Metagenome / Metatranscriptome Family F099328

Overview

Basic Information

• Family ID: F099328
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 103
• Average Sequence Length: 41 residues
• Representative Sequence: RIIQAGTADACFVFFNRRIFLGEDLRAAIVVQARRALFK
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 103

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 6.80 %
• % of genes from short scaffolds (< 2000 bps): 2.91 %
• Associated GOLD sequencing projects: 87
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (93.204 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine (15.534 % of family members)
• Environment Ontology (ENVO): Unclassified (63.107 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (62.136 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 46.27%
  β-sheet: 0.00%
  Coil/Unstructured: 53.73%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00293	NUDIX	62.14
PF02965	Met_synt_B12	14.56
PF01198	Ribosomal_L31e	9.71
PF02219	MTHFR	6.80
PF02574	S-methyl_trans	1.94
PF13404	HTH_AsnC-type	0.97
PF02607	B12-binding_2	0.97
PF00589	Phage_integrase	0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1410	Methionine synthase I, cobalamin-binding domain	Amino acid transport and metabolism [E]	14.56
COG2097	Ribosomal protein L31E	Translation, ribosomal structure and biogenesis [J]	9.71
COG0685	5,10-methylenetetrahydrofolate reductase	Amino acid transport and metabolism [E]	6.80
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	1.94
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	1.94

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
All Organisms	root	All Organisms	6.80 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
cellular organisms	root	All Organisms → cellular organisms	6.80 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.80 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	5.83 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	5.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	5.83 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	5.83 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Nitrosopumilus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	5.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003498|JGI26239J51126_1012093	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2280
3300007508|Ga0105011_1035514	Not Available	2508
3300007509|Ga0105012_1048684	Not Available	2083
3300007509|Ga0105012_1186101	Not Available	681
3300014973|Ga0134293_1010395	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1391
(restricted) 3300024252|Ga0233435_1034822	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2138
3300025623|Ga0209041_1018151	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2646
3300027844|Ga0209501_10058830	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2759
3300028175|Ga0257117_1008031	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	4208
3300028706|Ga0257115_1142902	All Organisms → cellular organisms → Archaea	578

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	96.12%
Freshwater	Environmental → Aquatic → Freshwater	2.91%
Sediment	Environmental → Aquatic → Sediment	0.97%

Type

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	31.07%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.53%
Inlet	Environmental → Aquatic → Marine → Inlet	15.53%
Coastal	Environmental → Aquatic → Marine → Coastal	9.71%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.83%
Sediment	Environmental → Aquatic → Marine → Sediment	5.83%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	4.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.94%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.94%
Gulf	Environmental → Aquatic → Marine → Gulf	1.94%
Lake	Environmental → Aquatic → Freshwater → Lake	0.97%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	28.16%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	15.53%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	13.59%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	5.83%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	2.91%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.91%
