3300009332: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 2.7-0.2um, replicate b

Overview

Basic Information

• IMG/M Taxon OID: 3300009332
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0137043 | Ga0117915
• Sample Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 2.7-0.2um, replicate b
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 337463778
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → environmental samples → uncultured marine virus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): 314

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003827	Metagenome / Metatranscriptome	466	Y
F008781	Metagenome / Metatranscriptome	328	Y
F009609	Metagenome	315	Y
F023637	Metagenome / Metatranscriptome	209	Y
F025767	Metagenome / Metatranscriptome	200	Y
F029900	Metagenome / Metatranscriptome	187	Y
F031709	Metagenome / Metatranscriptome	182	Y
F035724	Metagenome	171	Y
F039110	Metagenome / Metatranscriptome	164	Y
F045131	Metagenome / Metatranscriptome	153	Y
F059474	Metagenome / Metatranscriptome	134	Y
F061392	Metagenome / Metatranscriptome	132	N
F064790	Metagenome	128	Y
F071095	Metagenome	122	Y
F072236	Metagenome	121	Y
F072364	Metagenome / Metatranscriptome	121	N
F087024	Metagenome	110	N
F099328	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117915_1001242	Not Available	24600
Ga0117915_1011706	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	4535
Ga0117915_1015936	Not Available	3526
Ga0117915_1034085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1950
Ga0117915_1040422	Not Available	1718
Ga0117915_1046803	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1539
Ga0117915_1048093	All Organisms → Viruses → Predicted Viral	1510
Ga0117915_1059576	Not Available	1292
Ga0117915_1069551	Not Available	1161
Ga0117915_1077122	Not Available	1080
Ga0117915_1084323	All Organisms → Viruses → Predicted Viral	1014
Ga0117915_1093318	Not Available	942
Ga0117915_1099303	Not Available	897
Ga0117915_1110323	Not Available	823
Ga0117915_1121837	All Organisms → Viruses → environmental samples → uncultured marine virus	750
Ga0117915_1130407	Not Available	692
Ga0117915_1135111	Not Available	658

