoilALSKTNHALFEQIDKSMDQFISILIDHANSAPDAAKLKAAYAAYMEKLKLAE
Ga0210402_1115607623300021478SoilNATAATLAKILERTWDKSEDYGGDTALSKTNKRLFDEVDKAMDQFVSLLAEHPTAAPDPARLRAAYTNYLDKLKAAD
Ga0210409_1056388213300021559SoilATLAFNASQKGDNATAATLAKVLERTWDKSEDYGGDTALSKTNKKLFEELDKAMDQFVSLLVEHATTAPDPARLRAAYTNYLEKLKEAD
Ga0242648_107830213300022506SoilATLAKILERTWDKAEDYGGDTALSKTNHAVYEQIDKAMDQFISVFLDHPSAAPDAAKLKVAYGYYLEKLKLAD
Ga0242660_114560413300022531SoilAELARILERTWDKAEDYGGDTALSKTNRGLFDQIDKAMDQFIAMLVDHATSSPDASKLKAAYTAYLEKLKLAD
Ga0242662_1018956713300022533SoilARILERTWDKAEDYGGDTALSKTNHALFEQIDKSMDQFISILIDHANSAPDAAKLKAAYAAYMEKLKLAE
Ga0212123_1042922013300022557Iron-Sulfur Acid SpringAKILERTWDKAEDYGGDTALSKTNKSLFDQIDKAMDQFINVLTEHPNSAPDSAKLKAAYSAYLEKLKLAD
Ga0207685_1045076513300025905Corn, Switchgrass And Miscanthus RhizosphereWDKAEDYGGDTALSKTHHALFEQIDKAMDQFIALFVEHPSSPSDAAKLKTAYTQYLEKLKLAD
Ga0207699_1040602113300025906Corn, Switchgrass And Miscanthus RhizosphereAQVAYAASQKGEYATAATLAKVLERTWDKAEDYGGDMALSKTNHALFEDIDKAMDQFVTLLMDHPTSAADPARVKTAYNAYLEKLKQAD
Ga0257153_108501723300026490SoilYAASQKGDNALAAKLARILERNWDKAEDYGGETALSKTNHALYDEIDKAMDRFISPLVAHPTAAPDAAVVKAAYTAYLERLKQAD
Ga0207821_102180923300026869Tropical Forest SoilILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGNMLIDHPNSAPDQAKLKAAYTYYLEKLKLGD
Ga0207758_101292223300026895Tropical Forest SoilISLKGDNATAATLAKILERTWDKSEDYGGDTALSKTNHALFDEIDKAMDQFVNLLVEHQTSAPDSAKLKAVYNAYLEKLKRAD
Ga0207758_102707513300026895Tropical Forest SoilKILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGNILIEHPSSAPDPAKLKAAYTSYLEKLKLAD
Ga0207822_103677723300026981Tropical Forest SoilKILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGNILIEHASSAPDQAKLKAAYTSYLEKLKLAD
Ga0208732_102722823300026984Forest SoilRTWDKAEDYGGDTALSKTNHALFEQIDKAMDQFISLFLEHPAGPPDASKLKSAYTQYLEKLKLAD
Ga0207815_101965323300027014Tropical Forest SoilAKILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGNILIEHASSAPDQAKLKAAYTSYLEKLKLAD
Ga0208983_103368513300027381Forest SoilLAAKLARILERDWDKAEDYGGDAALSKTNHALFEEIDKAMDHFIAPLVAHVSSPPDQAAVKAAYNAYLEKLKLAD
Ga0209422_107934513300027629Forest SoilMTVSWVSLQRTPRSFNASQKGDNASAATLAKILERTWDKSEDYGGDTALSKTNKKLFDEIDKAMDQFVSLLVEHPTAAPDPARLRAAYTNYLDKLKAAD
Ga0208988_105560623300027633Forest SoilERTWDKAEDYGGDTALSKTNHALFDQVDKAMDAFIAVFLDHPTSAPDGAKLKTSYALYLEKLKLAD
Ga0209217_113047023300027651Forest SoilALSKTNHAIYEQVDKAMDQFIALFLDHPSSAPDAAKLKAAYTLYLEKLKLAD
Ga0209009_103345733300027667Forest SoilSKTNHALFEEVDKAMDSFVNLLIEHVSSAPDAAKLKSAYAAYLEKLKQAD
Ga0207862_101180013300027703Tropical Forest SoilGDTALSKTNHALFEEIDKAMDQFGNMLIDHPNSAPDQAKLKAAYTYYLEKLKLGD
Ga0209038_1018524013300027737Bog Forest SoilYGGDTALSKTNHALFDQIDKAMDQFISILIDHANSAPDGTKLKAAYTAYMEKLKLAD
Ga0209040_1011420113300027824Bog Forest SoilFAASQKGDNATAATLAKVLERLWDKAEDYGGDTALSKTNRARFDEIDKAMDQFIALLIDHPNSAPDPARLKAVYTAYLDKLKLAD
Ga0209040_1016537923300027824Bog Forest SoilMAQKGEYASAATLAKVLERTWDKGEDYGGDMALSKTKHALFEEIDKAMDQFVILLIDHPTSPADPARLKVAYNGYLDKLKLAD