Microbial Mats	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.94%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.94%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Marine → Gulf → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.97%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.97%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	15.53%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	12.62%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	11.65%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	10.68%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	5.83%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	5.83%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	4.85%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.91%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	1.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.94%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment	1.94%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.94%
Methane Seep Mesocosm	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm	1.94%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.94%
Hydrothermal Chimney Microbial Mat	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Chimney Microbial Mat	1.94%
Seawater	Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater	1.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.97%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.97%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.97%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.97%
Diffuse Hydrothermal Fluid	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluid	0.97%
Marine	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine	0.97%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents	0.97%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.97%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.97%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2049941003	Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 420	Environmental
3300000146	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 120m	Environmental
3300002533	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_80	Environmental
3300002913	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV	Environmental
3300002919	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV	Environmental
3300003495	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA	Environmental
3300003498	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA	Environmental
3300003501	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA	Environmental
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental
3300005237	Groundwater microbial communities from aquifer - Crystal Geyser CG15_big_fil_post_rev_8/21/14_0.20	Environmental
3300005825	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBB	Environmental
3300006019	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A	Environmental
3300006079	Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid D	Environmental
3300006465	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX	Environmental
3300006468	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Combined Assembly of Gp0119454, Gp0119453, Gp0119452, Gp0119451	Environmental
3300007508	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a	Environmental
3300007509	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b	Environmental
3300007981	Estuarine microbial communities from the Columbia River estuary - metaG 1556A-3	Environmental
3300008254	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN4B Hudson Canyon	Environmental
3300008738	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um, replicate b	Environmental
3300008961	Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02	Environmental
3300009332	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 2.7-0.2um, replicate b	Environmental
3300009339	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 2.7-0.2um, replicate a	Environmental
3300009408	Marine microbial mats from Loihi Seamount, Hawaii, USA. Combined Assembly of Gp0139187, Gp0139188, Gp0139189, Gp0139190, Gp0139191, Gp0139192	Environmental
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental
3300009441	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome	Environmental
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental
3300009498	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426	Environmental
3300009706	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86	Environmental
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental
3300010967	Microbial communities from the inside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.in	Environmental
3300010969	Microbial communities from the outside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.out	Environmental
3300014973	Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0116 : 2 days incubation	Environmental
3300020464	Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556075-ERR599101)	Environmental