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117915_1001242	Ga0117915_100124224	F064790	MYGSGCNDRLTQRVSTLFAKKYNAEDINMAKDGGSNDRSVRKILDWAIQNKDKLDETIFLLGLSGPERYELWDEVRGCYAGGCYDEDRPNDEPGSADSVHLLSGRTETLMAKYHYNTLRDYDRTFRNVIYLMGVLDSLNCKYLIFDCISWTRPNLPSREDYVGEDISWKYDDYIEILQYVIDNPLYQEILTHKNFYSKQCWAEFCSPRGKGLFAAEDERMEQDPDKFPDWGHPNEKSNQLWFEILTNYAEDNTLW*
Ga0117915_1011706	Ga0117915_10117064	F072364	MPDLIEDLGFADGISGNSIKMFLDGVPVLALQNFNWKIKKGKKPLFGAGFKTAHGVTRSAHKIYEIDFEIKEILINSAINVAQTAKNAVFLSTFEDFTDIRNAVIIIMYPGAAAVRSKTFTGVEITDQEGGFSDSEDAEPIGIKCSGFATKATGIF*
Ga0117915_1015936	Ga0117915_10159361	F003827	MAEGHWADWQVRQIAENMAEKRPKRDWFGADQERYLTSLKSWSHITARMLYSMGLEERQLIIFNHHLGIEHVGVQTFDPQDKGIPTDYRPNESHKLEK*
Ga0117915_1034085	Ga0117915_10340852	F071095	DNSRKEIECELLDETDKSIKVNYGIHTTFLPKKIITFDRVNTDSIIKVRLPLWLYRKKFN
Ga0117915_1040422	Ga0117915_10404222	F071095	MSWINSLLNKNKSKVIEVELLGETEKSIKVKYGIHIKHLPKKMISFDRTDEGNKVQVRLPLWLYRKSFI*
Ga0117915_1046803	Ga0117915_10468032	F061392	MICAVFTVGLFLSLQTFASELDKPDPAFKMAATLSPIDGGKLYIGGIDKDKKTFRLHLRHIGKDSKWVYYYASASAFVNEDGVVEVDSAVASIEYPHYTASVIGNTFRKATVKILFSQRGDGKGFFKEAGQVIFQECATKTFEAKNWNCTGWEYLGTLPGFQ*
Ga0117915_1048093	Ga0117915_10480934	F045131	GVFLTSGLYDSGYHGMMAGCMHVGCGSMKIKKGTRIGQYLSFAAEALHSYDGDYGLTKDHDKKYV*
Ga0117915_1059576	Ga0117915_10595762	F025767	MPQYRMVNPETGEAEDLTCSISDMEVLKQEGWVHVFVPNPNSIISGRDHSGHSGGHGTDEGWKDTLRRIRDNNPGSTIDV*
Ga0117915_1069551	Ga0117915_10695511	F023637	HQKDTSINEKRFVEEVQGGMINTDEDGLTDLNYSVSNREKLFETEHEIIDFRCEQDIPSHVEF*
Ga0117915_1072278	Ga0117915_10722781	F099328	TPLFVLRIIQAGTAEVCFVFFNKRIFRGEDLRAAISFQARRALFK*
Ga0117915_1077122	Ga0117915_10771223	F059474	LWSRAWCIDEEYSCLMAFKAIDRSEAIKVVSVDDPAINKELSDVDAYKDSHDMKDLAFVDGEEPTVFEIGTISFMKFAEIKDRHISFDLGSDGQEIKTNLFGLTADALRYSLKKAKNLPFKLKIERGRLSDTTMDKLARLGIVEELGNVALNLNGFGDDDEKKS*
Ga0117915_1084323	Ga0117915_10843232	F035724	MRFDYPTVAGATTSLAFTNDPESPYERAVIKHNSSVQMEDGSMYVYSRSVTNYRYSISVVLTSESERDALELFYDSTVNGAEKTFEYTDPYSDVYTVRFDENMRISEVFKGRLYRATFTLLQTA*
Ga0117915_1093318	Ga0117915_10933182	F039110	VSKVAKKAVAKKATKLTLKALADGSHGIDGGIYTFKKGDVVTVSKKAHYDSMKELACFSEG*
Ga0117915_1098912	Ga0117915_10989121	F031709	MADKDLGKELENIEDNIDNLKNKEFTIFGIKATPTTIM
Ga0117915_1099303	Ga0117915_10993032	F008781	MAINTTWSVNNMTHNDADGGVILVYWSCVAASDGDPSYSATEGGKLRL
Ga0117915_1110323	Ga0117915_11103232	F029900	MKKTIRLLLVLMVSLLSAQTATIKNSIIGYTTIGDIVSFDKPHLWTFIKSDDSKWMASICVDAPWADEVVYVEELFYKPFGDIRFGKDSDKFIIGLGRQAIPFGSNVPYLDLSRGDKFTYQTYTEHDVGLLYFGDGVSLYGGVGKWFLETYYGSDIENGYEGLTTVRLSYEVGDVHFVGVSFDNQERQSLDVSGYSKYVDYVTEFREDYQWGRAIVKTGKYGLSLLVGFESDK
Ga0117915_1121837	Ga0117915_11218371	F087024	ARSYEREYLGVWGKNVGDIFSPEGIELCCDTEYSWNDSDDTNDRVIGIDPGFGSSEFGICIMQKRKGKKSVIFADSYERASYLDMIDTVVKLSKKFQTKRIFVDSAWPEGIRDLRDKHRMNVQPIAFNQYGEKMLNYAAHHIDFQKVEIHPSFKKLKSQLMTIKYNKKGGTDKTKQNPFDLGDAFLLALYYYKMGSGVIAGIA*
Ga0117915_1130407	Ga0117915_11304072	F009609	MNIQGKKAKVTKTITSVNGALHEGETVLVERRENGHWRCRDNMGRIFYMEESNLKIIKK*
Ga0117915_1135111	Ga0117915_11351112	F072236	YMWREFNDEWYRIQTNCPVAIKKLQRRETAKEVGATTRGSTQYWRIFRVKYKKPATAKQSFKRLTGCKNNFTVRNGCFQAEIVHKSYDSNGQQVSK*