Ga0209380_1034055223300027889SoilLARILERTWDKAEDYGGDMALSKTNHALFEQIDKAMDQFITLLQHASPERNAVQSTYNTYLEKLKLAD
Ga0209526_1010346943300028047Forest SoilRTWDKAEDYGGDTALSKTNHAVYEQIDKAMDQFISVFLEHPSAAPDAAKLKVAYGYYLEKLKLAD
Ga0209526_1039560513300028047Forest SoilTALSKTNHAIYEQVDKAMDQFIALFLDHPSSAPDAAKLKAAYTLYLEKLKLAD
Ga0075405_1170462013300030847SoilALAKVLERTWDKSEDYGGDMALSKTNHALFEDIDKAMDQFVSLLMDHPTSAADPARVKTAYNAYLEKLKLAD
Ga0170834_11082800613300031057Forest SoilALSKTNHALFEDIDKAMDQFVSLLMDHPTSAADPARVKTAYNAYLEKLKLAD
Ga0170824_10008698213300031231Forest SoilGEYATAATLAKVLERTWGKGEDYGGDMALSKTNHALFENIDKAMDQFVTLLMDHPTSAADPARVKTAYNAYLEKLKQAD
Ga0170824_12285141313300031231Forest SoilDKGEDYGGDMALSKTNHALFEDIDKAMDQFVSLLMDHPTSAADPARVKTAYNAYLEKLKLAD
Ga0318538_1023027723300031546SoilQKGDNSTAATLAKILERTWDKGEDYGGDTALSKTKHALFEEIDKAMDQFVNPLIEHTNSAPDPVKVKVAYTAYLEKLKLAD
Ga0318528_1065511213300031561SoilATAATLARILERTWDKSEDYGGDTALSRTNHALFDEIDKAMDQFVNLLMEHQASAPDPAKLKAVYTAYLEKLRRAD
Ga0318515_1024435023300031572SoilLERTWDKSEDYGGDTALSRTNHALFDEIDKAMDQFVNLLMEHQASAPDPAKLKAVYTAYLEKLRRAD
Ga0318496_1071338113300031713SoilLAQLAFASSQKGDNATAATLAKILERTWDKSEDYGGDTALSRTNHALFDEIDKAMDQFVNLLMEHQASAPDPAKLKAAYTAYLEKLRRAD
Ga0306917_1095737813300031719SoilLAKVLERTWDKGEDYGGDMALSKTNHALFEDIDKAMDQFVILLMDHPTSAADPTRVKTAYNAYLEKLKQAD
Ga0307469_1164954713300031720Hardwood Forest SoilTAAALAKVLERTWDKGEDYGGDMALSKTNHALFEDIDKAMDQFVTLLMDHPTSAADPARVKTAYNAYLEKLRQAD
Ga0318493_1032689913300031723SoilAATLARILERTWDKSEDYGGDTALSRTNHALFEEIDKAMDQFVNLLMEHQASAPDPAKLKAVYTAYLEKLRRAD
Ga0318500_1073119223300031724SoilAYAASQKGDNATAAMLAKILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGNLLIEHPSSAPDQAKLKAAYSNYLEKLRLAD
Ga0318501_1068557113300031736SoilATAATLAKILERTWDKSEDYGGDTALSRTNHALFDEIDKAMDQFVNLLMAHQASAPDPAKLKAVYTAYLEKLRRAD
Ga0318494_1005361533300031751SoilDKSEDYGGDTALSRTNHALFDEIDKAMDQFVNLLMEHQASAPDPAKLKAVYTAYLEKLRRAD
Ga0307473_1020580913300031820Hardwood Forest SoilMQPQPLSRKSSNAPGEDYGGDMALSKTNHALFEDIDKAIDQFVTLLMDHPTSAADPARVKTAYNAYLEKLKLAD
Ga0318544_1023106923300031880SoilILERTWDKSEDYGGDTALSRTNHALFEEIDKAMDQFVNLLMEHQASAPDPAKLKAVYRAYLEKLRRAD
Ga0318544_1031930723300031880SoilSSQKGDNATAATLAKILERTWDKSEDYGGDTALSKTNHALFDEIDKAMDQFVNLLVEHQTSAPDSAKLKAVYNAYLEKLKRAD
Ga0306925_1145764223300031890SoilVLERTWDKGEVYGGDMALSKTNHALFEDIDKAMDQFVILLMDHPTSAADPTRVKTAYNAYLEKLKQAD
Ga0318551_1080080313300031896SoilILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGNLLIEHPSSAPDQAKLKAAYSNYLEKLRLAD
Ga0310912_1105964913300031941SoilLARLAFASSQKGDNATAATLAKILERTWDKSEDYGGDTALSKTNHALFDEIDKAMDQFVNLLVEHQTSAPDSAKLKAVYNAYLEKLKRAD
Ga0310909_1108430713300031947SoilERTWDKGEDYGGDMALSKTNHALFEDIDKAMDQFVILLMDHPTSAADPTRVKTAYNAYLEKLKQAD
Ga0306924_1046373413300032076SoilDTALSKTNHALFEEIDKAMDQFGNLLIEHPSSAPDQAKLKAAYSNYLEKLRLAD
Ga0306920_10037095213300032261SoilGDNATAAMLAKILERTWDKAEDYGGDTALSKTNHALFEEIDKAMDQFGNLLIEHPSSAPDQAKLKAAYSNYLEKLRLAD
Ga0306920_10194849013300032261SoilTLAKILERTWDKSEDYGGDTALSRTNHALFEEIDKAMDQFVNLLMEHQASAPDPAKLKAVYRAYLEKLRRAD


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