3300021065	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015	Environmental
3300021068	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015	Environmental
3300021084	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015	Environmental
3300021087	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015	Environmental
3300022201	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_21	Environmental
3300022202	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21	Environmental
3300022220	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21	Environmental
3300022221	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1	Environmental
3300022413	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_21	Environmental
3300022902 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MG	Environmental
3300022912 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_150_MG	Environmental
3300022916 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_200_MG	Environmental
3300024252 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_135_MG	Environmental
3300024257 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_150_MG	Environmental
3300024260 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_135_MG	Environmental
3300024261 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG	Environmental
3300024327 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_120_MG	Environmental
3300024521 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1	Environmental
3300025142	Groundwater microbial communities from aquifer - Crystal Geyser CG11_big_fil_rev_8/21/14_0.20 (SPAdes)	Environmental
3300025431	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_100m_DNA (SPAdes)	Environmental
3300025468	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_120m (SPAdes)	Environmental
3300025545	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_120m_DNA (SPAdes)	Environmental
3300025592	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA (SPAdes)	Environmental
3300025623	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)	Environmental
3300025656	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200m (SPAdes)	Environmental
3300025662	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNA (SPAdes)	Environmental
3300025673	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon (SPAdes)	Environmental
3300025709	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA (SPAdes)	Environmental
3300025712	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 (SPAdes)	Environmental
3300025727	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA (SPAdes)	Environmental
3300025729	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_150m_DNA (SPAdes)	Environmental
3300026007	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D2 (SPAdes)	Environmental
3300027228	Estuarine microbial communities from the Columbia River estuary - metaG 1550A-3 (SPAdes)	Environmental
3300027413	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes)	Environmental
3300027582	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10 (SPAdes)	Environmental
3300027810	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)	Environmental
3300027813	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)	Environmental
3300027827	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)	Environmental
3300027844	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)	Environmental
3300027967	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2 (SPAdes)	Environmental
3300028174	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_135	Environmental
3300028175	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_135m	Environmental
3300028198	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100	Environmental
3300028706	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_100m	Environmental
3300031510	Marine microbial communities from water near the shore, Antarctic Ocean - #129	Environmental
3300031588	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_SCM	Environmental
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental
3300031775	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315	Environmental
3300031803	Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983	Environmental
3300031886	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416	Environmental
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental
3300032130	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915	Environmental
3300032277	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite	Environmental
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GB_4MN_00534160	2049941003	Hydrothermal Vents	MIQAGTGDVCLVFLSRRIFLGEDLRAAIDFQARRALFK
SI54feb11_120mDRAFT_100002624	3300000146	Marine	MIQAGTAEVCFVFLSRRIFRGEDLRAAIISQARRALFK*
JGI24925J35515_10027223	3300002533	Marine	LVLTXLLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQARKALFK*
JGI26060J43896_100532061	3300002913	Marine	LFVFRIIQAGTAEVCFVFFNRRIFLGDDLRAAIVSQARRALFK*
JGI26061J44794_10582061	3300002919	Marine	VLTARFVLRIIQAGTGTACLVFFNRRIFLGEDLRAAIEFQARRALFK*
JGI26244J51143_10375383	3300003495	Marine	PLLVLRIIQAGTADVCFVFFNKRIFRGEDLRAAIDFQARRALFK*
JGI26239J51126_10120931	3300003498	Marine	GLVLTALFVLRIIQAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK*
JGI26243J51142_10065906	3300003501	Marine	LVLTALLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQARKALFK*
JGI26243J51142_10635402	3300003501	Marine	VLTLLLVFRIIQAGTAEACFVFFSRRIFLGEDLRAAIDVQARKALFK*
Ga0055439_102384621	3300004019	Natural And Restored Wetlands	FDLTVLFVFKIIQAGTGDVCLVFFSRRIFRGDDLRAAINVQAR*
Ga0068996_101570531	3300005218	Natural And Restored Wetlands	TVLFVFKIIQAGTGDVCLVFFSRRIFRGDDLRAAINVQAR*
Ga0066644_101065571	3300005237	Groundwater	TAEVCLVFFNRRIFLGEDLRAAIDFQARRALFKSCVRIGRTQ*
Ga0074476_10897632	3300005825	Sediment (Intertidal)	RIIQAGTAEVCLVFFNRRIFLGEDLRAAIDFQARKALFK*
Ga0066375_100899993	3300006019	Marine	RFVLRIIQAGTGTACFVFFSRRIFLGEDLRAAIEFQARRALFK*
Ga0081601_12535492	3300006079	Diffuse Hydrothermal Fluid	AGTAEVCFVFLSRRIFLGEDLRAAIVCQARRALFK*
Ga0082250_100029002	3300006465	Sediment	LRMIQAGTGDVCLVFLRRRIFRGEDLRAAIDCQARRALFK*
Ga0082251_100416054	3300006468	Sediment	LGLVRTVLLVLIITQAGTGLVCLVFFNRRIFLGDDLRAAID*
Ga0105011_10355144	3300007508	Marine	LGLVLTDLFVLRIIHAGTGDVSFVFFNKRIFLPERLRAAIKSQA*
Ga0105012_10486844	3300007509	Marine	LGLVLTDLFVLRIIHAGTGDVSFVFFNKRIFLPERLRAAMKSQA*
Ga0105012_11861011	3300007509	Marine	RLGLVLTDLFVLRIIHAGTGDVSFVFFNKRIFLPERLRAAMKSQA*
Ga0102904_10278773	3300007981	Estuarine	LVLRIIQAGTADACFVFFNKRIFLGEDLRAAIVCQARKALFK*
Ga0105351_11866922	3300008254	Methane Seep Mesocosm	QAGTAEACFVFLSRRIFLGEDLRAAIVCQARRALFK*
Ga0115660_11857561	3300008738	Marine	TDLFVLRIIHAGTGDVSFVFFNKRIFLPERLRAAMKSQA*
Ga0102887_11041011	3300008961	Estuarine	TLLLVFRIIQAGTAEACFVFFSRRIFLGEDLRAAIDVQARKALFK*
Ga0117915_10722781	3300009332	Marine	TPLFVLRIIQAGTAEVCFVFFNKRIFRGEDLRAAISFQARRALFK*
Ga0117928_10946413	3300009339	Marine	RIIQAGTADACFVFFNRRIFLGEDLRAAIVVQARRALFK*
Ga0117756_10993061	3300009408	Marine	VLTLLLVLRIIQAGTADVCFVFFNRRIFRGEDLRAAIEFQARRALFK*
Ga0114997_103725942	3300009425	Marine	GTADVCFVFFNKRIFLGEDFRAAIDCQARRALFK*
Ga0115007_101564761	3300009441	Marine	VLRMIQAGTADVCFVFFNRRIFLGEDFRAAIDCQARRALFK*
Ga0114932_108048041	3300009481	Deep Subsurface	AGTAVACFVFFNRRIFRGEDLRAAIEFQARRALFK*
Ga0115568_104502261	3300009498	Pelagic Marine	TVLLVLRMIQAGTADVCFVFFNKRIFLGEDFRAAIDCQARRALFK*
Ga0115002_106277382	3300009706	Marine	LRIIQAGTADVCFVFFNRRIFLGEDLREAIDCQARRALFK*
Ga0114999_113101832	3300009786	Marine	LVLRIIQAGTADVCFVFFNRRIFLGEDLRAAIVCQARKALFK*
Ga0118733_1044296762	3300010430	Marine Sediment	LFVLRIIHAGTAEVCLVFFNRRIFLGEDLRAAIDFQARRALFK*
Ga0139247_10211261	3300010967	Hydrothermal Chimney Microbial Mat	VLRIIHAGTAEVCLVFFRRRIFLGEDLRAAIDFQARGALFK*
Ga0139246_11237841	3300010969	Hydrothermal Chimney Microbial Mat	TPRLVLRIIHAGTAEVCLVFFRRRIFLGEDLRAAIDFQARGALFK*
Ga0134293_10103951	3300014973	Marine	LVLTALLVLRIIQAGTADACFVFFNKRIFLGEDLRAAIVCQARKALFK*
Ga0211694_103123761	3300020464	Marine	IQAGTAVACFVFFSRRIFLGEDLRAAIVFQARRALFK
Ga0206686_10000237	3300021065	Seawater	MIQAGTAEVCFVFLSRRIFRGEDLRAAIISQARRALFK
Ga0206684_12388492	3300021068	Seawater	LVLRIIQAGTADVCFIFFNKRIFLGDDLRAAIVCQARKALFK
Ga0206678_102577891	3300021084	Seawater	LLVLRIIQAGTADVCFVFFNKRIFLGEDLRAAIDCQARKALFK
Ga0206683_103338102	3300021087	Seawater	AGTADACFVFFNKRIFLGEDLRAAIVCQARKALFK
Ga0224503_103268971	3300022201	Sediment	FVLRIIHAGTAEVCLVFLSKRIFLGEDLRAAIDFQARGALFK
Ga0224498_100125691	3300022202	Sediment	HAGTAEVCLVFFNRRIFLGEDLRAAIDFQARRALFK
Ga0224513_100049091	3300022220	Sediment	LVLRIIQAGTGEACFVFFSRRIFLGEDLRAAIDFQARRALFK
Ga0224506_100793301	3300022221	Sediment	LFVLRIIQAGTGDACLVFFRRRIFLGDDLRAAIVFQARRALFK
Ga0224508_101458471	3300022413	Sediment	IIQAGTGEACFVFFSRRIFLGEDLRAAIDFQARRALFK
Ga0224508_108528832	3300022413	Sediment	TAEVCLVFFNRRIFLGEDLRAAIDFQARRALFKPCVQICGA
(restricted) Ga0233429_10160655	3300022902	Seawater	QAGTADACFVFFNNRIFLGEDLRAAIVCQARKALFK
(restricted) Ga0233430_11740453	3300022912	Seawater	IIQAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
(restricted) Ga0233431_11371083	3300022916	Seawater	AGTAEACFVFFNRRIFLGEDLRAAIDVQARRALFK
(restricted) Ga0233431_12949631	3300022916	Seawater	LVLTALLVLRIIQAGTADACFVFFNKRIFLGEDLRAAIVCQ
(restricted) Ga0233435_10348224	3300024252	Seawater	LVLTALLVLRIIQAGTADACFVFFNKRIFLGEDLRAAIVCQARKALFK
(restricted) Ga0233435_10879091	3300024252	Seawater	QAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
(restricted) Ga0233442_10201374	3300024257	Seawater	ALFVLRIIQAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
(restricted) Ga0233442_10526001	3300024257	Seawater	RIIHAGTAEACFVFFNRRIFLGEDLRAAIDVQARRALFK
(restricted) Ga0233441_11440161	3300024260	Seawater	VFKIIHAGTAEACFVFFNRRIFLGEDLRAAIDVQARRALFK
(restricted) Ga0233439_100963543	3300024261	Seawater	IHAGTAEACFVFFNKRIFLGEDLRAAIDVQARRALFK
(restricted) Ga0233434_10539024	3300024327	Seawater	VLTLLLVFRIIQAGTAEACFVFFSRRIFLGEDLRAAIDVQARKALFK
(restricted) Ga0255056_102327893	3300024521	Seawater	LVLRITQAGTAEVCLVFFNRRIFLGEDLRAAIDFEPRRALFK
(restricted) Ga0255056_105533261	3300024521	Seawater	IQAGTGDVCLVFLRRRIFRGEDLRAAIDCQARRALFK
Ga0210019_10586541	3300025142	Groundwater	IHAGTAEVCLVFFNRRIFLGEDLRAAIDFQARRALFKSCVRIGRTQ
Ga0209449_10845091	3300025431	Marine	LVLTALLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQ
Ga0209685_10228733	3300025468	Marine	AGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
Ga0209142_10459363	3300025545	Marine	MIQAGTADVCFVFFNKRIFLGDDFRAAIDCQARRALFK
Ga0209658_10172484	3300025592	Marine	QAGTADVCFVFFNKRIFRGEDLRAAIDFQARRALFK
Ga0209041_10181514	3300025623	Marine	LVLTALFVLRIIHAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
Ga0209054_10125381	3300025656	Marine	KIIHAGTAEACFVFFNRRIFLGEDLRAAIDVQARRALFK
Ga0209664_11170111	3300025662	Marine	FVFRIIHAGTAEACFVFFNRRIFLGEDLRAAIDVQARRALFK
Ga0209494_11607332	3300025673	Methane Seep Mesocosm	LLVLSIIQAGTAVACFVFFSRRIFLGEDLRAAIVFQARRALFK
Ga0209044_10036641	3300025709	Marine	IIHAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
Ga0209305_10072866	3300025712	Pelagic Marine	SIIQAGTAVACFVFFSRRIFLGEDLRAAIVFQARRALFK
Ga0209047_10258641	3300025727	Marine	RIIHAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
Ga0209558_10250481	3300025729	Marine	VLTALFVLRIIHAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
Ga0210124_11238831	3300026007	Natural And Restored Wetlands	TQAGTGEVCFVFFNRRIFLGDDLRAAIDFEPRRALFK
Ga0208308_10458242	3300027228	Estuarine	RIIQAGTADACFVFFNNRIFLGEDLRAAIVCQARKALFK
Ga0208950_11208162	3300027413	Marine	LVLTALLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQARKALFK
Ga0208971_11363651	3300027582	Marine	LVLTLLLVFRIIQAGTAEACFVFFSRRIFLGEDLRAAIDVQARKALFK
Ga0209302_102197903	3300027810	Marine	LVLRIIQAGTAVACFVFFNKRIFLGEDLRAAIVCQARKALFK
Ga0209090_105559421	3300027813	Marine	LLVLRIIQAGTADVCFVFFNKRIFLGEDLRAAIVCQARKALFK
Ga0209035_101044613	3300027827	Marine	AGTAEVCFVFFNRRIFRGDDLRAAIVSQARRALFK
Ga0209501_100588301	3300027844	Marine	LVLTALLVLRIIQAGTADVCFVFFNKRIFRGEDLRAAIDCQARKALFK
Ga0209272_102754651	3300027967	Marine Sediment	HAGTAEVCLVFLSRRIFLGEDLRAAIDFQARRALFK
Ga0257123_10874973	3300028174	Marine	MIQAGTADVCFVFFNKRIFLGDDFRAAIDCQARRAL
Ga0257123_11084731	3300028174	Marine	FVLRIIQAGTAEVCFVFFNKRIFRGEDLRAAISFQARRALFK
Ga0257117_10080315	3300028175	Marine	GLVLTALFVLRIIQAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
Ga0257121_12605551	3300028198	Marine	IHAGTAEACFVFFNRRIFLGEDLRAAIDVQARRALFK
Ga0257115_11429021	3300028706	Marine	LVLTDLLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQARKALFK
Ga0308010_10635693	3300031510	Marine	MIQAGTADVCFVFFNKRIFLGEDFRAAIDCQARRALFK
Ga0302137_12316161	3300031588	Marine	LVLTDLLVLRIIQAGTAVVCFVFFNKRIFLGEDLRAAIVCQARKA
Ga0315332_105148462	3300031773	Seawater	AGTADACFVFFNKRIFLGEDLRAAIDVQARRALFK
Ga0315326_109137602	3300031775	Seawater	AGTADVCFVFFNKRIFRGEDLRAAIDCQARKALFK
Ga0310120_102950433	3300031803	Marine	TVLLVLRIIQAGTADVCFVFFNKRIFLGVDLRAAIVCQARKALFK
Ga0310120_103292471	3300031803	Marine	LLVLRIIQAGTADACFVFFNKRIFLGEDLRAAIVCQARKALFK
Ga0315318_101001544	3300031886	Seawater	LTLLFVFRIIQAGTADACFVFFNKRIFLGEDLRAAIDVQARRALFK
Ga0315278_120875562	3300031997	Sediment	DLTVLFVFRIIQAGTGDACLVFFNRRIFLGDDLRAAINIQAR
Ga0315315_111164872	3300032073	Seawater	LLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQARKALFK
Ga0315315_115076111	3300032073	Seawater	LVLTALLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQARKALF
Ga0315333_100681411	3300032130	Seawater	IIHAGTAEACFVFFNRRIFLGEDLRAAIDVQARRALFK
Ga0316202_100170671	3300032277	Microbial Mat	IHAGTADVCLVFLSRRIFLGEDLRAAIDFQARRALFK
Ga0315334_107102333	3300032360	Seawater	TALLVLRIIQAGTADACFVFFNKRIFLGEDLRAAIVCQARKALFK
Ga0315334_111387721	3300032360	Seawater	RIIHAGTAEACFVFFNKRIFLGDDLRAAIDVQARRALFK
Ga0315334_112428681	3300032360	Seawater	LVLTDLLVLRIIQAGTADACFVFFNKRIFLGEDLRAAIVCQARKALF